Cucsa.059050 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.059050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Exosome complex component RRP4
Location	scaffold00614 : 1143831 .. 1147808 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTCCTCTTTCTCCACGCACGCTGCCCTCCCTATTCACCTTCCAATTtCTTTTTTTtCCGTCTGCCCATCACACCAGCCACCGCCGACCATTACGTCTTGGCCGCCGCAAGTCTCCGTGCATCATCTCAACCGTGTCTGACAAGTCGACTGTCTGATTCTTCAACTGCCGCTCTCGTCCGTAGTTTCGAAAGGTTTCGCCGCTGCAGCCGCGTCTCCCCCACTCGTCAGAGTTCGCCGGAATTCCAAGAGCTTGCCGACGACGTCAACCATCTCTCGCCATTCTTTAGCACGCTGATTCGCCCGTTAGTTTCATTCTATTCCAACCGTCTCTCTTCATCATCTCAGTGTTCATCAAGTAACAGGAGTTTGACATTTCTCACAATTGAAACTTGTTTCTTTTAGGACAAGCATTTCCAAATCTTCTTGTATAAGTCTTTGGCAATTGAGAGACTATTAGCGGTGAGATGATTGTCCAAATTCTTGTGAAGTATCCATTAGTGTCAAGCTCCCAGGCCCATATGTCATTTTAGAAGGTTTTTGTTTTCCTGAAAGTCTATTTGAAGGTTTCAGTATGATCGTCTAGTTTAGAAAGCTTATTTGACTGTAGGATTTTAGTTTTAAGAGCTTATTTGATCGGAAGATTTTGATTTTGAAAGCACTGTGTAGCAAAATTTCAACTGAAAGATTTGCAAACATTCGTTTTTTTTTTtCGTTTAAGAATGTTTGGAAAGGGGACAAATTTTGGACGCTTGATATGGGGCTTGGTTATTAAGTATTTTTGTACTTATTTTTGCTTTTTCAAAATATTTTTAGATGAAGGATCCGGTAATAGTTTTGAAAATAGAAAAGTTTAACATTTTGGCCAAAGGCATCCTAGAAATTGTTTGTTATAAGTTTCTTCATCTGATTTGTATAAGTTGTAAATGTTTATAATTGATATGCTTCACATTGCGATTTTAGCCGCCATATATATTGGAAAATACTAGTTGTTACTCATTATTTGTTTGTTTGTTTTTTTATCACGTGTAATATCTTTGCAAATATTTTGTGATTGTATGTCATATATTGGTCATAAGAATCATGCAACACCACCATGTTCTAACCTAGAAAATTTCCAAATGCAGATATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTACATAATTCTTCATTACTTTTTTtATAATAGATGCTTGGATTGTGTACTCGTCAGTGGATTATATGCATTGTGCTATAATTGAAAATTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGGTTGTCCATGAACTTTGTAATTTGGTTTTtCTTGGCCCTTTTTtGGTCTATTGTTATGATATCTTTTATGATCTAATTGTCTGTACTGGTTATTAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTAAAACCAAACACTTGCTATTTATCTTTTTGGTTTTACATAAAGGTAACATAGAGATATTGGTGAGTAAAACAGACAAGAAAAACTTATTCTGGTGTCATGGTTACAACACTTCAAATAGGAAAAACATGTTACAATGCCCCTCCAGCACTCCATTTTTTTCATACCATCTGATGTGATCTTATTCAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTGGAGTATTCTCTTTTGTTATGAATATAATGGTGCTTACTGTTGCACCAGACTGTGAATTAGCTATGCTTTCTGAAATTTTTTtACTGCAACTGATTCTCTCTGTCTCTCTTAAGAATGGTTGTGTTTGTTGTAACGCCGGGTTAATTGTATTATTTtATTTCTAGaGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTtGAAGAAAATGATGTCATTTGTGTAAGTTTGATAGCCTTTACGTTCTTCTCTCATCAaCGTATCTTCTACCAAATTTGTCACGTGTCATTCGTATAAGGTTTTCTCCTAGATTTTTACATTTTTtAAGAaTTAAACTTTCGCTTTTTTTTtCgTTTtGGGGGGGgggggggggggAaTGTTAATTCTTAGCTAGCCGAATTTATGGTAGGCTATAAATATTTGTGGCTGGCCAGGCATCAATTTATAAACACTACTATGTTTATGCTTAATTTTTCATTTAAGGAACAATAACAATACCACATTCTTTCTCAGGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGGTAAAAATGAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAAACAAAaTAAGTTTAAAATCAAATTTTGTACGTCTCCCATCTCTTCATTGGTTTCTTAGGGGAGACCCCACAGAAAGATTCTTGCTACCATGTGAATACTGATTTATAGTCGAATAGACAAATGTTATGGGGAATTCTAGCTGTTAAAACAGATTGTGGAGATGATTATAAAGTTGGTGCACACGAATGAGGGAGGAAGCCTTGAAGGGATGCCACCAAGATGAAAAGAGGGATAGGAGGAGATAGCGATGGGTGGACAGAAAGAAATACGAAAGATGGTCGCAGAAAAGTGATTTTGGAGAATGGAAAAAAGGAAAAAAAaTATTTTCTAACACGTGAATGGTTATACTAGAAATTATGTCTAATTGTTACAACCATGTTTTTTTTTttCTGAAAAGTTAGCTGAATTCTAAGTCAAATTTAAAAAaCAAAAACAACTTTTTCTAGTTTTCAAAACATAGACTTGGTTTTCTATAACATTAGTAGGAAGTACATAATAACGTAAGAAATTTAAAGATGGAATCTGTGTTTATAGGATTTCAAAAACTAAAAaCAAAAAAaCATATGGTTACCAATCTATTATAAGTTCAAAATTTTGGAGGATAGCTGTATTTGAATATGATATCTTTCAATGCAATTGTTATTAAATTCCTAAAAGCTTTTATGGCATCATCTCATATTGTTTCTTCATGACTGTTATGATTAAAATTTGTGCATATTTATATCCAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTGTATTTTGTTGAATTTTAGATTACCACCAGTTGTCGTATCAGTATAGAATACAATATGTCCTCAATTATTATGCTGTACGTGGTTTCATAAATGTCTAAGAATTACTTTTAGGATTTTACTATATGTCACATTTTTGGCTAGATTAATACTAGACGAAACTTAACTTTGTTAAA

mRNA sequence

GTTCTCCTCTTTCTCCACGCACGCTGCCCTCCCTATTCACCTTCCAATTTCTTTTTTTTCCGTCTGCCCATCACACCAGCCACCGCCGACCATTACGTCTTGGCCGCCGCAAGTCTCCGTGCATCATCTCAACCGTGTCTGACAAGTCGACTGTCTGATTCTTCAACTGCCGCTCTCGTCCGTAGTTTCGAAAGGTTTCGCCGCTGCAGCCGCGTCTCCCCCACTCGTCAGAGTTCGCCGGAATTCCAAGAGCTTGCCGACGACGTCAACCATCTCTCGCCATTCTTTAGCACGCTGATTCGCCCATATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTGTATTTTGTTGAATTTTAGATTACCACCAGTTGTCGTATCAGTATAGAATACAATATGTCCTCAATTATTATGCTGTACGTGGTTTCATAAATGTCTAAGAATTACTTTTAGGATTTTACTATATGTCACATTTTTGGCTAGATTAATACTAGACGAAACTTAACTTTGTTAAA

Coding sequence (CDS)

ATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGaGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTtGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAA

Protein sequence

MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKGSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG*

Homology

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BLAST of Cucsa.059050 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 1.7e-118
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

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BLAST of Cucsa.059050 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-46
Identity = 108/213 (50.70%), Postives = 141/213 (66.20%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL +A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

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BLAST of Cucsa.059050 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.2e-45
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIW+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWV 205

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BLAST of Cucsa.059050 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 5.4e-45
Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     +      VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

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BLAST of Cucsa.059050 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-45
Identity = 106/258 (41.09%), Postives = 157/258 (60.85%), Query Frame = 1


Query: 51  LKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + AS+ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMI 230
           S KYGKL  G  L V P L+ R K H + L   G+D+IL  NG++W+ +H + +      
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSV-- 250

Query: 231 EDQVDKPEQKGSKFEGTFGNQVQEV--YTPLE-TRQNICRTANAIRVL-----STLGFIM 290
              + + E++ S  E  + N+  E+  YT L  +R +IC    A R L     S   F  
Sbjct: 251 --SITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYE 310

Query: 291 TVEVIMEIVNLSISLNID 300
           +  V   + +L++  N+D
Sbjct: 311 SSLVFSNLQDLTVPKNMD 321

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BLAST of Cucsa.059050 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 2.8e-141
Identity = 251/328 (76.52%), Postives = 294/328 (89.63%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+G QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VAD+IP+NYEDGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+YVRALRARYKPEVGDI+VGRV  VAPKRWR++INY QDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           +LT+ PYL+KRRKQHFHHLEQ+GIDLILGCNGFIW+GEHV+    D M+E+QV+K EQ+ 
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVE--ATDDMLEEQVNKTEQQI 244

Query: 241 SKFEGTFGN--QVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
           +K +    +  + ++   PLETRQ++CRTANA+RVLSTLGFI+T+EVI+E VNLS SLN+
Sbjct: 245 TKSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNL 304

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKR 327
           DVHEMLGSEFCVL AEKE ERR+ +KK+
Sbjct: 305 DVHEMLGSEFCVLVAEKEAERRTLNKKK 330

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BLAST of Cucsa.059050 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 2.2e-138
Identity = 242/329 (73.56%), Postives = 285/329 (86.63%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GL+L L  TQK+RL+RA E+L++LS+K NS+ASV +ADTIP+NYEDG LKGHGT +LN
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+YVR LRARYKPEVGDI+VGRV EVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSS+NLPDGIQRRRTA DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 121 LSSINLPDGIQRRRTAEDELNMRAIFEENDVICAEVRGFQHDGLHLQARSQKYGKLQRGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL++  YL+KRRKQH+H+L++YGIDLILGCNGF+W+GEHV+ K  D M+ DQ DKP+ + 
Sbjct: 181 LLSIPSYLVKRRKQHWHYLDEYGIDLILGCNGFVWVGEHVETK--DEMLVDQADKPDSQT 240

Query: 241 SKF--EGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
           SK     T     ++ YTPLETRQNICR ANAIRVLS LGF++T+EV+ME+VNL +S N+
Sbjct: 241 SKTNDHSTSLEGQEQTYTPLETRQNICRIANAIRVLSMLGFVVTIEVVMEVVNLGVSQNM 300

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           D HEMLGSEFCVL AE+E ERRS  K +G
Sbjct: 301 DTHEMLGSEFCVLVAEREAERRSQKKNKG 327

[Close]

BLAST of Cucsa.059050 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 7.2e-137
Identity = 248/332 (74.70%), Postives = 288/332 (86.75%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+G QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+Y+R LRARYKPE GDI+VGRVTE+APKRWRLDIN+ QDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEEND++CAEVRG QHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           Q+LT+SPYL+KRRKQH H+LE++G+DLILGCNGFIW+GEHV+ K +  +IEDQ DK EQ 
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGI--LIEDQTDKAEQL 240

Query: 241 GSKFEGTFGNQVQE---VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISL 300
            +K   +    ++E    YT LETRQNICR ANA+RVL+ LGF +TVEVI E VNLS SL
Sbjct: 241 NTKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSL 300

Query: 301 NIDVHEMLGSEFCVLTAEKEVERRSS-SKKRG 328
           N+D+HEMLGSEF VL AE E  R+S  +KK+G
Sbjct: 301 NLDIHEMLGSEFYVLVAEGEATRKSMFTKKKG 330

[Close]

BLAST of Cucsa.059050 vs. TrEMBL
Match: M5W486_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 5.2e-135
Identity = 248/328 (75.61%), Postives = 284/328 (86.59%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQLSLN TQK+RL+RA E+L+SLSSK NS+ASV VAD+IP+NYEDG+LKGHGT + N
Sbjct: 1   MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CG+VERVNKL+YVRALRARYKPEVGDI+VGRV EVAPKRWR++INY  DAVLM
Sbjct: 61  GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKL RGQ
Sbjct: 121 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTV PYL+KRRKQHFHHLE YGIDLI+GCNGFIW+GEHV  +V D M+ DQV+K EQ  
Sbjct: 181 LLTVPPYLVKRRKQHFHHLENYGIDLIIGCNGFIWVGEHV--QVTDDMVVDQVNKSEQDD 240

Query: 241 SK-FEGTFGNQVQ-EVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
           +K  E +   + Q + YT  ETR+NICR ANAIRVLSTLGF +TVEVI E V+LS S+N+
Sbjct: 241 AKPDENSISPEDQGKNYTRQETRENICRAANAIRVLSTLGFNITVEVITETVDLSTSINV 300

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKR 327
            +HEMLGSEF VL AEKE  RRS +KK+
Sbjct: 301 AIHEMLGSEFYVLVAEKESVRRSMTKKK 326

[Close]

BLAST of Cucsa.059050 vs. TrEMBL
Match: A0A022S5G6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010258mg PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.7e-134
Identity = 241/327 (73.70%), Postives = 285/327 (87.16%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSL+  QK+RLERA E+L+SLSSK NSDASV VAD I +N ED +LKGHGT++L+
Sbjct: 1   MRGLQLSLSKGQKLRLERALEKLESLSSKSNSDASVKVADDIAVNNEDAILKGHGTIELD 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           G +VA++CGVVERVNKL+YVR+LRARYKPE+GDI++GRV EVAPKRWRL+IN+ QDAVLM
Sbjct: 61  GRLVATLCGVVERVNKLVYVRSLRARYKPEIGDIIIGRVIEVAPKRWRLEINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDG LHLQARSQKYGKL+RG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGCLHLQARSQKYGKLKRG 180

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLLT+ PYL+K+RKQHFHHL+QYGIDLILGCNGF+W+GEHV+  V D M+ED  +K EQ+
Sbjct: 181 QLLTIPPYLVKKRKQHFHHLDQYGIDLILGCNGFVWVGEHVE--VRDEMVEDLPNKSEQE 240

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
                     +V+E YTPL+TR+NICR ANA+RV+STLGF++TVEV+ EIV+LS SLN+D
Sbjct: 241 --------NEEVEETYTPLDTRENICRAANAVRVMSTLGFMITVEVVTEIVSLSRSLNLD 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
            HEMLG+EF VL AEKE ERRS  K+R
Sbjct: 301 THEMLGAEFYVLVAEKEAERRSLLKRR 317

[Close]

BLAST of Cucsa.059050 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 427.2 bits (1097), Expect = 9.3e-120
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Cucsa.059050 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 647.9 bits (1670), Expect = 9.5e-183
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
           SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 327

[Close]

BLAST of Cucsa.059050 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 607.8 bits (1566), Expect = 1.1e-170
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of Cucsa.059050 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 607.8 bits (1566), Expect = 1.1e-170
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 254

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 255 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of Cucsa.059050 vs. NCBI nr
Match: gi|659128828|ref|XP_008464390.1| (PREDICTED: exosome complex component RRP4-like [Cucumis melo])

HSP 1 Score: 556.2 bits (1432), Expect = 3.8e-155
Identity = 282/328 (85.98%), Postives = 302/328 (92.07%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+ LNHTQ+ RL+ AQ+ L+SLSSK N DASV V DT+P +YEDGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVV +ICGVVERVNKLIYVR+LRARYKPE+GDIVVGRVTEVAPKRWRLDI+Y QDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIG+HVD    DTMIEDQV+K EQKG
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVD-STQDTMIEDQVNKIEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           SKFEG FGNQ+ E V+TPLETRQNICRTANAIRVLS LGFI+TVEVIME V+LSISLNI+
Sbjct: 241 SKFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNIN 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEF VL AEKEVERRS  KKRG
Sbjct: 301 VHEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]

BLAST of Cucsa.059050 vs. NCBI nr
Match: gi|703076477|ref|XP_010090344.1| (hypothetical protein L484_025009 [Morus notabilis])

HSP 1 Score: 509.6 bits (1311), Expect = 4.1e-141
Identity = 251/328 (76.52%), Postives = 294/328 (89.63%), Query Frame = 1


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+G QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VAD+IP+NYEDGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+YVRALRARYKPEVGDI+VGRV  VAPKRWR++INY QDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           +LT+ PYL+KRRKQHFHHLEQ+GIDLILGCNGFIW+GEHV+    D M+E+QV+K EQ+ 
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVE--ATDDMLEEQVNKTEQQI 244

Query: 241 SKFEGTFGN--QVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
           +K +    +  + ++   PLETRQ++CRTANA+RVLSTLGFI+T+EVI+E VNLS SLN+
Sbjct: 245 TKSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNL 304

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKR 327
           DVHEMLGSEFCVL AEKE ERR+ +KK+
Sbjct: 305 DVHEMLGSEFCVLVAEKEAERRTLNKKK 330

The following BLAST results are available for this feature:

BLAST of Cucsa.059050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP4_ARATH	1.7e-118	64.83	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1	[more]
EXOS2_MOUSE	3.8e-46	50.70	Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1	[more]
EXOS2_BOVIN	3.2e-45	50.73	Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1	[more]
EXOS2_HUMAN	5.4e-45	51.22	Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2	[more]
RRP4_SCHPO	9.3e-45	41.09	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Cucsa.059050 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QKH6_9ROSA	2.8e-141	76.52	Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1	[more]
A0A059AYJ7_EUCGR	2.2e-138	73.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1	[more]
F6HQ49_VITVI	7.2e-137	74.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=...	[more]
M5W486_PRUPE	5.2e-135	75.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1	[more]
A0A022S5G6_ERYGU	5.7e-134	73.70	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010258mg PE=4 SV=1	[more]

BLAST of Cucsa.059050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03360.1	9.3e-120	64.83	ribosomal RNA processing 4	[more]

BLAST of Cucsa.059050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730897\|ref\|XP_011659879.1\|	9.5e-183	100.00	PREDICTED: exosome complex component RRP4-like [Cucumis sativus]	[more]
gi\|659082845\|ref\|XP_008442061.1\|	1.1e-170	95.72	PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo]	[more]
gi\|659082839\|ref\|XP_008442058.1\|	1.1e-170	95.72	PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo]	[more]
gi\|659128828\|ref\|XP_008464390.1\|	3.8e-155	85.98	PREDICTED: exosome complex component RRP4-like [Cucumis melo]	[more]
gi\|703076477\|ref\|XP_010090344.1\|	4.1e-141	76.52	hypothetical protein L484_025009 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom
IPR026699	Exosome_RNA_bind1/RRP40/RRP4
IPR004088	KH_dom_type_1
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom
IPR026699	Exosome_RNA_bind1/RRP40/RRP4
IPR004088	KH_dom_type_1
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom
IPR026699	Exosome_RNA_bind1/RRP40/RRP4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003723	RNA binding
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)
GO:0000178	exosome (RNase complex)
GO:0000178	exosome (RNase complex)

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009561	megagametogenesis
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.059050.1	Cucsa.059050.1	mRNA
Cucsa.059050.2	Cucsa.059050.2	mRNA
Cucsa.059050.3	Cucsa.059050.3	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..220 score: 1.3
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..322 score: 1.04
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 85..176 score: 1.58
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 score: 6.
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 10..325 score: 2.0E
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 10..325 score: 2.0E
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 44..82 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.059050	Cla012174	Watermelon (97103) v1	cgywmB046
Cucsa.059050	ClCG04G004880	Watermelon (Charleston Gray)	cgywcgB048
Cucsa.059050	CSPI04G21420	Wild cucumber (PI 183967)	cgycpiB043
Cucsa.059050	Lsi01G017200	Bottle gourd (USVL1VR-Ls)	cgylsiB046
Cucsa.059050	CsaV3_4G031760	Cucumber (Chinese Long) v3	cgycucB045
Cucsa.059050	Cla97C04G071450	Watermelon (97103) v2	cgywmbB047

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.059050	Cucurbita maxima (Rimu)	cgycmaB0079
Cucsa.059050	Cucurbita moschata (Rifu)	cgycmoB0074
Cucsa.059050	Cucumber (Chinese Long) v2	cgycuB042