CsaV3_4G031760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031760
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionexosome complex component RRP4 homolog
Locationchr4 : 22318570 .. 22322707 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGAGAGACTATTAGCGGTGAGATGATTGTCCAAATTCTTGTGAAGTATCCATTAGTGTCAAGCTCCCAGGCCCATATGTCATTTTAGAAGGTTTTTGTTTTCCTGAAAGTCTATTTGAAGGTTTCAGTATGATCGTCTAGTTTAGAAAGCTTATTTGACTGTAGGATTTTAGTTTTAAGAGCTTATTTGATCGGAAGATTTTGATTTTGAAAGCACTGTGTAGCAAAATTTCAACTGAAAGATTTGCAAACATTCGTTTTTTTTTTTTCGTTTAAGAATGTTTGGAAAGGGGACAAATTTTGGACGCTTGATATGGGGCTTGGTTATTAAGTATTTTTGTACTTATTTTTGCTTTTTCAAAATATTTTTAGATGAAGGATCCGGTAATAGTTTTGAAAATAGAAAAGTTTAACATTTTGGCCAAAGGCATCCTAGAAATTGTTTGTTATAAGTTTCTTCATCTGATTTGTATAAGTTGTAAATGTTTATAATTGATATGCTTCACATTGCGATTTTAGCCGCCATATATATTGGAAAATACTAGTTGTTACTCATTATTTGTTTGTTTGTTTTTTTATCACGTGTAATATCTTTGCAAATATTTTGTGATTGTATGTCATATATTGGTCATAAGAATCATGCAACACCACCATGTTCTAACCTAGAAAATTTCCAAATGCAGATATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTACATAATTCTTCATTACTTTTTTTATAATAGATGCTTGGATTGTGTACTCGTCAGTGGATTATATGCATTGTGCTATAATTGAAAATTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGGTTGTCCATGAACTTTGTAATTTGGTTTTTCTTGGCCCTTTTTTGGTCTATTGTTATGATATCTTTTATGATCTAATTGTCTGTACTGGTTATTAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTAAAACCAAACACTTGCTATTTATCTTTTTGGTTTTACATAAAGGTAACATAGAGATATTGGTGAGTAAAACAGACAAGAAAAACTTATTCTGGTGTCATGGTTACAACACTTCAAATAGGAAAAACATGTTACAATGCCCCTCCAGCACTCCATTTTTTTCATACCATCTGATGTGATCTTATTCAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTGGAGTATTCTCTTTTGTTATGAATATAATGGTGCTTACTGTTGCACCAGACTGTGAATTAGCTATGCTTTCTGAAATTTTTTTACTGCAACTGATTCTCTCTGTCTCTCTTAAGAATGGTTGTGTTTGTTGTAACGCCGGGTTAATTGTATTATTTTATTTCTAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGTAAGTTTGATAGCCTTTACGTTCTTCTCTCATCAACGTATCTTCTACCAAATTTGTCACGTGTCATTCGTATAAGGTTTTCTCCTAGATTTTTACATTTTTAAGAATTAAACTTTCGCTTTTTTTTTCTTTTGGGGGGGGGGGGGGGGGGGGGGGGAATGTTAATTCTTAGCTAGCCGAATTTATGGTAGGCTATAAATATTTGTGGCTGGCCAGGCATCAATTTATAAACACTACTATGTTTATGCTTAATTTTTCATTTAAGGAACAATAACAATACCACATTCTTTCTCAGGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGGTAAAAATGAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAAACAAAATAAGTTTAAAATCAAATTTTGTACGTCTCCCATCTCTTCATTGGTTTCTTAGGGGAGACCCCACAGAAAGATTCTTGCTACCATGTGAATACTGATTTATAGTCGAATAGACAAATGTTATGGGGAATTCTAGCTGTTAAAACAGATTGTGGAGATGATTATAAAGTTGGTGCACACGAATGAGGGAGGAAGCCTTGAAGGGATGCCACCAAGATGAAAAGAGGGATAGGAGGAGATAGCGATGGGTGGACAGAAAGAAATACGAAAGATGGTCGCAGAAAAGTGATTTTGGAGAATGGAAAAAAGGAAAAAAAATATTTTCTAACACGTGAATGGTTATACTAGAAATTATGTCTAATTGTTACAACCATGTTTTTTTTTTTTCTGAAAAGTTAGCTGAATTCTAAGTCAAATTTAAAAAACAAAAACAACTTTTTCTAGTTTTCAAAACATAGACTTGGTTTTCTATAACATTAGTAGGAAGTACATAATAACGTAAGAAATTTAAAGATGGAATCTGTGTTTATAGGATTTCAAAAACTAAAAACAAAAAAACATATGGTTACCAATCTATTATAAGTTCAAAATTTTGGAGGATAGCTGTATTTGAATATGATATCTTTCAATGCAATTGTTATTAAATTCCTAAAAGCTTTTATGGCATCATCTCATATTGTTTCTTCATGACTGTTATGATTAAAATTTGTGCATATTTATATCCAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTGTATTTTGTTGAATTTTAGATTACCACCAGTTGTCGTATCAGTATAGAATACAATATGTCCTCAATTATTATGCTGTACGTGGTTTCATAAATGTCTAAGAATTACTTTTAGGATTTTACTATATGTCACATTTTTGGCTAGATTAATACTAG

mRNA sequence

ATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAA

Coding sequence (CDS)

ATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAA

Protein sequence

MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKGSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG
Homology
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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_011659879.1 (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 645.2 bits (1663), Expect = 1.2e-181
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
           SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 327

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_008442058.1 (PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_008442060.1 PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 605.1 bits (1559), Expect = 1.4e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 254

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 255 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_008442061.1 (PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442062.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442063.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442064.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 605.1 bits (1559), Expect = 1.4e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 580.9 bits (1496), Expect = 2.8e-162
Identity = 294/328 (89.63%), Postives = 310/328 (94.51%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP   D M+ED ++K EQKG
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP-TEDMMVEDPINKSEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           SKFEG FGNQVQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+L ISLNID
Sbjct: 241 SKFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 327

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 579.7 bits (1493), Expect = 6.2e-162
Identity = 294/328 (89.63%), Postives = 311/328 (94.82%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP   D M+ED ++K EQKG
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP-TEDMMVEDPINKSEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           SKFEG+FGNQVQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+LSISLNID
Sbjct: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 327

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BLAST of CsaV3_4G031760 vs. TAIR10
Match: AT1G03360.1 (ribosomal RNA processing 4)

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-118
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

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BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match: sp|Q9ZVT7|RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-117
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match: sp|Q8VBV3|EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-46
Identity = 108/213 (50.70%), Postives = 141/213 (66.20%), Query Frame = 0 

Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL +A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]
BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match: sp|Q2KID0|EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 0 

Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIW+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWV 205

[Close]
BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match: sp|Q13868|EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-45
Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = 0 

Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     +      VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]
BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match: sp|Q09704|RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-45
Identity = 106/258 (41.09%), Postives = 157/258 (60.85%), Query Frame = 0 

Query: 51  LKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + AS+ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMI 230
           S KYGKL  G  L V P L+ R K H + L   G+D+IL  NG++W+ +H + +      
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSV-- 250

Query: 231 EDQVDKPEQKGSKFEGTFGNQVQEV--YTPLE-TRQNICRTANAIRVL-----STLGFIM 290
              + + E++ S  E  + N+  E+  YT L  +R +IC    A R L     S   F  
Sbjct: 251 --SITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYE 310

Query: 291 TVEVIMEIVNLSISLNID 300
           +  V   + +L++  N+D
Sbjct: 311 SSLVFSNLQDLTVPKNMD 321

[Close]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match: tr|A0A1S3B5H2|A0A1S3B5H2_CUCME (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 9.1e-170
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 254

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 255 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match: tr|A0A1S3B4T9|A0A1S3B4T9_CUCME (exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 9.1e-170
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match: tr|A0A1S3CLC6|A0A1S3CLC6_CUCME (exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 3.1e-154
Identity = 282/328 (85.98%), Postives = 302/328 (92.07%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+ LNHTQ+ RL+ AQ+ L+SLSSK N DASV V DT+P +YEDGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVV +ICGVVERVNKLIYVR+LRARYKPE+GDIVVGRVTEVAPKRWRLDI+Y QDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIG+HVD    DTMIEDQV+K EQKG
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVD-STQDTMIEDQVNKIEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           SKFEG FGNQ+ E V+TPLETRQNICRTANAIRVLS LGFI+TVEVIME V+LSISLNI+
Sbjct: 241 SKFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNIN 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEF VL AEKEVERRS  KKRG
Sbjct: 301 VHEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match: tr|A0A2N9GW15|A0A2N9GW15_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 8.0e-142
Identity = 257/329 (78.12%), Postives = 294/329 (89.36%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ +QLSLN TQKIRL RA E+L+SLSSK NS+ASV +AD+IP+N+EDGVLKGHGTLDLN
Sbjct: 1   MREIQLSLNQTQKIRLNRALEKLESLSSKVNSNASVAIADSIPVNHEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+Y+RALRARYKPEVGDI+VGRV+EVA KRWRLDI+Y QDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRALRARYKPEVGDIIVGRVSEVAQKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG Q+DGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQYDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTV PYL+KRRKQHFHH+EQYG+DLILGCNGFIW+GEHV+ K  D M+EDQV KPEQ+ 
Sbjct: 181 LLTVPPYLVKRRKQHFHHVEQYGVDLILGCNGFIWVGEHVEAK--DDMVEDQVSKPEQQN 240

Query: 241 SKF-EGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
            K  + +   + QE  YTP+ETRQNICR ANA+RVLS LGF +T+EVI+E +NLS SLN+
Sbjct: 241 IKSNKNSVSLEEQERTYTPIETRQNICRIANAVRVLSILGFNITIEVILETMNLSSSLNL 300

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           D+HEMLGSEFCVL AE E ERRS +KK+G
Sbjct: 301 DIHEMLGSEFCVLVAEGEAERRSLTKKKG 327

[Close]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match: tr|A0A2N9G526|A0A2N9G526_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25658 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 8.9e-141
Identity = 256/330 (77.58%), Postives = 292/330 (88.48%), Query Frame = 0 

Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ +QLSLN TQKIRL RA E+L+SLSSK NS+ASV +AD+IP+N+EDGVLKGHGTLDLN
Sbjct: 1   MREIQLSLNQTQKIRLNRALEKLESLSSKVNSNASVAIADSIPVNHEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA++CGVVERVNKL+Y+RALRARYKPEVGDI+VGRV+EVA KRWRLDI+Y QDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRALRARYKPEVGDIIVGRVSEVAQKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG Q+DGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQYDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQ-- 240
           LLTV PYL+KRRKQHFHH+EQYG+DLILGCNGFIW+GEHV+ K  D M+EDQV K EQ  
Sbjct: 181 LLTVPPYLVKRRKQHFHHVEQYGVDLILGCNGFIWVGEHVEAK--DDMVEDQVSKSEQLN 240

Query: 241 -KGSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLN 300
            K +K   +   Q +  YTP+ETRQNICR ANA+RVLS LGF +T+EVI+E +NLS SLN
Sbjct: 241 IKSNKNSVSLEEQ-ERTYTPIETRQNICRIANAVRVLSILGFNITIEVILETMNLSSSLN 300

Query: 301 IDVHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           +D+HEMLGSEFCVL AE E ERRS +KK+G
Sbjct: 301 LDIHEMLGSEFCVLVAEGEAERRSLTKKKG 327

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659879.11.2e-181100.00PREDICTED: exosome complex component RRP4-like [Cucumis sativus][more]
XP_008442058.11.4e-16995.72PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_... [more]
XP_008442061.11.4e-16995.72PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_... [more]
XP_023533481.12.8e-16289.63exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
XP_022995373.16.2e-16289.63exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom... [more]
BLAST of CsaV3_4G031760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03360.11.0e-11864.83ribosomal RNA processing 4[more]
BLAST of CsaV3_4G031760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZVT7|RRP4_ARATH1.9e-11764.83Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
sp|Q8VBV3|EXOS2_MOUSE1.0e-4650.70Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
sp|Q2KID0|EXOS2_BOVIN1.1e-4550.73Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
sp|Q13868|EXOS2_HUMAN1.9e-4551.22Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
sp|Q09704|RRP4_SCHPO9.4e-4541.09Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of CsaV3_4G031760 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5H2|A0A1S3B5H2_CUCME9.1e-17095.72exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3B4T9|A0A1S3B4T9_CUCME9.1e-17095.72exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3CLC6|A0A1S3CLC6_CUCME3.1e-15485.98exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 P... [more]
tr|A0A2N9GW15|A0A2N9GW15_FAGSY8.0e-14278.12Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1[more]
tr|A0A2N9G526|A0A2N9G526_FAGSY8.9e-14177.58Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25658 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR036612KH_dom_type_1_sf
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR004088KH_dom_type_1
IPR022967S1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009561 megagametogenesis
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031760.1CsaV3_4G031760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 87..177
e-value: 7.5E-21
score: 76.0
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 27..86
e-value: 8.2E-17
score: 62.5
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 29..323
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 86..176
e-value: 4.1821E-33
score: 118.036
NoneNo IPR availableSUPERFAMILYSSF110324Ribosomal L27 protein-likecoord: 44..82
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 90..169
e-value: 6.6E-5
score: 32.3
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 179..220
e-value: 1.4E-13
score: 50.8
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 29..323
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 179..322
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 85..176

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G031760CSPI04G21420Wild cucumber (PI 183967)cpicucB212
CsaV3_4G031760Cucsa.059050Cucumber (Gy14) v1cgycucB045
CsaV3_4G031760CsGy4G019980Cucumber (Gy14) v2cgybcucB171
CsaV3_4G031760Cla012174Watermelon (97103) v1cucwmB359
CsaV3_4G031760ClCG04G004880Watermelon (Charleston Gray)cucwcgB317
CsaV3_4G031760Lsi01G017200Bottle gourd (USVL1VR-Ls)cuclsiB285
CsaV3_4G031760MELO3C008880.2Melon (DHL92) v3.6.1cucmedB333
CsaV3_4G031760Cla97C04G071450Watermelon (97103) v2cucwmbB312
CsaV3_4G031760Bhi03G001921Wax gourdcucwgoB404
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G031760Cucurbita pepo (Zucchini)cpecucB0973
CsaV3_4G031760Watermelon (Charleston Gray)cucwcgB323