Cucsa.059120 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.059120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationscaffold00614 : 1211607 .. 1219299 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGCGGCTGCCGCACGTTTCCTTGTAGTCGTCGTCGAACATACAATCCGGTTGCCATCAATCCACTCGCGTCGCTTTGGTCCTGCTCATCGTCGCAGGTCACCTTATCGTCGTTTTTTTTtCCTGAGGTAAGCTTAAAACATGGTTGAAATTTTtGTTTTTACTTTAATAAAGCGTGAAATGAATACTATGCGTACAAACAACAACATAAATGAAGTTTTGAGATGTGGGTATTTCAAGCTTTATTATGTTCATTAAGAATCTTCAATTTCACTAACTTTACTTTTAATTCTCTAATTTCAGTTTTAATTTCAATAGTTTTCTTGATCTTCTTGAAGTTTTATTTATTTATTTATTTTTCTATGTATTGATTTGGGGTTAAAGAATTTAGGGTTGGTGTATTTTTTAGGTGTCAAATGCAAATTATCTATGTGAGTCTGTAATTGGTTCATTTTATATACATTTGGACTATTTTCAACTCTAGTAAACAATGCACTACTACTGGGAAACTTATTGGAAAAAATCTATAGAAACTTTTTAGGTTGTTAATCAAAGTGAATGTCATGAACCATTTACTTCTTGCGTATTTTACAGGTTTTTTtGAAAGTTTTGATAGTTAAAGAGGCACTTAGATACTTCTTAGGTACTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGGAATGCTACTTTCACAAAAGCCCATGGGATGCTCGAATCCGAAGCAGCCACCTAGCAAATCCCTATCCCAAGTTGGAGTGCCCAAATCAAACCCTAGCCTGCCCGATTTCCTTCCATTCTTTTCCTCTATGTAGATCTTCCTACAGTTTCCCAGATTTTTATGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTCTTTGGTGAAGAGATCCTTTGTAATAACGGATGATTTCAGCTTTAGTTGAGATGTTAACCTTTATTACTTATTAGGACACTATTTTTGGTTTGTTTACCAGTAATTtTTTTTtATAATTTTGTTCACGGTTTAGTTTGTTTAAATTTCTTTTTGCTGTGTGATTTATCACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGGTTGGAATTACTTTCAATATCACAAACGTTTTGTTTCTAGTTCTTTGCATGGTCTTTATTGCAGCACCATGTTGATATAATTTTTtGGCCAACTTTTGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTGGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCTTCTGTTCAGATAGGTTTAGTGCCTCGCGTTGGGCGTCTGTGTTTAATGACGTTTGTACTTATTCACTGGGTTTTATTCTTAAGCCTTTTATTTCTCAATAGGTTAGGATCTGTTCGGTTCCTTCTGTGCTGTCATGTTTGTATGTCAAACAGTTTTTCTGTTGCAATTGTTTATTTTTATTATTTTGGTTGACCCTACTTTCTTTCATCTTGTTCTCTCCATGAAAGTTCGGTTCCTTCAGGGAAGTCACTTTTGTATGTAAATTTGAAAGTTTAGGTTCTTCGATTCAATGATCCTTCGTCTTCTTTCTATTTTTCCCAAAGAAGTGTTCCATCATGGGTGAAGGGATTCCAAATTTTGGGCTCCCAAGCCATCTAAGGGTTTCTCTTGTAACACTTTTTtTTtCATATATTCTTTGCTCCCTTCCTCTCTGTTTGGGTGCGTTTGCATTCTCCTCTCTTTGGCCAGCTAAAACTTCTAATGATGTTGAAGTCTTTGTTTGACAAGTTTGATGGGAAAGTAAACACACAAGATCTTCTACAAAGACATTATCATTCACTCAATTGCAATAGTATATTTTTTGTTGTAAGGAGGATGACCATGAATATTTTTTAGTCTTTTTATTTTGTGTGTGTCCAGTCTAGCTTACACACATACCGACTAATCTTGCAAGACAACTTGTCTAACCCTACAGTATTTGGATACAGGAACAATAGGATTTCTGGAAGGTCTTGTGGAGTGTAGTTGGGGTATTTTTTtGCTACACCCCAACTAAATGTGTAGGATATTAAAACTTCAGTAGGTGACTACCATGGATTGAACCTATAGTCTCTTAGTCTTAGAAGCATCTTATGGCATAGTTGTTTTTGTTCATTTTGTGGGAATTCAGATAGAGGAACAATAGGATTTTTAGAGGGTCTAAAAGATCTGGAGATGATCCCTGTGTGGGTGTTTGTTCGCTTTAATTCCTCATTATGGGTGTTTGATATTCGAGCTTTTTGTAATCGCCAACATCATTTCATTCTTTTTGATTGAAATCCTTTCTTGTATTTGTGCTGAGGCTGTTTTCTTTTTtATTTGTTTTTGTGGTATGCCCTTTACCTCCATTCCTCTCAATAAAAGCTTGGTTTCTTATATAAAAaGGAAAAAGAAAATTTTATGGCAAGGCTTCATTGTATAATTGCATTATTCTAACAATTCAAGCATGTAATAGATTTTCTTTTTCATGGTAACCGTAACTTCACCAGAAATTATCATGGAAAGCTTACATTCAAGCAACTAATTTATAGAAATTTGAACTCTGATTAATTGTCATATTTAAAGAATGTTATTATAATAAATTTCATCCTATCAAAAGTTCAGAATCAGAGGAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGTAGGTCTGCTCTCTCCTCTCTCCTCTCTCCTCTTTCTACTGGCTTATCCTTTGATTTTCTGTACCTTTCTGTGATTTCTCCGACATCTTCTTCAATCCTTGGCTTCACTTTTAGTCTTCTCTGGGGTTTCTTCAACTTAGTTCTTGCTCATGGAAGTAGCAAGTTGCAAAATACTTCATATGCACTTTTGCGTTTGGCTGGATAACGGCCACTTTCACGTGGAGGACGTGGAAGCTCAACGATCCCTATTCATCCCAGAAGCCCATCTGAATTGGTTCCTTGTAGCGATAGCAGAGTTAGTCCGAGGCTTGAAGGATCGGTTCTTTCTGAAATTTGGGGAGTTAGACCGTGGGAGAACGAAGATCTCAAATTTCAGATTTGAAATTGGCGGGGTTTTATGTTGCGATTTTTGGCCGGCTTCAGGTGGGCGTTCAACCATCAAGGTTTCTTCAAAGGAAGACAAAGAGGGGTGGTCGTTCTTCCTCTAGATGTGGGAACAGTTTATCAAACTTGGAGAATAAGAAATGGTTCTCAAGTCATCGGCTTCCAACTAAACTCCCTTCGCAGTTCCAGAGATTGTCTAATGCTGATGGAGTTAAGACCGGATTTTTTTTtAGCTAATGAGCAGAAGTTAGGAAACCCAAGCTATAACAAAGGTAAGCTTGAATCCTTACAGCCTCCCATGTTTTGAAGTCAGGAATTCAAAACCCCTTGACCTTTGTTTGAGCACTAGCAAAACAGAGCGTTCACTGGGGTCATTTGCATTTCCACCACTCAAGTAGCTGACGTCTCCTTATTGGGTGCACAAGAATGAAGAGGTTATTGAGGAAGATTTTAGCACTATGTGGATCATTTCCAGGCTCTTCGTATATAATGATTGGGGAAGGATATTGCCAAAACTCTGGAGGCTCACTTTCAAGACAAAATCAGCATCAATCCTTTGTATGCTGATAAGGCATTAATCCGCCTCTCTCGAAGGAATTTGGAAGATTTGGTTGAGACTCCTAGTAAATGCCAGCATATTGGAATCTTTCATCTTTTAGTAAAAAAaTGGAACAAGTTCAAACATGGCAGGCCATTTATTCGAGGATTTGGAGGGTGGTTGTTCATCAACAACTTACTGTTAGATTATTGGAAAAATGATGTCTGTCTTTGTTGCAATTAGGAATTATTTCGGTGGCCTTGAGAGCATATCCTTGGATACATTGAATATGGTTGATGTGTCTAAAGATAAAATTAAGGTGAGAAAATCTCTGTGGTTTTTTACCAACAATGATAATAGTAGGATGCTTTTTTTGGAAAATTTTATCTCAACTTTGGAGATATTGAAATTATTGAAGAGCCCTCAGCCGTTCAAGATGCCCTCTTTATTAAGTATTTCTCAAATCCGATAGACTTAGCAAGAATTGTTCTTGTCTTAAAAGATGAAGGGCTAGATTTGAATGTTTCTAACCAGGAATGAGATCTTCTCAATTTGTCTCTTTCAAAGCCAAGCTTCTCAAGGAACCCATGCGTTGACTTCAATAGTAATCTCGACCAAGCTTTACCGGTCAGGGCTCCTTGCTCATTTTGTCGCAATCTTCCTCCCATTGCAGTAAATTTGGTTAATCAATTCAAACTAAGAGGGAACAAGAGAGAAAAATGTGACTGAATCCCTTGCTTTGCCCAATAAGAATCAATGCGGCCACACAACAACCAAGCAATTAAACTCCTCTCAAATTAATTCGGCTGACATCTTTTTAAATAAAGGATAGATGGCACCTCTCACACGTCAGACACTAATAACCTGCAAAATTTTCGGCAGCTGCTCACTAGGCCATAAGAACTTTTAGTTCCCTCAACGGCTGCTCTAGAACCCTTAAAAATACCTTCAAACTAAGCTCATTTCAACTCATCTTTAGGTTCTCTCTCATCTTCTTCTCTCCAACATTCCTCAGCAAAGTCAGGCCCAAGAGCAAAATAAAAAAGAAAGAAACATTACAAAATCTTCCCACATTACCTCAAGCCATTCCCAAATTTTTTCATTTGAAAGAAAAAATCTAAGAAGTCTTAGGCTAAACAATCCTTAAAAGCCAAGATAATAGGAGATCAAGCTCTTGATTTGATAAAAACAATCCGCGCCCACTCTCATTCCTTAGTCCAATCCAGCATATCCAAGTTTTTAGAGGCCAATCCAGACTTGTTGAATGTTAGTTGTACCCAGATTCTAGCTCCAACTCGTCCTACGAATTGAATTGGTCATGACTCTCACCCTACACAGTTTAAGTACTTAGAGCTCTATTTGCCCAACTTGAAGGTAAAACTTTTTAGGGGCTCTTTGAGCAAAACCCCTATCAATCCCTCTAGAAAGAAGGGTGAGTCTTCCTTTGAATCTCCTTTCAACGTTAGCAATGAGAAATTCGAGTTTTATGCTAAGTAAGTCATCTGAGCTTGAGAGGCAGAAGCATTTTGAGTCTTTAGAAACAGATCTTGCACTATTTCATTGCAACGAAGACTTGAAGTCTGAAATTTTGTCCTTTGCTACTTGCTCGTCCCCAGTCTTGCGAAATACCAGGTTATCGAAAATCATAGTTGCCGACTGTGAAATTATCTTAATTTGATTCTTTAGACAGTTAAATGTAAGTTTCTCAGACGATTGGTCCAATTTCTGGCTTTCCTTAATTTCTCTTCACATAGGTGGCAAGTAAAACCTCGCTGATTGTGGTAGATGACTTGAGATTGGTGTTGATTTTGATCTTTATTTCTTTGGTCTGCCTAAGGAAGTAACTTCTCAGGTTTGTTTTTGGGATAGGCTGATGGTATTGAAAACTTTTTCGAGCTTTCTATGGGTTCAGTTTATATTGGCAAGACAGATTTGGGGCAACTGTTTGCATCTTCTTAGCGGCTCTCTTTCTCTGATCATTTTGAAAATTTGGGTGTGCAAGTTTTCAGTCTCAAATGGGTTCCTTATGAGAGAACTTTAAGTTTTGATTTGTATTTAGCTTTCTACTTTTGTTATATCTTTGAGTCGTTTGTTTTTGTGTGTTTATTTTCCATTGGAATTTGTTTTTTGGTTGCCTTCTTTTTGTTTGCCAACGAAaTAAAAaCTAGCTTCAGTTTTAGTTTTAATTGTATTCTTCTAGTTCTCTTGCTCTTAGTATAATACTCTTGTACTTTGAGCTTAAGTCTCATTTATTATCATAAAGAGGCTTGTCTTTGTTAAAAAAAGTCTAGAATCCAGGTAAACTTTACATCTTCTGTCCCAGGATCGAAACTTGGTTCTGATACCAGTTGATAGAACACTGATGTAGTGTTTCTATTATATTGATATCTCAAACAGAAGAACAATATGAAAATACTAGTGATCCTCAAAAATAGAACCACAATAAGCAGAATTCACAAACAACAAACAGAACTTATCCTAAACAGAATTTGCAAGAACAAATCAATGCAGAAAACATAAAGAAAATTACTTAGAACAAAAGAACCTATTCCTCTGCTTCTCCTCTCTCTCAAGGAGTAATGCAGCCTATTTTGACTCCACAAATTCCGTACCCTTCTCCTCTTCCACCAAGCATTTAACTGCCCCTTCAGATTTAACCGCCCTCTTCACCCTAACTGCTGGTCCCACCCACGTGAGCTTCCTCACTCTCATTTCTGTCAGAATTCTTCCGTGCATCACCCTCACGTGCCATTTTATTTCTTCTATTATATGTAAACAATAATGGGGTCTAACAGATTCCATCCTGGAAAAACGTGGAACTATTAGGCACATTGTGGGAACATACTGGGATACTATTAAGCACGTAATGCTTTGTTAATTTGTTGTTAGTTTGTTGGGTGAGTTGGGGGGTGGAGTTGGGATATTTTTGCTGATTGATATTAACTTTTTACCATTTTGTTCTCAGAATCAGAGTCCTACCCTAACAGATTTTAGAGAAGAATTAAAAGATAATTGTTTTGTGGTTGTTATGCTTATTTTTTATAATGTTAACGATGGAGCATCATGATCAGGATTTGGTAACCTCCGATATTTAATTTCAAGTGAAGAGTATGTCTGGATATATTTTCTATCCACAACTCTCTAGTCTCAGTTAGTTATAATAGTTATCTAATTGATGACAACCTGCTCAAAATATCTATTAAAAAATCTTGAAAGCACCCCCCTTTCTACTTTTTGGAAGTTCATAATAGGTGTTTCTCTCTCACTAGTAAAGTAAATGTTTCATTTGAAAGTGTCTCAATGCAATCCTGTATTTCACCTAAAATCTCTTTGAACTATATTTGAGGAATAACGTGACATCTTTACTTCCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGCCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATTTCTGCCACTTCCCCCATTTGTAGAAACGAAAGGTTGAAGGAGAACTTCAGTCATGTATGTGTATAATTCATCTCTAGTAGAGCTAATAGCATACACTTTTGACTGTTGATTCATGCAAAGATCCTACTATAGTGTATCTGTTTCATTATCCTATGACTATGAGTTTTTTAGTATCAATTTCGAGGTGACAAAAATCCAATTCCAGGTAGATCTTCTATCTCAAGGGATGGCAAAACTATTCCTTGTTTTTCCTTTAATCTATGGCCTTTTCTATATTTTTATGTGGACCATATCTCATTGGCTGTATACATTTTCTTTCATTTGTTTTCGTCATGGAGCCTGTCACCGTCTCACCTT

mRNA sequence

CACCGCGGCTGCCGCACGTTTCCTTGTAGTCGTCGTCGAACATACAATCCGGTTGCCATCAATCCACTCGCGTCGCTTTGGTCCTGCTCATCGTCGCAGGTCACCTTATCGTCGTTTTTTTTTCCTGAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGCCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATTTCTGCCACTTCCCCCATTTGTAGAAACGAAAGGTTGAAGGAGAACTTCAGTCATGTATGTGTATAATTCATCTCTAGTAGAGCTAATAGCATACACTTTTGACTGTTGATTCATGCAAAGATCCTACTATAGTGTATCTGTTTCATTATCCTATGACTATGAGTTTTTTAGTATCAATTTCGAGGTGACAAAAATCCAATTCCAGGTAGATCTTCTATCTCAAGGGATGGCAAAACTATTCCTTGTTTTTCCTTTAATCTATGGCCTTTTCTATATTTTTATGTGGACCATATCTCATTGGCTGTATACATTTTCTTTCATTTGTTTTCGTCATGGAGCCTGTCACCGTCTCACCTT

Coding sequence (CDS)

ATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGCCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGA

Protein sequence

MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS*
Homology
[Close]
BLAST of Cucsa.059120 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.8e-44
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of Cucsa.059120 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.2e-58
Identity = 118/140 (84.29%), Postives = 118/140 (84.29%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of Cucsa.059120 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-50
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P  NTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKI 116
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ  I
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQATI 115

[Close]
BLAST of Cucsa.059120 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.2e-50
Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P  NTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]
BLAST of Cucsa.059120 vs. TrEMBL
Match: A0A061FQD7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044665 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-49
Identity = 93/112 (83.04%), Postives = 106/112 (94.64%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PA NTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

[Close]
BLAST of Cucsa.059120 vs. TrEMBL
Match: A0A061FXJ7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044670 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-49
Identity = 93/112 (83.04%), Postives = 106/112 (94.64%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PA NTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

[Close]
BLAST of Cucsa.059120 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-45
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of Cucsa.059120 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 2.0e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]
BLAST of Cucsa.059120 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of Cucsa.059120 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 118/140 (84.29%), Postives = 118/140 (84.29%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of Cucsa.059120 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P  NTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKI 116
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ  I
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQATI 115

[Close]
BLAST of Cucsa.059120 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-50
Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P  NTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

The following BLAST results are available for this feature:
BLAST of Cucsa.059120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MED11_ARATH2.8e-4473.87Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G... [more]
BLAST of Cucsa.059120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L450_CUCSA9.2e-5884.29Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1[more]
A0A0B0N6V2_GOSAR2.4e-5084.35Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=... [more]
A0A061GG64_THECC3.2e-5085.71Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A061FQD7_THECC2.1e-4983.04Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A061FXJ7_THECC2.1e-4983.04Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
BLAST of Cucsa.059120 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01435.11.6e-4573.87 Expressed protein[more]
BLAST of Cucsa.059120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453808|ref|XP_004144648.1|2.0e-61100.00PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ... [more]
gi|659082827|ref|XP_008442051.1|4.8e-6097.46PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo][more]
gi|700199753|gb|KGN54911.1|1.3e-5784.29hypothetical protein Csa_4G594450 [Cucumis sativus][more]
gi|728830775|gb|KHG10218.1|3.5e-5084.35Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum][more]
gi|590626684|ref|XP_007026238.1|4.5e-5085.71Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.059120.1Cucsa.059120.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..90
score: 1.9
NoneNo IPR availableunknownCoilCoilcoord: 101..118
scor
NoneNo IPR availablePANTHERPTHR22890UNCHARACTERIZEDcoord: 1..117
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.059120Csa4G594450Cucumber (Chinese Long) v2cgycuB042
Cucsa.059120MELO3C008876Melon (DHL92) v3.5.1cgymeB047
Cucsa.059120CSPI04G21350Wild cucumber (PI 183967)cgycpiB043
Cucsa.059120CsaV3_4G031690Cucumber (Chinese Long) v3cgycucB045
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None