Cla005312 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005312
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Translation initiation factor SUI1 (AHRD V1 **** E9C6Z5_CAPO3); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1
Location	Chr10 : 5940582 .. 5940998 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAATAATTTTTTTCTTTATGTGGGTGTTGGAAACAGCTTCTTGGGTGCCTTCAGATACCACCAAGCAAATTACATGGTTGATCTAGATATCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACGACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAACGGGAATGTTGTTCAGGATAAAGAGCTGGGGAAGATAATCCAACTTCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTTGTTCAGGCTGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA

mRNA sequence

ATGTTAAATAATTTTTTTCTTTATGTGGGTGTTGGAAACAGCTTCTTGGGTGCCTTCAGATACCACCAAGCAAATTACATGGTTGATCTAGATATCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACGACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAACGGGAATGTTGTTCAGGATAAAGAGCTGGGGAAGATAATCCAACTTCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTTGTTCAGGCTGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA

Coding sequence (CDS)

ATGTTAAATAATTTTTTTCTTTATGTGGGTGTTGGAAACAGCTTCTTGGGTGCCTTCAGATACCACCAAGCAAATTACATGGTTGATCTAGATATCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACGACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAACGGGAATGTTGTTCAGGATAAAGAGCTGGGGAAGATAATCCAACTTCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTTGTTCAGGCTGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA

Protein sequence

MLNNFFLYVGVGNSFLGAFRYHQANYMVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF

Homology

[Close]

BLAST of Cla005312 vs. Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 9.3e-47
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 86
           M DL++Q+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 87  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cla005312 vs. Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-46
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 86
           M +LD Q+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 87  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cla005312 vs. Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.0e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPG-TKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 86
           MVD DIQIP++FDPFA+A+ +DA G TKEYVHIR+QQRNG+K LTTVQGLKKE SYDKIL
Sbjct: 1   MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKIL 60

Query: 87  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KDLKK  CCNG VV DKELGK+IQLQGDQRKNVS F+VQAG+VKKDQIK+H F
Sbjct: 61  KDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113

[Close]

BLAST of Cla005312 vs. Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.9e-46
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSD---APGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDK 86
           M DLDIQIP+AFDPFA+A   D   A G+K+YVH+R+QQRNG+K LTTVQGLKKEFSY+K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 87  ILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           ILKDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Cla005312 vs. Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.9e-46
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSD---APGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDK 86
           M DLDIQIP+AFDPFA+A   D   A G+K+YVH+R+QQRNG+K LTTVQGLKKEFSY+K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 87  ILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           ILKDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Cla005312 vs. TrEMBL
Match: A0A0A0L7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077610 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.0e-57
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MVDLD+QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK
Sbjct: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. TrEMBL
Match: A0A0A0K771_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209580 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.9e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MV+LD QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSY+KILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. TrEMBL
Match: K7LA44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G316700 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-53
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 23  QANYMVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYD 82
           QA YMVDL+IQ+PSAFDPFA+A++SDAPG KEYVHIR+QQRNGKK LTTVQGLKKEFSY+
Sbjct: 42  QAKYMVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYE 101

Query: 83  KILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KILKDLKKDFCCNG VVQDKELGKIIQLQGDQRKNVS FLVQAGLV+KDQ+KIHGF
Sbjct: 102 KILKDLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF 157

[Close]

BLAST of Cla005312 vs. TrEMBL
Match: A0A0B2NVN3_GLYSO (Protein translation factor SUI1 like 2 OS=Glycine soja GN=glysoja_006404 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-53
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 23  QANYMVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYD 82
           QA YMVDL+IQ+PSAFDPFA+A++SDAPG KEYVHIR+QQRNGKK LTTVQGLKKEFSY+
Sbjct: 42  QAKYMVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYE 101

Query: 83  KILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KILKDLKKDFCCNG VVQDKELGKIIQLQGDQRKNVS FLVQAGLV+KDQ+KIHGF
Sbjct: 102 KILKDLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF 157

[Close]

BLAST of Cla005312 vs. TrEMBL
Match: F2VQM9_CATRO (Putative eukaryotic translation initiation factor SUI1 OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.3e-52
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MVDLDIQIP+AFDPFA+AKDS APG KEYVHIRVQQRNGKKCLTT+QGLKKEFS +KILK
Sbjct: 1   MVDLDIQIPTAFDPFAEAKDSGAPGAKEYVHIRVQQRNGKKCLTTIQGLKKEFSLEKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           DLKKDFCCNGNVVQDKELGK+IQLQGDQRKNVSQFL+ AG+VKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKVIQLQGDQRKNVSQFLITAGIVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. NCBI nr
Match: gi|659126887|ref|XP_008463414.1| (PREDICTED: protein translation factor SUI1 homolog 2 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 5.8e-57
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MVDLD+QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK
Sbjct: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. NCBI nr
Match: gi|449444048|ref|XP_004139787.1| (PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MV+LD QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSY+KILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. NCBI nr
Match: gi|571473966|ref|XP_006586085.1| (PREDICTED: protein translation factor SUI1 homolog 2 [Glycine max])

HSP 1 Score: 215.7 bits (548), Expect = 5.1e-53
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 23  QANYMVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYD 82
           QA YMVDL+IQ+PSAFDPFA+A++SDAPG KEYVHIR+QQRNGKK LTTVQGLKKEFSY+
Sbjct: 42  QAKYMVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYE 101

Query: 83  KILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           KILKDLKKDFCCNG VVQDKELGKIIQLQGDQRKNVS FLVQAGLV+KDQ+KIHGF
Sbjct: 102 KILKDLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF 157

[Close]

BLAST of Cla005312 vs. NCBI nr
Match: gi|301602405|gb|ADK79108.1| (putative eukaryotic translation initiation factor SUI1 [Catharanthus roseus])

HSP 1 Score: 213.0 bits (541), Expect = 3.3e-52
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MVDLDIQIP+AFDPFA+AKDS APG KEYVHIRVQQRNGKKCLTT+QGLKKEFS +KILK
Sbjct: 1   MVDLDIQIPTAFDPFAEAKDSGAPGAKEYVHIRVQQRNGKKCLTTIQGLKKEFSLEKILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           DLKKDFCCNGNVVQDKELGK+IQLQGDQRKNVSQFL+ AG+VKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKVIQLQGDQRKNVSQFLITAGIVKKDQIKIHGF 112

[Close]

BLAST of Cla005312 vs. NCBI nr
Match: gi|1009111199|ref|XP_015899773.1| (PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 99/112 (88.39%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 27  MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 86
           MV+LD+QIP+ FDPFA+AKDSDAPG KEYVHIRVQQRNGKKCLTTVQGL+K+FSY++ILK
Sbjct: 1   MVELDVQIPTTFDPFAEAKDSDAPGAKEYVHIRVQQRNGKKCLTTVQGLRKDFSYERILK 60

Query: 87  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 139
           DLKK+FCCNGNVVQDK LGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 61  DLKKEFCCNGNVVQDKVLGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

The following BLAST results are available for this feature:

BLAST of Cla005312 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUI12_ARATH	9.3e-47	80.53	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 P...	[more]
SUI11_ARATH	4.6e-46	80.53	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 P...	[more]
SUI1_PIMBR	6.0e-46	79.65	Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1	[more]
SUI1_ORYSJ	7.9e-46	77.39	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 ...	[more]
SUI1_ORYSI	7.9e-46	77.39	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE...	[more]

BLAST of Cla005312 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M8_CUCSA	4.0e-57	99.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077610 PE=4 SV=1	[more]
A0A0A0K771_CUCSA	4.9e-55	95.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209580 PE=4 SV=1	[more]
K7LA44_SOYBN	3.5e-53	87.93	Uncharacterized protein OS=Glycine max GN=GLYMA_08G316700 PE=4 SV=1	[more]
A0A0B2NVN3_GLYSO	3.5e-53	87.93	Protein translation factor SUI1 like 2 OS=Glycine soja GN=glysoja_006404 PE=4 SV...	[more]
F2VQM9_CATRO	2.3e-52	90.18	Putative eukaryotic translation initiation factor SUI1 OS=Catharanthus roseus PE...	[more]

BLAST of Cla005312 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126887\|ref\|XP_008463414.1\|	5.8e-57	99.11	PREDICTED: protein translation factor SUI1 homolog 2 [Cucumis melo]	[more]
gi\|449444048\|ref\|XP_004139787.1\|	7.1e-55	95.54	PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus]	[more]
gi\|571473966\|ref\|XP_006586085.1\|	5.1e-53	87.93	PREDICTED: protein translation factor SUI1 homolog 2 [Glycine max]	[more]
gi\|301602405\|gb\|ADK79108.1\|	3.3e-52	90.18	putative eukaryotic translation initiation factor SUI1 [Catharanthus roseus]	[more]
gi\|1009111199\|ref\|XP_015899773.1\|	1.3e-51	88.39	PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001950	SUI1
IPR005874	SUI1_euk

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003743	translation initiation factor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU19074	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU39405	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU63645	watermelon EST collection version 2.0	transcribed_cluster
WMU69504	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005312	Cla005312.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU19074	WMU19074	transcribed_cluster
WMU39405	WMU39405	transcribed_cluster
WMU63645	WMU63645	transcribed_cluster
WMU69504	WMU69504	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001950	Translation initiation factor SUI1	GENE3D	G3DSA:3.30.780.10		coord: 22..138 score: 1.5
IPR001950	Translation initiation factor SUI1	PFAM	PF01253	SUI1	coord: 53..127 score: 5.0
IPR001950	Translation initiation factor SUI1	PROFILE	PS50296	SUI1	coord: 56..126 score: 23
IPR001950	Translation initiation factor SUI1	unknown	SSF55159	eIF1-like	coord: 25..138 score: 9.68
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAMs	TIGR01160	TIGR01160	coord: 31..138 score: 6.1
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 25..138 score: 5.0
None	No IPR available	PANTHER	PTHR10388:SF16	SUBFAMILY NOT NAMED	coord: 25..138 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005312	Cla97C10G189630	Watermelon (97103) v2	wmwmbB052
Cla005312	Csa3G077610	Cucumber (Chinese Long) v2	cuwmB194
Cla005312	MELO3C025375	Melon (DHL92) v3.5.1	mewmB448
Cla005312	ClCG02G001820	Watermelon (Charleston Gray)	wcgwmB178
Cla005312	ClCG10G005380	Watermelon (Charleston Gray)	wcgwmB052
Cla005312	CSPI03G05110	Wild cucumber (PI 183967)	cpiwmB193
Cla005312	Cucsa.059980	Cucumber (Gy14) v1	cgywmB048
Cla005312	Lsi05G005950	Bottle gourd (USVL1VR-Ls)	lsiwmB348
Cla005312	CsGy3G005170	Cucumber (Gy14) v2	cgybwmB183
Cla005312	MELO3C025375.2	Melon (DHL92) v3.6.1	medwmB434
Cla005312	CsaV3_3G005110	Cucumber (Chinese Long) v3	cucwmB204
Cla005312	Bhi11G000478	Wax gourd	wgowmB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005312	Cucurbita maxima (Rimu)	cmawmB298
Cla005312	Cucurbita maxima (Rimu)	cmawmB659
Cla005312	Cucurbita moschata (Rifu)	cmowmB006
Cla005312	Cucurbita moschata (Rifu)	cmowmB289
Cla005312	Cucurbita moschata (Rifu)	cmowmB653
Cla005312	Cucurbita pepo (Zucchini)	cpewmB002
Cla005312	Cucurbita pepo (Zucchini)	cpewmB386
Cla005312	Melon (DHL92) v3.6.1	medwmB544
Cla005312	Silver-seed gourd	carwmB0659
Cla005312	Watermelon (97103) v2	wmwmbB068
Cla005312	Wax gourd	wgowmB593