Cucsa.059160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.059160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cleavage stimulation factor subunit 3
Location	scaffold00614 : 1252914 .. 1267133 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTCGGATATGCTAAAATTTGCTTATGCTGAATTAGAAGAATCTCGTGGATCACTTCAGGCATGGAGTCTTGATTTCCCTAACATTTTGTATATCTAGGTTGTCCATTCATTTAACTCTGATTCTTTATTGTAGTCCGCAAAGAAAATATATGAAAGCCTTTTGAGCGATGGTGTTAATGCGACCGCACTAGCTCATATTCAAGTGAGTATGATATGTTAGCTCACATTATTTCTTCCACATACATGATTGGCTCCGTAAAGATAGTTGGCTCACACCTCATCAGGACTAGTAAACTGTTGAAGACTTAGAACCATGGTTGTATGGGAAATTGAATCATATTGACTTCCCTGTTTTTGTGAAAGTGGTAGTTTTCAAGGGAAATAATCTCATCTCAGATGTGCTTGTATGGATATACTACTAATATTATGGATCATATCAGATTTTAGGCTGGGGTGGGATATTGTGATTAAACAAGGGTGTAGAAAGATCCTGATGTCTTGTTCCTGTCAGAAATGGGGGAAGAAATTGAATTATTTCATTTTCATCTCCTAGAAACTTTTTGTTGTATGGTTTACTTTGTAAAATATATGTATTGTATTGAGAATTCTTTGGGAAGGATGTCATACTGGTAGCTTGTGGTGCAGTTTATCCGTTTCCTTAGAAGAAATGAAGGAGTTGAGGCTGCTCGCAAGCATTTTTTGGATGCTCGCAAATCCCCGAACTGCACATATCATGTTTATGTTGCTTATGCTATGATGGCCTTTTGTCTCGACAAGGATCCCAAGGTCTCTCTCTTTTCACTTTGGTAATGCTGTTCTAGATCTGGCCAGTTACTCTTGATCCTGAGAAGGAACTTAATGTTATCCTTATTCTTTTAACGTTGTCATTGGTTTTTCCTTGGTCCCCCTCCCCTCTTTTTTGGCTTCTCTATTTTTTTCACTGTATAACCCTATTGTACTTTAAGTTTTACATTAATAAAGAAGCTTGTCTCCGTTTAAAAAAAAAAACAATGTAGTTGCTTCTATGTGCTTGTGAGGTCAAGATATGGATTGTATGCTCTCTTAATGCTCTGCCCATCAATGCTTTGGATAAATCAAATTATCTTGCTCCTATGATCATGATTAATTAAAGGCATGTTGCATTTAGCTAACAAAGAATATGCATAGCTGTTGGTTTATTTACTTCATGTATTTACCATATGTAATTTATTAGATGTATTTAAATTGTGACCGTAAGTCTTTTTCCTTATATCTTAGATATATTAGTTCTTTCTTCTACTCAAGAGAGACCCTCGTAACTACTGTATAATGATAATTTATTATTTTCTGAATTTCACCTTGAAAATCAGCAGTATCGTCTTATCTACTTATTCTTAATGATGCTGCAGATTGCACATAATGTTTTTGAAGATGGAATGAAACGGTTTATGAATGAACCCACGTATATTCTTGAGTGAGTTTGTCCATCTCTGATATTCTGGTTCTTGAGATTTCAGCTGAGTCCGTACATTGCGGTGACAATTATTATAAAATTTCAATGAATTAACTATCTTTTATCTGCAACTCTTGAGAGTTCGAATGTATTTTTCAGATTACCTTCACCCCCACAATTAAGCTAAGATTGTCATTCTTTGGTGGTATAGTATCTGCTTGATTCTTTAGGAGTTCGAAGGTTAGGAACAAAATTAACTTTGATGGGGATAGCTAAAAACTTCCCAAAAATGTTCCAAGAGCTTCAAAACCTGTCTTAGATTTTTTTTTTTTACTTTTTTCATATAGAAAAAATTGTTTGTTGTTGCTCATGTACACCTGAAAAAAATCTCACCTTCTTCATTATTCCTCCCTTCCCCCTATGTCCTACCTACCTAAAGGGCTATTTCAATTTTAAAAAACACTACTTGATTGGGGAGATCTTGATGATGTGAGATTGTTTAACTTGGTGGGTCACGAATGGCTTCCATGCCAATTGCCAACAACCAGAACTTCTTAAACATCCTCTATTTTGTTTACTGCTCTGCGGGAATGTTTTTTGATCTCTAGCCTGTTTAAGGGAGTAACTTCTAATCATCTCCTCTTTTATGGATTATAGAAAGTTATTACCAAAACTGATACTCTGTAAATTTATAGATATGCAGATTTCCTTGCTCGCTTGAATGATGACAGAAATATTCGAGCTTTATTTGAGCGTGCTTTGAGTACCTTGCCTCTAGAGGAGTCTGCTGAGGTAGCCGAAATTGTGTATTAATTCTACTTATACTTCTGGTAGTTTTTCATGGTACAAAAGGATGAGCTTTTAGCCTCAACAACACAACGTGCGTAGTGCTCATTATTCTTTATAGCAATTTTATATACAGATGAACAGTGGATTTTAATTTCCTTGTTTCTCTTCTAGAGTAATTCTGATTGGATTGAATAAGAAAGAAGTTAATGTTTTTATAATACTTCAAAATAATAGGTATTTTTTTTACTTAACCTCCCCTGTCTCTTAGAACTCAAGGACACAGTTGTACAACCTATAAAACTGATCCTATTCAAGTTAGGTCATAATAGCAAACATACATTAGTACATTAACCTTTTGACATGTGCATCAAATTATGTGGTGCATGATACCTTTGGTTGGAATGACAATTGGATTTTTTCTATGCATGGTATGCCTCTTTGTGGGATAGGGTTGGAGTCAGTTATTTTGTCGGCACTTGTAGTCCATAATTGTACTTGTGAACTTTTATTTATTTTTTATTTTTCTTTGAAAACATTTTGAAAAAGCAAAAATATGATGCAGGATCATCATATCTGATGCATATATGATGCACCGTGTTGATATTTGACCAAATTCATGGCCAAACAAGGGAAATCCATCCAAGAGAACTCTCCTAGAACATTGTTCTATTCCAAAATAAATTCTGAAAGATTTCTTTACAATCCTAGAAGTGGATATTTATAGCCTTACAAGAAGATAAGACAAAATAACTAAATAAACCTAAAATACTAATGGGACTCTAATTAATCCAACATTAACAATTAAACTAATCTTAATGCAAGTGTACTAATTATTTAACAATTTTTCCATATTTGGAGAATGAAGCGAGAGAGAAGCTTTTACAATTCTCCTATATACTCTCCGGGATTTGTCAGTTGGAGTCTACCACACAGAGTTGAGAAGGAAGCTTGATTTATTTATTCGAACTTGAGGAGAAGTTATTTTTTTAAGTCAGGTTGAATGATGAAGAGAATTGTTAGATTATTTGTAAAGTTTACTCATTATTAGTTTACTTGTTAAATTTAGATTAATTATAGGTTGACAAGTGTTTTAGATTTAATTTAATTTTGTCTTATTTTCTTGTTAGGCTATAAATAGCCGCTTTAGGGTTGTGATAGGAAGTTTGTTTTTAATATATTTGCAAATATTACATTTTGCTCATAGAGTTTGCCATCAATTTTAGGGATGGATCTCACTTGTCTGGCCACATATTTGACCTAATACCAACCTGCTGCATCAATGTACTTAATAACACAACTTATGTTGTTTGTTGACTCCTAAATCCTAATTTTTCATGTACGCGTTAACATACCTCAACTGGTCTTGTGGATTTATACCACCGAAAGCAGTTCAGTTTCTACTTGATGCATATATTTTAATAGGCCTAAAGTTGTTTTTCTAGTACTAATTTCTGATCGTGCTTTCCCATGTCTCAGACCATGGTTACAGTCCCAAATACATTTTCTCTTTCATAAAGTACTCAAATGTTTGTAATTGTTTTCAAATTCTTCCAAAACATTCCTGGTTTATTCTTTGATTGGAGGATTTGTTTTATTCAAAGGGTCCAACTACCGACCATTTTTATTTAGTGATCTCAACGGATGCATATAAAAGATTTAGGTTCTCGTGAGATTCCTGGTTCATTCATCAAGGAAGAGTATAAAAAATTAAAAACATGTTGGAAGCTCGTGAGATTTTTTGGCTTCAAGTATGTGTCAATCTAGTTGATATATCTCGGTGTGCTTGCTAACCCCTCGTTCTTTTTTGCTATTAATGTATCTTTGTGGATAAAGCTCATTGTCTCTTCATTACGTCAATGACGAGTTCTGTTTTCGTTTAAAAAAAGCTCATGAGATTTTTGCTTCTATCTTTGTGGATATCCATTTTACGGTCTCGAGAGGATTTTGTAGCCCTTGTTCAATAGGGTGTTTTTTCAGATTCTTTGGTGTGAGCAGAATGGTTGTATTTTTAGACTCTTCTTCCACTTATAATTATTTTGTGGAAATGGTTATTTTGAATGCTCTTTATTGGTGCAAATATAAACACCTTATAGTCTTTCTTCTTTAATTTTCAAGTGGAGATCTTTCATGTAATTCATCTTTTGGTGTTTGAGAATCTATTCGTTACTTCGTTCATGAAAGAAATTGTTCTCTAATAAAAAAAACGTTCACTTTCTTGCCTCCATCTCGAGCTTGCTATTTCATGGCTAAATTTGGAACTGTCTAAAGCAATGCATTTTCTTCTCTTGTTTTCTCATTATTTTGTGTTCAATACTTTGTTATGCATTGCATCAATGATTTCTTTTTTAACATACATTTTTTTTGTGGGTTTGAGTTCTGAGGTATTCTAGATGTCTTTGTCTTCTCTAGGTTTGGAAACGCTTCATCCATTTTGAGCAAACTTATGGAGACCTGGCTAGCATGCTGAAGGTACTACTTTTATCTTTTTGTTATTTTTTTTTTCCCTATTAGTAAGAAACAGAAACGTATATCCTTCAAAATCAAAGAACAATTTAAGGCATGAAGTAGATACTACCAATCCAACGGAAGTAGCAACTTGAAAAAGTAGCTTCCACTGTTAATAGTAATCACCATTCAGAGGTTGTAATTACAAAAGAATTTAGTTTGTAGACCATCAAGAGGCATTGTTTTTCACCAAAAGTAAAAGGCCTAGAAAGAAGAAACTTATCTTCGAAACCCTACTATTCCTTTGCTTCCAAAGGTCCCAATGGAGGAAGAGTGCAGCATCTCTCCAATAGACTTGTTTCTTGCCGCCAAAGAACCTCTTATTGAGCTTTTCCATTAGCCAATCATCAATTTTATTAATTAGAACAGAATTCCAATTTCCACCCCCAAACACGTCAAAAATAGTGTGCCGCCCTTTAGCTGCAAAAGGACTGTGTAGAAACAAGTGCTTGTTGGACTTCTCCTCTTGAAGTCATAATTGGGATTTAGATGGAGAGATACTTCAGTTTTGAAATTTCCTTTGTAGCTTCTCGTGGGTAGACAAGTATCTATTGGTTAGCAACCATAAAAAGACTCATCATAAAGTAGTTCAATCTCTTGCCCGATTGGTTAATTCCATAAAGGAATATTAAGGAGTGAAGGATCCTGATGTATCGATCTTCCAGTTCTTAGTCATTACCCACCATCCATTGCTTCACTGTCACTTTATTCTAGAATCTATCTAATTATACATGTCAATGTATCCACATGCACTGTTCTTTTTTGGTTGCATGCAAGAAACATCGTTCGACTCAAGGTCGTTAGCAAGTTGTTACATACATTTGATTTTGGCAATTCAAGCCCTACACATACTCAGTTAGCTGGTTCATGTGCTGATATGTGTATCTATTTTTTTAATGGAATCTTTTGTTTCTGTTCCTCTAAGGTTCCTTTTTCATGTGGGTAAACATTATAGTAATTTATTGTAGACTTCTGGTTTCTGTCAAAAAGGGAAAACCCTCTCTTGGAGATTCTCAGATATCTTTTTGAAGGATGGGTACGTGAATGGTGAACACTCTTTCCCTTGATGAAACCCCCTTCTGTTCTTTTTTTCTTTTTGCTAGTTCTGTTAAAGAAAAATGAGTGAACAGATCATTGATTGATTAATTATCCATTCCGCAAAAACCACACTCAAAGAAGGGTAACGAGAGCAAAAGATCTTTTTCTTTATTACTACATTTCCTTGTTTCCTATATTTCGAAAAGGTCTTTTAAGTACAACATGGACGGGAGGGATTTGAACCCGAGACCTTTTGTCTTCAGAAACATACAGATGCTAGTTAAACGAAACTCATGTTGGCCATTCCCCGTTTCCTATATAAAAATAAATAATAGGTTTTTAATTAACAAGAAACTAAGAACAGGCACTGACATTAGGAGTATTAATGTTTCAAGGGAAGTATTTCTTTAAGGAGTACAATGCCCTCACCATTTACAGCCTTTGAAGGTGAAGCACGTACTCAATTTCATTTGTTATCACTTTTAGACAGTGCCAGGCTTCGAGAAGAGAAAATATGAGTAGTTCTTTTCACCATTGCCCACATGGACAGTGCGGAATGTTTTCCCACCTTTTCATATAGTTGTAGCCTTGTACAGGTGGAAAAAAGAAGAAAGGAAGCTCTTTCCCAAACGGGTGAAGATGGAGCATCAACATTGGAAAGTTCATTGCAAGATGTTGTGTCCCGGTATAGTTTTATGGATCTCTGGCCGTGCACATCAAGCGATCTGGATAATTTGACCAGACAAGAGGTAATCACAGTTTCATTCTTTGTAGTTTGTACATGATTTTCTGTGGATGCCTTAAATAATTTTTGTTTCGTGTTTGTGGTGTGTTTTGCAATTACACTTCTTATATACACTTCAAATGAAGTAAATAGTCAAGCCTTAGTATGCACTCTGATGAGGGAGCTTGGTTGCCTAGAGGAAAAGGCTTGAACTTTTTTATTGTATTTCTATTTTTTGTTAGAGATTCATTTTTTGATGCCATTACTCACATGACTTCAAATTTGTATGCCTAAACCATAAATATATGGAAATGGAGGGGAAAGCAGAAACTTATGCTGCAAAATATTTTTGGAATGTAAAACAAGGGGGGCGGTACATGTTTGAGTTTTTAACATAAATTAGACAGATGGAAGCGCTTTAATATCTCTAGAGGAGGAAGACAAACTTTATGCAATGCTGTCTTGGCCAGCCTCCCTACTTACTATCTGTCCTTCTTCCTTATTTCAGTTCATGTGGCAATTTTATTGGAAAAAATCATGTGGAACTTCTTTTGGGAAGGATTTGCAGGTGGCAAGATCAATCATCTAGTAAAATGGAGCTTGGTTTCCCTTCCTTTAAAAGATGGAGGTTTCGGTCTAGGGGGCATTAAAACCCAAAATTCAGCTTTGCTTGTTAAGTGGGGCTGGAGATATTCTAAGGAAGATTCAGGTTTATGGAGGAAAATTATTTGTAGTATCCATGACAAAGATACATTTGATTGGTTTACTTTGGGAAAATCTAGAAATAGCCTAAGGAGCCTTTTAGTTAACATTTCTAGAATGTGGAGGCTAGTGGAGCATTTAGCTCATCTTAAACTTGGCAGTGGCAGCAGAATTGGTTTTTGGACGGATATCTGGGCCTGTCTCTCTACTTTAAAGGAACTTTTTCCTTCGCTTTTCAGAATTGCTTTATTACCACTAGGCTCAGTTGCTGATCATTGGGATCATACTACCCTCTCTTGGTCCCTTTCTTTTAGAAGAAGCTTGAAAGAAGAGGAAATAGTAGCCTTTGGTTCCTTATTATCCTTGTGCCAGAAAAAGTGTTTGATTTTGATGACTCCAAGGTTTGGTCAATTGGACAGCAAGGTAGATTCTCTGTTAAATCTCTCTCAGCCCACCTGAATTCTGCCTCCCTAATGGATAAAAAACTCTTTAAAGCCCTATGGAAATCAAGCTGCCCTCGGTGAGTGAACATTCTGATGTGGATCATGCTTTTCGGGTCCCTAAATTGTGCAGAAATTCTTCAAAAAAATTCCCCAAGCAGGTGCCTCTAGCCTTCGGTTTGCCCTCTTTGTATGAATGCTAATGAGTCATTGGTTCACCTCTTCCTACTTTGCCTCTTTTCCTCTGTTTGTTGGAATAGTTTCTTCTCCATCTTTGATATTGCTTGGGTATTTGATGCCTCCCTCAGCTCCTCGGTGCTTCAGCTATTGGAGGGTCTGCCTCTTCCTTATAAGCCTCGACTTATTTGGTTCAATCTATTAAAAGCTCTTTTAGCAGAATTGTGGTTTGAACATAATCAACAGATCTTTCAAGACAAGAAAACATTAAGCCTAGAAATTTTCGATTAAGTGCAATGTAATGCAACAGTTTGGTGCTCTCTAAACAAGATTTTTTCAAATTACTTTACTCAAGACCTTGTCTCAATTGGGCAGTTTTTCTATCTGTCAGTTCCCTATCTGGACTTCCATGGAGCTTTTTTCTATGCTTTCTGGACAGTAGTATCTTAGTTGTACTAATAAGGCTCATCTGTTTTCTGGCCTTTTTCTTTTCTAGTTTTCGATGATTTTTATATTTGCTGATTGGCTGGATTCTGCTCTCATTGTAATAGGTTGGACTTTGTTCTCATTGTTGTAATAGGTTAGTTTTAGCTGGGATATGATGTTTTGGTGCTGAGGGGGTGTCGACCTAGTTGAGATGTCCGGTTAAAAGTTTTGGTTGATTGTTTTAAGAAATTTGTCTCCGTTTAAAGAAAAAAACATATTCCTCGTAAACTCTTTTGTTTGACTGGTGCTACTTCTACTCTTTCAGTGGCTTGCTAAGAACATAAGTAAGAACTCAGAAAAATCTAGTCTTCCTGGTGGAACTGGCTTCTTAGGTAATTTTATTATTCTTTTCTGGTTGAAATATATTGGTAAACTTTGTTTCTCTGGGTAAGCTCTGTCCTTTTTTATTCAGATACTGGTTCTGCTGGTTTTATGAGCCATTCAATTCCATCTACAAAGGTTGTTTATCCTGATACCTCTCAGATGGTGATTTATGACCCAAGCCAAATATTAGGTAATTATGAAACTCCAGACTTTTATCCTGGAATTTAAGTAAGATGGATCTGATCAAGTTCTAATGGTATTTATCTTTTAGGACAGTTTTAATTAATGGCATCATATTTTCAGAAGTTGGTGATTAATTAATGTAGTTATCAACCATTTAATTTTTATAAATACTACTGATTAATATCTAATATATTGTCTAGTAGTCCTCACAATATTTTTGCATTGAAGTTTTTGAAACCAGTTGCATTGGACCTAGTGAATATTTAAATATCAGTGTCATTTTATCATCACTAATGAATTCTATAGAACATCCTTTTCTGATTTTCTTTTAATGGTTTTTTATGCCAACTGCTGGGACTACCGGTTCCTGTTCATATACTTGTTTAGATGAAATGGACTTTTCCTTGTGAGGAAATTGTAAGACCCCTAGTTAGAATTTTTTTTTGAAACGAAGACAAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGAGTTATACAAAGAGAGCAAAAAATACTTGGAGTTGAACAAGTAGAAATCAGATTCAGATACTTAAGTTTGGTGATACCATTAGATAAAATTAGGAAAATTCAATGTGTCATACGCCTGACAAGAGGCTTGACCTAGTGAAAGAAAGGAATTTTTAAAGTTGGAATAGAGGAAACGTTTGGCTAATTAAAACATGCTAGATATGCAATGGAGTAATGTTTACTATAGCACTATAACGAACTGAGAAGAAAAAAGTTTTTCTTTTTCCCGATTTTTCCGCTCAAGGATCTTATGAGTAACTCCAAATATCCTGCTAAAAATAGATAACTTCGTTTTCAGAGTACAATACCAATTGATTATTTGATTTGATTTTACTAAAGTTGTCCGTGATTTGGTGGTGACAGGAATTCTTCCAACTGCAACAGCTTCAGGACTTCCGGCTAATCCGTCAAATCCAGTTTCTGTTGCAAGTGGAGCACCGACTAGTGTATTTGACGAAATATTAAAAGCAACACCGGCTGCATTAATAGCATTTCTTGCAAACTTACCTGCTGTTGATGGTAACCTTTCTTATTATATCTTATTTTGAAGGCAGTCATGGTTATGAGTGCAAATAAAGTCTCGTATTAGCTAGGGAAGGAGAGGCGTGAGAACAAAAGTTTCCTAAAAACTTACTATAAGAGAAATCTCAAAAAAGGAAATTGAGTGCCCTATTGATTAGCCAGCTCTGGTCCAAGACTCTAAACCTTCTTGAGATCAAGGTGTATGACTAATCCCATTCATGCGTTGATAGCAAAATGAGTGAGAATGACAGGTCTAATATTGTTGTTCCTGAAGATATGGAAGAAAAGGACACTGATGATGAGATGGAGGTCAGAGTAGAAACTGGTGGTAATGAGGTTGAATAGGACCGTAATCTGGATGAGTATGATCCTTTTTTGGATATTCTCATTGCGGTGAGAAAAGGTACCAGGTTCTACATGAATCACCCCATGTGTAACTATGTTTCCTATGATAATCTATCTCTACAGTTTAGAGCCTTCACATCTGGCCTTAACTCTACCATGATACCAAAAAATATTCACATTTATTTAGAGTGTCTTGAGTGGAAAACTGCTCTTATGGAAGAGACGTGGGTCCTTGAAAAGAATAAGACTTGAGAGATATGTGCTCTTCCTAACGGACATAAAACTTTAGGATGTAAATGGGTGTTCACACTTAAATACAAGATAGATGGAACCTTTGACAGACACTAGGCAAGGTTAGTTGCAAAAGGGTTTACTCAGACCTATGGTGTTGATTACTTGGAAAGTTTTTTTCAAGGTTAGTTGCAAAAGGGTTTACTCAGACCTATGGTGTTGATTACATGGAAAGTTTTCTTCGGTTGCTAAACTAAATACGGTTGGAGTCTTGTTATTTGTTGTTGTGAACAAAGACTAACCTCTATACTAGTTAGATGTTAAGAATGCGTTCTTAAATGGAGACCTGGAAGAGGAAGTCTATAGGAGCCCCCCAAGGTTTGAAGCTCAGTTTGTTCATCGGGTTTGTAAACTTCAGAAATCTTTATATGGACTGAAACAGTCACCGAGAGCATGGTTTGATAGGTTTACTACCTTTGTTAAGTCCCAAGGGTACAATAAGGGGCACTCTAACCATTGTTTACAAAAGTCTCCAAGGCTTGGAAGATCGCAATATTGATTGTTTATGTTGATGGCATCGTTTTATTTGGAGATGACACTATTGAAACCATCCAACTAAAAAAGAGGATGCACTGTGGAAATCATCCAACTGAGAAAGAGGATGGGTGATGAGTTTGAAATAAAAGACTTGGAAAATCTGAAATATTTCCTTGTGATGGAGGTAGCTAGATCTAAAGTAGGTACCTCCATATCTCAGAAGTATACCCTTGATTTGTTGATCGAGACAGGTATGCTGGGATGTTGCCCTGCTGATACTCCCATTGAGTTCAACGGTAAGCTAGGAAAGGTGATAAAGTTCTCATTGATAAAGAACAATACCAACGCTTTGTGGGTAAGTTGATTTACTTGTCTCATACCCAACCAAATATTTCCTATGCTTTGAGTGTCGTTAGCTAGTTCATTCAGGCTCTAATGAGGAACACATGAAGGCGGTTAACGAAATCTTGAGGTACTTAAAAACAACTCCTAGTAAAGGATTGTTGTTCAGAGAGATAGATAGGAAAGCTATTGAGGCTTATATTGACTCGACTGTGCAGGGTCTGTTGACAACAAATCCACCTCTGGTTACTGTACCTTTGTATGGGGCAATCTTGTAACTTGGAGGAGTAAGAAACAAGGGTTGTGGCCAGGAGCAGTGTTGAGGCTGAGTTTGGGGATATGCGAGGAAATTTGGCTCTAAAAAGTTTTATCGAATCGTCATCAAGATTGTGCGGTGTCGATGAAATTATTTTGTGATAACAAAGTAGCTATTAGCATCGCCATCAATCCAGTTCAACATGATAGAATGAAACATGTCGAGATTGATCGACACTTCATTAACAAAGACTAGACAATGGTACCATATGCATTCCATACATTCCCTCGAGCCAACAGGTTGCAAATGTTCTCACCAAGGGGATTTGCAGACAGAACTTTGACTTTTGTTTTAACAAGTAGATCTCATGATGTCTACATCTCATCTTGAGGGGAGTGTTAGAATTAGTGGGCTTAGCCCCTGGGAAGGATTTACCTTAATATTCTTTCCTTTTCTATCATAAGCGGTAACCTATTTATCTTTCCTCTTGTATCTTCTGTTAATATGAGAAACTAATAAGAAAGTCATTCGTGGTTTTTCTCCAGGTACCTAGATTTCCACGTAACTCGGTGTTTATTTTTACCACTTTTAACACATCTCATGAAATTTCAGGTCCAACTCCCGACGTTGATATTGTACTATCAGTTTGTCTTGAGAGTGATCTACCTACAGTTCCATTGGTCAAATCAGGGGCAACACCAGCACAAGTTTCGGGTGGTCCTGTACCTACCACTAGTGACCTTTCTGGTTCAAGCAAGTCTCATGCATTTTCCAATTCCTCCCTAAAGCATACCAGAGACAAGCAATCAGGAAAGAGAAAAGATTACGACAGTATGTCCTTTCATTCTTATTTACACTTTCCGAAACTTTGGTTATTACTTTCTAGTGGTAAAAAGTTTCAATTGCATCTTTCAACCCCTAGTTGTACTTATATTATATGTGGTCTCTGCTGTTTAACACCACGAACTAAATGATGGCGTGAGCCTATTGTGCAAATATTACCCAATATGGCACGATGTGGCTGAAAATTAAATAGGAACTTATGACAACTTAAAGCAGCAAACCAAATTCCTTTAATGACCCTGTTACTCTACTTTTAGTCCAGCTATCTTTTTTTACCATTTATCTAGATATCGTGGCAAATCAACTAATACTTGTTTAACAGATATGTCGATAATAATGACGACGTAGAATTACAATTCTAAGTTGAAGGACTACATTTTATAATTTTACCTGATTTGCAATTTTCAAAATGATGTTGTCAATCATGACATTTCTTAGGGGTTGAATTGTTGGACTGTTATGGCAAGTTAGCTAGCGGTTAACATTAAACTCTAAAACCATTGACCTTTTTTTTTCTGTTACGTTGCCTTTGGTTTGGAACTGTCAGATGTAATAAATTTTAATACTTCCGTAGGACTCACCATATACGCATGCTCTTTAGGTTTAATCATTAATGATCCTCTTGATTTATTTTTGGCATACTGCCAGCTATTATCTTTGTTTACTGGTTTAGTTTGGATGATGAATCTATTTTATAGGTTGTATAACCGTGTCTTTGAGTTTTAAGGATTTAGTTTTTATAGTTAGTTTAATCCTCTGTGTAAAGTACTATAAAATTACTATGTATAGTTATTATGAATTTGGTTCTGAGTTTCAAAGACTACATCATTAGTGTTCAAGTCTAAGAAAGAAGTAGTTATACAAGAATTTGAATCTCTTGTTTACTATTATCTCAATTTTCAAATCATTATTGTAAGTTCAAAAGTTAGTGATCCATTTCTCTAGCAAGTACCAATTACTTTTTGCTGATTGGCTATATGAGTCTGTATTCCATATTGCGATTAATTTCGTTATAAATTAATTTGATCAAACATAGTATGTTTCATTCTCCAACACTTTCTTCTATTCTTCTATTACTTTTGAAGTGTGAAGTTTACTTACTGTCATGTTGGGTTTAGATTTCTTGTTTCTATATCTTTACATAATCTTTGTTTTCTTAAAAGAAAAAAGAAACTATTTGATCTTATTATAACCAGACAGTAACATTTGTTAATTGGTCTATAGGACAAGAGGACAATGAAAGTACGACAGTCCAAAGTCAGCCGATGCCTAAAGATTTTTTCAGGATAAGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACAGGTTCTGCTTCCTATGGAAGTGCTATTTCTGGAGATCTCTCTGGTAGCACTGGCTGAATTCATTATGCTTTTCCTTTTCTAAATTCTTATCCACTTTATTCTTTCCCATTTAAGTTGACAATTGAGACACTCATTTCCCTTAAAAAGATTTTCTTTTACTAGC

mRNA sequence

GACTCGGATATGCTAAAATTTGCTTATGCTGAATTAGAAGAATCTCGTGGATCACTTCAGTCCGCAAAGAAAATATATGAAAGCCTTTTGAGCGATGGTGTTAATGCGACCGCACTAGCTCATATTCAATTTATCCGTTTCCTTAGAAGAAATGAAGGAGTTGAGGCTGCTCGCAAGCATTTTTTGGATGCTCGCAAATCCCCGAACTGCACATATCATGTTTATGTTGCTTATGCTATGATGGCCTTTTGTCTCGACAAGGATCCCAAGATTGCACATAATGTTTTTGAAGATGGAATGAAACGGTTTATGAATGAACCCACGTATATTCTTGAATATGCAGATTTCCTTGCTCGCTTGAATGATGACAGAAATATTCGAGCTTTATTTGAGCGTGCTTTGAGTACCTTGCCTCTAGAGGAGTCTGCTGAGGTTTGGAAACGCTTCATCCATTTTGAGCAAACTTATGGAGACCTGGCTAGCATGCTGAAGGTGGAAAAAAGAAGAAAGGAAGCTCTTTCCCAAACGGGTGAAGATGGAGCATCAACATTGGAAAGTTCATTGCAAGATGTTGTGTCCCGGTATAGTTTTATGGATCTCTGGCCGTGCACATCAAGCGATCTGGATAATTTGACCAGACAAGAGTGGCTTGCTAAGAACATAAGTAAGAACTCAGAAAAATCTAGTCTTCCTGGTGGAACTGGCTTCTTAGATACTGGTTCTGCTGGTTTTATGAGCCATTCAATTCCATCTACAAAGGTTGTTTATCCTGATACCTCTCAGATGGTGATTTATGACCCAAGCCAAATATTAGGAATTCTTCCAACTGCAACAGCTTCAGGACTTCCGGCTAATCCGTCAAATCCAGTTTCTGTTGCAAGTGGAGCACCGACTAGTGTATTTGACGAAATATTAAAAGCAACACCGGCTGCATTAATAGCATTTCTTGCAAACTTACCTGCTGTTGATGGTCCAACTCCCGACGTTGATATTGTACTATCAGTTTGTCTTGAGAGTGATCTACCTACAGTTCCATTGGTCAAATCAGGGGCAACACCAGCACAAGTTTCGGGTGGTCCTGTACCTACCACTAGTGACCTTTCTGGTTCAAGCAAGTCTCATGCATTTTCCAATTCCTCCCTAAAGCATACCAGAGACAAGCAATCAGGAAAGAGAAAAGATTACGACAGACAAGAGGACAATGAAAGTACGACAGTCCAAAGTCAGCCGATGCCTAAAGATTTTTTCAGGATAAGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACAGGTTCTGCTTCCTATGGAAGTGCTATTTCTGGAGATCTCTCTGGTAGCACTGGCTGAATTCATTATGCTTTTCCTTTTCTAAATTCTTATCCACTTTATTCTTTCCCATTTAAGTTGACAATTGAGACACTCATTTCCCTTAAAAAGATTTTCTTTTACTAGC

Coding sequence (CDS)

GACTCGGATATGCTAAAATTTGCTTATGCTGAATTAGAAGAATCTCGTGGATCACTTCAGTCCGCAAAGAAAATATATGAAAGCCTTTTGAGCGATGGTGTTAATGCGACCGCACTAGCTCATATTCAATTTATCCGTTTCCTTAGAAGAAATGAAGGAGTTGAGGCTGCTCGCAAGCATTTTTTGGATGCTCGCAAATCCCCGAACTGCACATATCATGTTTATGTTGCTTATGCTATGATGGCCTTTTGTCTCGACAAGGATCCCAAGATTGCACATAATGTTTTTGAAGATGGAATGAAACGGTTTATGAATGAACCCACGTATATTCTTGAATATGCAGATTTCCTTGCTCGCTTGAATGATGACAGAAATATTCGAGCTTTATTTGAGCGTGCTTTGAGTACCTTGCCTCTAGAGGAGTCTGCTGAGGTTTGGAAACGCTTCATCCATTTTGAGCAAACTTATGGAGACCTGGCTAGCATGCTGAAGGTGGAAAAAAGAAGAAAGGAAGCTCTTTCCCAAACGGGTGAAGATGGAGCATCAACATTGGAAAGTTCATTGCAAGATGTTGTGTCCCGGTATAGTTTTATGGATCTCTGGCCGTGCACATCAAGCGATCTGGATAATTTGACCAGACAAGAGTGGCTTGCTAAGAACATAAGTAAGAACTCAGAAAAATCTAGTCTTCCTGGTGGAACTGGCTTCTTAGATACTGGTTCTGCTGGTTTTATGAGCCATTCAATTCCATCTACAAAGGTTGTTTATCCTGATACCTCTCAGATGGTGATTTATGACCCAAGCCAAATATTAGGAATTCTTCCAACTGCAACAGCTTCAGGACTTCCGGCTAATCCGTCAAATCCAGTTTCTGTTGCAAGTGGAGCACCGACTAGTGTATTTGACGAAATATTAAAAGCAACACCGGCTGCATTAATAGCATTTCTTGCAAACTTACCTGCTGTTGATGGTCCAACTCCCGACGTTGATATTGTACTATCAGTTTGTCTTGAGAGTGATCTACCTACAGTTCCATTGGTCAAATCAGGGGCAACACCAGCACAAGTTTCGGGTGGTCCTGTACCTACCACTAGTGACCTTTCTGGTTCAAGCAAGTCTCATGCATTTTCCAATTCCTCCCTAAAGCATACCAGAGACAAGCAATCAGGAAAGAGAAAAGATTACGACAGACAAGAGGACAATGAAAGTACGACAGTCCAAAGTCAGCCGATGCCTAAAGATTTTTTCAGGATAAGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACAGGTTCTGCTTCCTATGGAAGTGCTATTTCTGGAGATCTCTCTGGTAGCACTGGCTGA

Protein sequence

DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARLNDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDGASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTGSAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG*

Homology

[Close]

BLAST of Cucsa.059160 vs. Swiss-Prot
Match: CTF77_ARATH (Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana GN=CSTF77 PE=1 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 3.8e-150
Identity = 280/456 (61.40%), Postives = 351/456 (76.97%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DS+MLK+A+AE+EESRG++QSAKK+YE++L  G +  +LAHIQ++RFLRR EGVEAARK+
Sbjct: 298 DSEMLKYAFAEMEESRGAIQSAKKLYENIL--GASTNSLAHIQYLRFLRRAEGVEAARKY 357

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSP+CTYHVY+A+A MAFC+DK+PK+AHN+FE+G+K +M+EP YIL+YADFL RL
Sbjct: 358 FLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTRL 417

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLP+E+SAEVWKRFI FEQTYGDLAS+LKVE+R KEALS  GE+G
Sbjct: 418 NDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEEG 477

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           +S  ESSLQDVVSRYS+MDLWPCTS+DLD+L RQE L KN++K + K++LP     + + 
Sbjct: 478 SSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAGKTNLPHVPAAIGSV 537

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDP---SQILGILPTATASGLPANPSNPVSVASGAP 300
           ++        S+KVVYPDTSQMV+ DP   S+         AS     PS   + A+   
Sbjct: 538 AS--------SSKVVYPDTSQMVVQDPTKKSEFASSANPVAASASNTFPSTVTATATHGS 597

Query: 301 TSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVS 360
            S FDEI K TP AL+AFLANLP VDGPTP+VD+VLS+CL+SD PT   VK         
Sbjct: 598 ASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFA---AK 657

Query: 361 GGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFR 420
           G P P+ +D SG ++       S +  RD+++ KRKD DRQE++++ TVQSQP+P D FR
Sbjct: 658 GNP-PSQNDPSGPTR-----GVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFR 717

Query: 421 IRQIQKARG-ATSSQ--TGSASYGSAISGDLSGSTG 451
           +RQ++KARG ATSSQ  TGS SYGSA SG+LSGSTG
Sbjct: 718 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGSTG 734

[Close]

BLAST of Cucsa.059160 vs. Swiss-Prot
Match: CSTF3_PONAB (Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.8e-44
Identity = 138/434 (31.80%), Postives = 206/434 (47.47%), Query Frame = 1


Query: 4   MLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKHFLD 63
           +L FAYA+ EESR   +    IY  LL+       L +IQ+++F RR EG+++ R  F  
Sbjct: 341 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 400

Query: 64  ARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARLNDD 123
           AR+     +HVYV  A+M +   KD  +A  +FE G+K++ + P Y+L Y D+L+ LN+D
Sbjct: 401 AREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 460

Query: 124 RNIRALFERALS--TLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDGA 183
            N R LFER L+  +LP E+S E+W RF+ FE   GDLAS+LKVEKRR  A  +  E   
Sbjct: 461 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKE 520

Query: 184 STLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTGS 243
           + L      +V RY FMDL+PC++S+L  L       K++S+    + +P     +    
Sbjct: 521 TAL------LVDRYKFMDLYPCSASELKALG-----YKDVSRAKLAAIIPDPV--VAPSI 580

Query: 244 AGFMSHSIP-STKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 303
              +   +    +   PDT QM+ + P  +          GL     +PV      P  V
Sbjct: 581 VPVLKDEVDRKPEYPKPDTQQMIPFQPRHL-------APPGL-----HPV------PGGV 640

Query: 304 FDEILKATPAALIAFLANLP---AVDGPTPDVDIVLSVCLESDLP-----TVPLVKSGAT 363
           F       P A +  +  LP      GP   VD ++ +     +P      V ++  GA 
Sbjct: 641 F-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAP 700

Query: 364 PAQVSG-GPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPM 423
              V G GPV + + L+                   ++ KR + D  ED E   V   P 
Sbjct: 701 ELAVEGNGPVESNAVLT-------------------KAVKRPNEDSDEDEEKGAV--VPP 717

Query: 424 PKDFFRIRQIQKAR 426
             D +R RQ ++ R
Sbjct: 761 VHDIYRARQQKRIR 717

[Close]

BLAST of Cucsa.059160 vs. Swiss-Prot
Match: CSTF3_HUMAN (Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.8e-44
Identity = 138/434 (31.80%), Postives = 206/434 (47.47%), Query Frame = 1


Query: 4   MLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKHFLD 63
           +L FAYA+ EESR   +    IY  LL+       L +IQ+++F RR EG+++ R  F  
Sbjct: 341 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 400

Query: 64  ARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARLNDD 123
           AR+     +HVYV  A+M +   KD  +A  +FE G+K++ + P Y+L Y D+L+ LN+D
Sbjct: 401 AREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 460

Query: 124 RNIRALFERALS--TLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDGA 183
            N R LFER L+  +LP E+S E+W RF+ FE   GDLAS+LKVEKRR  A  +  E   
Sbjct: 461 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKE 520

Query: 184 STLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTGS 243
           + L      +V RY FMDL+PC++S+L  L       K++S+    + +P     +    
Sbjct: 521 TAL------LVDRYKFMDLYPCSASELKALG-----YKDVSRAKLAAIIPDPV--VAPSI 580

Query: 244 AGFMSHSIP-STKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 303
              +   +    +   PDT QM+ + P  +          GL     +PV      P  V
Sbjct: 581 VPVLKDEVDRKPEYPKPDTQQMIPFQPRHL-------APPGL-----HPV------PGGV 640

Query: 304 FDEILKATPAALIAFLANLP---AVDGPTPDVDIVLSVCLESDLP-----TVPLVKSGAT 363
           F       P A +  +  LP      GP   VD ++ +     +P      V ++  GA 
Sbjct: 641 F-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAP 700

Query: 364 PAQVSG-GPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPM 423
              V G GPV + + L+                   ++ KR + D  ED E   V   P 
Sbjct: 701 ELAVEGNGPVESNAVLT-------------------KAVKRPNEDSDEDEEKGAV--VPP 717

Query: 424 PKDFFRIRQIQKAR 426
             D +R RQ ++ R
Sbjct: 761 VHDIYRARQQKRIR 717

[Close]

BLAST of Cucsa.059160 vs. Swiss-Prot
Match: CSTF3_MOUSE (Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.8e-44
Identity = 138/434 (31.80%), Postives = 207/434 (47.70%), Query Frame = 1


Query: 4   MLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKHFLD 63
           +L FAYA+ EESR   +    IY  LL+       L +IQ+++F RR EG+++ R  F  
Sbjct: 341 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 400

Query: 64  ARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARLNDD 123
           AR+     +HVYV  A+M +   KD  +A  +FE G+K++ + P Y+L Y D+L+ LN+D
Sbjct: 401 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 460

Query: 124 RNIRALFERALS--TLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDGA 183
            N R LFER L+  +LP E+S E+W RF+ FE   GDLAS+LKVEKRR  A  +  E   
Sbjct: 461 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 520

Query: 184 STLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTGS 243
           + L      +V RY FMDL+PC++S+L  L       K++S+    + +P     +    
Sbjct: 521 TAL------LVDRYKFMDLYPCSASELKALG-----YKDVSRAKLAAIIPDPV--VAPSI 580

Query: 244 AGFMSHSIP-STKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 303
              +   +    +   PDT QM+ + P  +          GL     +PV      P  V
Sbjct: 581 VPVLKDEVDRKPEYPKPDTQQMIPFQPRHL-------APPGL-----HPV------PGGV 640

Query: 304 FDEILKATPAALIAFLANLP---AVDGPTPDVDIVLSVCLESDLP-----TVPLVKSGAT 363
           F       P A +  +  LP      GP   VD ++ +     +P      V ++  GA 
Sbjct: 641 F-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAP 700

Query: 364 PAQVSG-GPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPM 423
              V G GPV +++ L+                   ++ KR + D  ED E   V   P 
Sbjct: 701 ELAVEGNGPVESSAVLT-------------------KAVKRPNEDSDEDEEKGAV--VPP 717

Query: 424 PKDFFRIRQIQKAR 426
             D +R RQ ++ R
Sbjct: 761 VHDIYRARQQKRIR 717

[Close]

BLAST of Cucsa.059160 vs. Swiss-Prot
Match: SUF_DROME (Protein suppressor of forked OS=Drosophila melanogaster GN=su(f) PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-43
Identity = 134/429 (31.24%), Postives = 210/429 (48.95%), Query Frame = 1


Query: 4   MLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKHFLD 63
           +L FAYA+ EE R   +    +Y  LL        L ++Q+++F RR EG+++AR  F  
Sbjct: 374 LLYFAYADFEEGRLKYEKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKSARSIFKK 433

Query: 64  ARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARLNDD 123
           AR+     YH++VA A+M +   KD +IA  +FE G+KRF   P Y++ Y D+L+ LN+D
Sbjct: 434 AREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNED 493

Query: 124 RNIRALFERALST--LPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGE-DG 183
            N R LFER LS+  L   +S EVW RF+ FE   GDL+S++KVE+RR        E +G
Sbjct: 494 NNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVFENLKEYEG 553

Query: 184 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 243
             T +     +V RY F+DL+PCTS++L ++   E +   ++K      + GG    +TG
Sbjct: 554 KETAQ-----LVDRYKFLDLYPCTSTELKSIGYAENVGIILNK------VGGGAQSQNTG 613

Query: 244 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 303
                S + P   +  PD SQM+ + P       P A     P        +A G    V
Sbjct: 614 EVETDSEATP--PLPRPDFSQMIPFKPR------PCAHPGAHP--------LAGG----V 673

Query: 304 FDEILKATPAALIAFLANLP---AVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVS 363
           F +     P AL A  A LP   +  GP   V+++  + +  +LP      +G       
Sbjct: 674 FPQ-----PPALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLPDSAPQPNGDNELS-- 733

Query: 364 GGPVPTTSDLSGSSK--SHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQ-PMPKD 423
               P   DL+ S        + + ++H+      +R+      D+    +Q+  P   D
Sbjct: 734 ----PKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRRRRLLPGGDDSDDELQTAVPPSHD 760

[Close]

BLAST of Cucsa.059160 vs. TrEMBL
Match: A0A0A0KZK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1)

HSP 1 Score: 887.5 bits (2292), Expect = 6.8e-255
Identity = 449/450 (99.78%), Postives = 450/450 (100.00%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH
Sbjct: 248 DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 307

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYIL+YADFLARL
Sbjct: 308 FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILKYADFLARL 367

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG
Sbjct: 368 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 427

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG
Sbjct: 428 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 487

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 300
           SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV
Sbjct: 488 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 547

Query: 301 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 360
           FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP
Sbjct: 548 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 607

Query: 361 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 420
           VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ
Sbjct: 608 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 667

Query: 421 IQKARGATSSQTGSASYGSAISGDLSGSTG 451
           IQKARGATSSQTGSASYGSAISGDLSGSTG
Sbjct: 668 IQKARGATSSQTGSASYGSAISGDLSGSTG 697

[Close]

BLAST of Cucsa.059160 vs. TrEMBL
Match: F6H9L6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00710 PE=4 SV=1)

HSP 1 Score: 639.4 bits (1648), Expect = 3.2e-180
Identity = 327/457 (71.55%), Postives = 380/457 (83.15%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDML++AYAELEESRG++Q AKKIYESLL DGVNATAL HIQFIRFLRR EGVEAARK+
Sbjct: 453 DSDMLRYAYAELEESRGAIQPAKKIYESLLGDGVNATALVHIQFIRFLRRTEGVEAARKY 512

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHV+VAYAMMAFCLDKDPK+AHNVFE G+KRFM+EP YILEYADFL+RL
Sbjct: 513 FLDARKSPNCTYHVFVAYAMMAFCLDKDPKVAHNVFEAGLKRFMHEPGYILEYADFLSRL 572

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALS+LP +ES EVWKRF  FEQTYGDLASMLKVE+RRKEALS+TGEDG
Sbjct: 573 NDDRNIRALFERALSSLPPDESVEVWKRFTQFEQTYGDLASMLKVEQRRKEALSRTGEDG 632

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
            + LESSLQDVVSRYSFMDLWPC+S DLD+L RQEWLAKNI+K  EKS++  G G  +  
Sbjct: 633 TTALESSLQDVVSRYSFMDLWPCSSRDLDHLARQEWLAKNINKKVEKSAILKGVGSTEKS 692

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQI--LGILPTATASGLPA---NPSNP-VSVAS 300
           ++GF ++S P+TKV YPDTSQMV+YDP Q    G LP+ TA  LP+     SNP V + S
Sbjct: 693 ASGFTTNSNPATKVFYPDTSQMVVYDPRQKPGTGALPSTTAPVLPSISGTLSNPSVPMVS 752

Query: 301 GAPTSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPA 360
             P +  DEILK+TP AL+AF+ANLPAV+GP+PDVD+VLS+CL+S++ T           
Sbjct: 753 SRPANPLDEILKSTPPALVAFIANLPAVEGPSPDVDVVLSICLQSNVST----GQTGLST 812

Query: 361 QVSGGPVPTTSDLSGSSKSHAF-SNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPK 420
           Q++ GPVP+TSDLSGSSKSH   S SS K  RD+Q GKRKD DRQED+E+ T QS P+P+
Sbjct: 813 QLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDETATAQSLPLPR 872

Query: 421 DFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG 451
           D F+IRQI+KARG T+SQTGSASYGSA SG+LSGSTG
Sbjct: 873 DVFKIRQIRKARGGTTSQTGSASYGSAFSGELSGSTG 905

[Close]

BLAST of Cucsa.059160 vs. TrEMBL
Match: B9H057_POPTR (Suppressor of forked family protein OS=Populus trichocarpa GN=POPTR_0003s10540g PE=4 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 2.1e-179
Identity = 330/452 (73.01%), Postives = 378/452 (83.63%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSD LK+AYAELEESRG++Q A+KIYESLL DGVNATALAHIQFIRFLRRNEGVEAARK+
Sbjct: 320 DSDTLKYAYAELEESRGAIQPARKIYESLLGDGVNATALAHIQFIRFLRRNEGVEAARKY 379

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSP+C+YHVYVAYA++AFCLDKD KIAHN+FE G+KRFM+EP YILEYADFL+RL
Sbjct: 380 FLDARKSPDCSYHVYVAYALIAFCLDKDSKIAHNIFEAGLKRFMHEPVYILEYADFLSRL 439

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           ND+RNIRALFERALS+LP EES EVWKR+I FEQTYGDLASMLKVE+RRKEALS+TGEDG
Sbjct: 440 NDERNIRALFERALSSLPPEESVEVWKRYIQFEQTYGDLASMLKVEQRRKEALSRTGEDG 499

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           AS LESSLQDVVSRYSFMDLWPC+S DLD+L RQEWLAKNI+K +EKS++  G   LD  
Sbjct: 500 ASALESSLQDVVSRYSFMDLWPCSSKDLDHLARQEWLAKNINKKAEKSAVSNGPATLDKI 559

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQIL--GILPTATASGLPANPSNPVSVASGAPT 300
            AG  S+S  S KV+YPDTSQ VIYDP Q L  GI P+ TASG  A  SNP+S   G   
Sbjct: 560 PAGLASNSNVSGKVIYPDTSQTVIYDPRQKLEAGIPPSTTASGFKA-ASNPLSNPIGLAP 619

Query: 301 SVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSG 360
           +VFDE+LKATP ALI+FLANLP V+GP P+VDIVLS+CL+SD+P     KSG T   +  
Sbjct: 620 NVFDEVLKATPPALISFLANLPVVEGPAPNVDIVLSICLQSDVPVGKTGKSGTTQTPMLS 679

Query: 361 GPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRI 420
           G  P TSDLSGSS+S    + S   TRD+QSGKRKD DRQE++E+ TVQSQP+P+D FRI
Sbjct: 680 G--PATSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDRDRQEEDETATVQSQPLPRDVFRI 739

Query: 421 RQIQKAR-GATSSQTGSASYGSAISGDLSGST 450
           RQIQK+R  AT+SQTGS SYGSA+SGDLSGST
Sbjct: 740 RQIQKSRAAATTSQTGSVSYGSALSGDLSGST 768

[Close]

BLAST of Cucsa.059160 vs. TrEMBL
Match: A0A067KWM7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10295 PE=4 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 2.3e-178
Identity = 323/457 (70.68%), Postives = 374/457 (81.84%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DS+MLK+AYAELEESRG++Q AKKIYE LL DGVN TALAHIQFIRFLRRNEGVEAARK+
Sbjct: 290 DSEMLKYAYAELEESRGAIQPAKKIYECLLGDGVNTTALAHIQFIRFLRRNEGVEAARKY 349

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYA+MAFCLDKDPK+AHNVFE G+KRFM+EP YILEYADFL+RL
Sbjct: 350 FLDARKSPNCTYHVYVAYALMAFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLSRL 409

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALS+LP EES EVWKRF  FEQTYGDLASMLKVE+RRKEALS+TGEDG
Sbjct: 410 NDDRNIRALFERALSSLPPEESVEVWKRFTQFEQTYGDLASMLKVEQRRKEALSRTGEDG 469

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           A  LESSLQDV SRYSFMDLWPC+S DLD+L+RQEWLAKN SK +EKS++  G G +D  
Sbjct: 470 ALALESSLQDVASRYSFMDLWPCSSKDLDHLSRQEWLAKNTSKKTEKSAVSNGLGIVDKV 529

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQI----LGILPTATASGLPANPS-NP-VSVAS 300
           +    ++S  S K++YPDTS MVIY+P Q          TA  SG  ++PS NP + +  
Sbjct: 530 NTSAANNSSISAKIIYPDTSCMVIYEPKQKQETGTSTSTTAPGSGTASSPSINPIIGLVG 589

Query: 301 GAPTSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPA 360
              T+ FDEILKATPA L +FLANLP V+GPTP+VDI+LS+CL+SD+PT  + K G +  
Sbjct: 590 SEATNAFDEILKATPATLRSFLANLPTVEGPTPNVDIILSICLQSDIPTGQMGKLGTSAV 649

Query: 361 QVSGGPVPTTSDLSGSSKSH-AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPK 420
            +  GP P TSDLSGSSKS    S SS + +RD+QSGKRK  DRQE++E+ TVQSQP+P+
Sbjct: 650 PLPAGPAPATSDLSGSSKSRPVLSGSSFQQSRDRQSGKRKGVDRQEEDETATVQSQPLPR 709

Query: 421 DFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG 451
           D FRIRQIQK+R  T SQTGSASYGSA+SGDLSGSTG
Sbjct: 710 DVFRIRQIQKSRVGTVSQTGSASYGSALSGDLSGSTG 746

[Close]

BLAST of Cucsa.059160 vs. TrEMBL
Match: B9S078_RICCO (Plant RNA cleavage stimulation factor, putative OS=Ricinus communis GN=RCOM_1299930 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 1.2e-177
Identity = 325/454 (71.59%), Postives = 372/454 (81.94%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DS+MLK+AYAELEESRG++Q AKKIYE+LL DGVNATALAHIQFIRFLRRNEGVEAARK+
Sbjct: 318 DSEMLKYAYAELEESRGAIQPAKKIYETLLGDGVNATALAHIQFIRFLRRNEGVEAARKY 377

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYA+MAFCLDKDPK+AHNVFE G+KRFM+EP YILEYADFL+RL
Sbjct: 378 FLDARKSPNCTYHVYVAYALMAFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLSRL 437

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDD+NIRALFERALS+LP EES EVWKRF  FEQTYGDLASMLKVE+RRKEALS+TGEDG
Sbjct: 438 NDDKNIRALFERALSSLPPEESVEVWKRFTQFEQTYGDLASMLKVEQRRKEALSRTGEDG 497

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           AS LE SLQDV SRYSFMDLWPC+S DLD+L RQEWLAKNISK  EKS++  G G LD  
Sbjct: 498 ASALEGSLQDVASRYSFMDLWPCSSKDLDHLARQEWLAKNISKKMEKSTISNGLGILDRV 557

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQI----LGILPTATASGLPANP-SNPVSVASG 300
           S G  S+S  S KV+YPDTS M IY+P Q     + +  TAT  G  +NP SN +    G
Sbjct: 558 STGLKSNSAVSAKVIYPDTSSMAIYEPRQKHEVGISLSTTATGFGSASNPSSNTIVGLVG 617

Query: 301 APTSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQ 360
           +  + FDEILKATP ALI+FL+ LP V+GPTP+VDIVLS+CL+S+L    + K G +PA 
Sbjct: 618 SGANAFDEILKATPPALISFLSTLPTVEGPTPNVDIVLSICLQSELTNGQMGKLGTSPA- 677

Query: 361 VSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDF 420
           V   P P TSDLSGSSKS       LK +RD+QSGKRKD +RQE++E+ TVQSQP+P+D 
Sbjct: 678 VPAPPAPATSDLSGSSKSRPV----LKPSRDRQSGKRKDIERQEEDETATVQSQPLPRDI 737

Query: 421 FRIRQIQKARGATSSQTGSASYGSAISGDLSGST 450
           FRIR  QKAR  T+SQTGSASYGSA+SGDLSGST
Sbjct: 738 FRIRHSQKARVGTASQTGSASYGSALSGDLSGST 766

[Close]

BLAST of Cucsa.059160 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 532.7 bits (1371), Expect = 2.2e-151
Identity = 280/456 (61.40%), Postives = 351/456 (76.97%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DS+MLK+A+AE+EESRG++QSAKK+YE++L  G +  +LAHIQ++RFLRR EGVEAARK+
Sbjct: 298 DSEMLKYAFAEMEESRGAIQSAKKLYENIL--GASTNSLAHIQYLRFLRRAEGVEAARKY 357

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSP+CTYHVY+A+A MAFC+DK+PK+AHN+FE+G+K +M+EP YIL+YADFL RL
Sbjct: 358 FLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTRL 417

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLP+E+SAEVWKRFI FEQTYGDLAS+LKVE+R KEALS  GE+G
Sbjct: 418 NDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEEG 477

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           +S  ESSLQDVVSRYS+MDLWPCTS+DLD+L RQE L KN++K + K++LP     + + 
Sbjct: 478 SSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAGKTNLPHVPAAIGSV 537

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDP---SQILGILPTATASGLPANPSNPVSVASGAP 300
           ++        S+KVVYPDTSQMV+ DP   S+         AS     PS   + A+   
Sbjct: 538 AS--------SSKVVYPDTSQMVVQDPTKKSEFASSANPVAASASNTFPSTVTATATHGS 597

Query: 301 TSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVS 360
            S FDEI K TP AL+AFLANLP VDGPTP+VD+VLS+CL+SD PT   VK         
Sbjct: 598 ASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFA---AK 657

Query: 361 GGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFR 420
           G P P+ +D SG ++       S +  RD+++ KRKD DRQE++++ TVQSQP+P D FR
Sbjct: 658 GNP-PSQNDPSGPTR-----GVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFR 717

Query: 421 IRQIQKARG-ATSSQ--TGSASYGSAISGDLSGSTG 451
           +RQ++KARG ATSSQ  TGS SYGSA SG+LSGSTG
Sbjct: 718 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGSTG 734

[Close]

BLAST of Cucsa.059160 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus])

HSP 1 Score: 887.5 bits (2292), Expect = 9.8e-255
Identity = 449/450 (99.78%), Postives = 450/450 (100.00%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH
Sbjct: 316 DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 375

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYIL+YADFLARL
Sbjct: 376 FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILKYADFLARL 435

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG
Sbjct: 436 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 495

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG
Sbjct: 496 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 555

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 300
           SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV
Sbjct: 556 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 615

Query: 301 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 360
           FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP
Sbjct: 616 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 675

Query: 361 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 420
           VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ
Sbjct: 676 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 735

Query: 421 IQKARGATSSQTGSASYGSAISGDLSGSTG 451
           IQKARGATSSQTGSASYGSAISGDLSGSTG
Sbjct: 736 IQKARGATSSQTGSASYGSAISGDLSGSTG 765

[Close]

BLAST of Cucsa.059160 vs. NCBI nr
Match: gi|700199750|gb|KGN54908.1| (hypothetical protein Csa_4G594420 [Cucumis sativus])

HSP 1 Score: 887.5 bits (2292), Expect = 9.8e-255
Identity = 449/450 (99.78%), Postives = 450/450 (100.00%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH
Sbjct: 248 DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 307

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYIL+YADFLARL
Sbjct: 308 FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILKYADFLARL 367

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG
Sbjct: 368 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 427

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG
Sbjct: 428 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 487

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 300
           SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV
Sbjct: 488 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 547

Query: 301 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 360
           FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP
Sbjct: 548 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 607

Query: 361 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 420
           VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ
Sbjct: 608 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 667

Query: 421 IQKARGATSSQTGSASYGSAISGDLSGSTG 451
           IQKARGATSSQTGSASYGSAISGDLSGSTG
Sbjct: 668 IQKARGATSSQTGSASYGSAISGDLSGSTG 697

[Close]

BLAST of Cucsa.059160 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo])

HSP 1 Score: 875.5 bits (2261), Expect = 3.9e-251
Identity = 441/450 (98.00%), Postives = 447/450 (99.33%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDMLK+AYAELEESRGSLQ+AKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH
Sbjct: 316 DSDMLKYAYAELEESRGSLQAAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 375

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNE TYILEYADFLARL
Sbjct: 376 FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNESTYILEYADFLARL 435

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQ GEDG
Sbjct: 436 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQMGEDG 495

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG
Sbjct: 496 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 555

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 300
           SAGF+SHSIPSTKVVYPDTSQMVIYDPSQILGILPTAT SGLPANPSNPVSVASGAPT+V
Sbjct: 556 SAGFVSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATTSGLPANPSNPVSVASGAPTNV 615

Query: 301 FDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 360
           FDEILKATPAALIAFLANLPAVDGPTPD+DIVLSVCLESDLPTVPLVKSGATPAQVSGGP
Sbjct: 616 FDEILKATPAALIAFLANLPAVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGP 675

Query: 361 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQ 420
           VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQP+PKDFFRIRQ
Sbjct: 676 VPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQ 735

Query: 421 IQKARGATSSQTGSASYGSAISGDLSGSTG 451
           IQKARGATSSQTGSASYGSAISGDLSGSTG
Sbjct: 736 IQKARGATSSQTGSASYGSAISGDLSGSTG 765

[Close]

BLAST of Cucsa.059160 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus])

HSP 1 Score: 643.7 bits (1659), Expect = 2.5e-181
Identity = 335/376 (89.10%), Postives = 345/376 (91.76%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH
Sbjct: 316 DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 375

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYIL+YADFLARL
Sbjct: 376 FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILKYADFLARL 435

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG
Sbjct: 436 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 495

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
           ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG
Sbjct: 496 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 555

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 300
           SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV
Sbjct: 556 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATASGLPANPSNPVSVASGAPTSV 615

Query: 301 FDEILKATPAALIAFLANLPAVDGPTP-DVDIVLSVCLESDLPTVPLVKS--GATPAQVS 360
           FDEILKATPAALIAFLANLPAVDG    +   V S  +  D   +  ++   GAT +Q  
Sbjct: 616 FDEILKATPAALIAFLANLPAVDGQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTG 675

Query: 361 GGPVPT--TSDLSGSS 372
                +  + DLSGS+
Sbjct: 676 SASYGSAISGDLSGST 691

[Close]

BLAST of Cucsa.059160 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-20
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 396 DRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG 451
           D QEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG
Sbjct: 638 DGQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG 692

HSP 2 Score: 639.4 bits (1648), Expect = 4.7e-180
Identity = 327/457 (71.55%), Postives = 380/457 (83.15%), Query Frame = 1


Query: 1   DSDMLKFAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIRFLRRNEGVEAARKH 60
           DSDML++AYAELEESRG++Q AKKIYESLL DGVNATAL HIQFIRFLRR EGVEAARK+
Sbjct: 317 DSDMLRYAYAELEESRGAIQPAKKIYESLLGDGVNATALVHIQFIRFLRRTEGVEAARKY 376

Query: 61  FLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNEPTYILEYADFLARL 120
           FLDARKSPNCTYHV+VAYAMMAFCLDKDPK+AHNVFE G+KRFM+EP YILEYADFL+RL
Sbjct: 377 FLDARKSPNCTYHVFVAYAMMAFCLDKDPKVAHNVFEAGLKRFMHEPGYILEYADFLSRL 436

Query: 121 NDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVEKRRKEALSQTGEDG 180
           NDDRNIRALFERALS+LP +ES EVWKRF  FEQTYGDLASMLKVE+RRKEALS+TGEDG
Sbjct: 437 NDDRNIRALFERALSSLPPDESVEVWKRFTQFEQTYGDLASMLKVEQRRKEALSRTGEDG 496

Query: 181 ASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNSEKSSLPGGTGFLDTG 240
            + LESSLQDVVSRYSFMDLWPC+S DLD+L RQEWLAKNI+K  EKS++  G G  +  
Sbjct: 497 TTALESSLQDVVSRYSFMDLWPCSSRDLDHLARQEWLAKNINKKVEKSAILKGVGSTEKS 556

Query: 241 SAGFMSHSIPSTKVVYPDTSQMVIYDPSQI--LGILPTATASGLPA---NPSNP-VSVAS 300
           ++GF ++S P+TKV YPDTSQMV+YDP Q    G LP+ TA  LP+     SNP V + S
Sbjct: 557 ASGFTTNSNPATKVFYPDTSQMVVYDPRQKPGTGALPSTTAPVLPSISGTLSNPSVPMVS 616

Query: 301 GAPTSVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPA 360
             P +  DEILK+TP AL+AF+ANLPAV+GP+PDVD+VLS+CL+S++ T           
Sbjct: 617 SRPANPLDEILKSTPPALVAFIANLPAVEGPSPDVDVVLSICLQSNVST----GQTGLST 676

Query: 361 QVSGGPVPTTSDLSGSSKSHAF-SNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPK 420
           Q++ GPVP+TSDLSGSSKSH   S SS K  RD+Q GKRKD DRQED+E+ T QS P+P+
Sbjct: 677 QLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDETATAQSLPLPR 736

Query: 421 DFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG 451
           D F+IRQI+KARG T+SQTGSASYGSA SG+LSGSTG
Sbjct: 737 DVFKIRQIRKARGGTTSQTGSASYGSAFSGELSGSTG 769

The following BLAST results are available for this feature:

BLAST of Cucsa.059160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CTF77_ARATH	3.8e-150	61.40	Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana GN=CSTF77 PE=1 SV...	[more]
CSTF3_PONAB	4.8e-44	31.80	Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2 SV=1	[more]
CSTF3_HUMAN	4.8e-44	31.80	Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1 SV=1	[more]
CSTF3_MOUSE	4.8e-44	31.80	Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1	[more]
SUF_DROME	1.4e-43	31.24	Protein suppressor of forked OS=Drosophila melanogaster GN=su(f) PE=1 SV=2	[more]

BLAST of Cucsa.059160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK4_CUCSA	6.8e-255	99.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1	[more]
F6H9L6_VITVI	3.2e-180	71.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00710 PE=4 SV=...	[more]
B9H057_POPTR	2.1e-179	73.01	Suppressor of forked family protein OS=Populus trichocarpa GN=POPTR_0003s10540g ...	[more]
A0A067KWM7_JATCU	2.3e-178	70.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10295 PE=4 SV=1	[more]
B9S078_RICCO	1.2e-177	71.59	Plant RNA cleavage stimulation factor, putative OS=Ricinus communis GN=RCOM_1299...	[more]

BLAST of Cucsa.059160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17760.1	2.2e-151	61.40	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cucsa.059160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695232\|ref\|XP_011653953.1\|	9.8e-255	99.78	PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus]	[more]
gi\|700199750\|gb\|KGN54908.1\|	9.8e-255	99.78	hypothetical protein Csa_4G594420 [Cucumis sativus]	[more]
gi\|659082815\|ref\|XP_008442046.1\|	3.9e-251	98.00	PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo]	[more]
gi\|778695235\|ref\|XP_011653954.1\|	2.5e-181	89.10	PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus]	[more]
gi\|778695235\|ref\|XP_011653954.1\|	4.9e-20	98.18	PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR008847	Suf
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006397	mRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042868	antisense RNA metabolic process
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0006397	mRNA processing
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0060968	regulation of gene silencing
biological_process	GO:0031123	RNA 3'-end processing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.059160.1	Cucsa.059160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 121..155 score: 6.3E-5coord: 17..50 score: 150.0coord: 87..119 score:
IPR008847	Suppressor of forked	PFAM	PF05843	Suf	coord: 39..342 score: 2.2
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 9..136 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 2..215 score: 1.93
None	No IPR available	PANTHER	PTHR19980	RNA CLEAVAGE STIMULATION FACTOR	coord: 1..423 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.059160	Csa4G594420	Cucumber (Chinese Long) v2	cgycuB042
Cucsa.059160	MELO3C008873	Melon (DHL92) v3.5.1	cgymeB047
Cucsa.059160	CSPI04G21310	Wild cucumber (PI 183967)	cgycpiB043
Cucsa.059160	CsaV3_4G031660	Cucumber (Chinese Long) v3	cgycucB045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None