Cucsa.057920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.057920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	small nuclear ribonucleoprotein F
Location	scaffold00614 : 235702 .. 237754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTAGAATAAAGAAAAGAAAGAAAAAAACCCTAAACCTCTCTCCCTTTCCCTCCCTTGTGTCTTCGACTGTGCATTAGCCGCAGCCCTCTGATCGTTTCAGTGCAGTCGCCGACCAATCCCTTCCCCATCCTTTTCTTCTTCCTCTGCCGAGTTTCGGCGGTCAACCCACGGCGACCAGGAGTCTTCCCTTGTAACATTTTCGGAACCATGGTAAGCAACAATTTTCGATCTGGAACAATGGTTATTGTTAATGTACCCTTATGTCGTATTAGATTATTGGATGGATTTTTCTGTTGATTTCACGGAGTTTTGGTTGTTTGAGTTCTCCAACCCCTCCATTTTTCCTTGATTCGTAAATGACGTTTAATTTTTAAGATGGTTGTTTTGACAATGTAGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGTTTGCTTCTATCTGCCGTTTGTTTTCCTCATTTCTCTTGACTGCTAGAGTTTGTACTGACTTTCCTCTACATTTCAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGGTGTGTTTTCTACTTCAGTTGAAACTAATGTAGATATTTTTCTTGGGTCTTTCTCTGCTTCAGGACTTAGTTTATAGCTAAGCCATCCGTGAACTATTTTTGAGTCTAATGAAATTGTGTACTACGAGAAGGAAATTTACTGTAATTGTCTTTTTTCTTGAGAGATTGTGCAAATGTAGGGTTGATGGATACTATGTTCTTCATCTCTGATTCTAATTTGATGTGTTCTGCTTGTATTAAGAGTTTTCTCTTACAACTATTTATCATTTTCTAATTTCACAGTGCTATGAAATAATCTGATTTGTAAGTTCATTTGTTCTAAAATTTAGATCATTAATGATTACAAATTAGAATATGTGAAGTAAAATCAACCATTTTGCTGAATTTTTTGTTTTGATAATTAGAAAATTTATTTGAAATTGGTTTTCAAATAAGTCCGTAGTCTCTTTCAGTGGCTGATTTCTACAACTCTTTAAATGTAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTAGCCTTCTCATTGATTGAAATGACAGTATCCAATGCCTCAATTCTTATTTTCACGTAGTAATATGATAGGAATGCTATTAGTAACATCATTACACTGCCAAGTGTATATTATACTTTCCCAAGTAAAAGAAAAGTGAAAAGCGGAGAATTATTTAGTAGTCAAGGCTTGAGTGAGCATATTCAAGAGAGGGAAAGTTTCAAATACCTCAAATACTTAATTATCTTGTAGTTTTATATTTGAGCATATTTGCAAGGTTGTGCTTTTGGTCTTTGTCTGGTGCATATGGTGGACTTGGCCATACTCATGGAAGAATTCTtCCCTGATATCTGACATCAAACATGAAAaTTTTCCTGTTTTTTCCTGGTAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAGCATGTAAATCTTAGCAGCTTTTCATTGTCGCAGTAACAGTGAAGTATGTAGCTTTTCAGTCTTCTAGTTTTTCTTTCTTCTGTTGTGCTTAATCTGTATCTTGTTGTTATTGATACTCTATTTATGCTGTCTCAAAGGTCAGGAACTTTCTTCTTTGGTTGATTTCAAACCTGCAACAATGGTAGATTAAGTATTCTTGACTCTCAAAGTAACATCTATGTTTCCGGGTAGCTTGAATTGCTTTAGTTTTCTATACAAGAAATAGTTGAGCTTTTATAGTTTGTTCATGTGGAATGCAACGGGTTGGAATATATTTGTGACCTTGTACTGCTTAGATTGGCCAAGTTTCAAAATTTACATGTCACCTTCATCTAaTAGCATGAGCAATGTATTATCTACTTTTGTTtTTCCCATATGTGCCATAGATATACGTTGTGATACTCTTGTAGATGCAAATGGCA

mRNA sequence

AGAAATTAGAATAAAGAAAAGAAAGAAAAAAACCCTAAACCTCTCTCCCTTTCCCTCCCTTGTGTCTTCGACTGTGCATTAGCCGCAGCCCTCTGATCGTTTCAGTGCAGTCGCCGACCAATCCCTTCCCCATCCTTTTCTTCTTCCTCTGCCGAGTTTCGGCGGTCAACCCACGGCGACCAGGAGTCTTCCCTTGTAACATTTTCGGAACCATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAGCATGTAAATCTTAGCAGCTTTTCATTGTCGCAGTAACAGTGAAGTCAGGAACTTTCTTCTTTGGTTGATTTCAAACCTGCAACAATGGTAGATTAAGTATTCTTGACTCTCAAAGTAACATCTATGTTTCCGGGTAGCTTGAATTGCTTTAGTTTTCTATACAAGAAATAGTTGAGCTTTTATAGTTTGTTCATGTGGAATGCAACGGGTTGGAATATATTTGTGACCTTGTACTGCTTAGATTGGCCAAGTTTCAAAATTTACATGTCACCTTCATCTAATAGCATGAGCAATGTATTATCTACTTTTGTTTTTCCCATATGTGCCATAGATATACGTTGTGATACTCTTGTAGATGCAAATGGCA

Coding sequence (CDS)

ATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAG

Protein sequence

MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD*

Homology

[Close]

BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-40
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]

BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Cucsa.057920 vs. TrEMBL
Match: W9SLN6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024441 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-40
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEE+IDGQFTG+LGE
Sbjct: 24  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEFIDGQFTGNLGE 83

Query: 62  ILIRCNNVLYLRGVPEDEEIEDAERD 88
           ILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 84  ILIRCNNVLYLRGVPEDEEIEDAERD 109

[Close]

BLAST of Cucsa.057920 vs. TrEMBL
Match: M5XGF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014017mg PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-40
Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEEIEDAE++
Sbjct: 63 ILIRCNNVLYLRGVPEDEEIEDAEQE 88

[Close]

BLAST of Cucsa.057920 vs. TrEMBL
Match: B9SXM7_RICCO (Small nuclear ribonucleoprotein f, putative OS=Ricinus communis GN=RCOM_0017870 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-39
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEE+IDGQFTG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEFIDGQFTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEE+EDA+RD
Sbjct: 63 ILIRCNNVLYLRGVPEDEELEDADRD 88

[Close]

BLAST of Cucsa.057920 vs. TrEMBL
Match: A0A059CKE6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00155 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-39
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGK V+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 3  TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDE++EDA +D
Sbjct: 63 ILIRCNNVLYLRGVPEDEDLEDANQD 88

[Close]

BLAST of Cucsa.057920 vs. TrEMBL
Match: A0A103YIG5_CYNCS (Like-Sm (LSM) domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_011940 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.4e-39
Identity = 78/86 (90.70%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          ++PVNPKPFLNNLTGK V+VKLKWGMEYKG+LVSVDSYMNLQLAN+EEYIDGQFTG+LGE
Sbjct: 3  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEEIE+AERD
Sbjct: 63 ILIRCNNVLYLRGVPEDEEIEEAERD 88

[Close]

BLAST of Cucsa.057920 vs. TAIR10
Match: AT4G30220.2 (AT4G30220.2 small nuclear ribonucleoprotein F)

HSP 1 Score: 164.9 bits (416), Expect = 2.3e-41
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 11 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 70

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 71 ILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]

BLAST of Cucsa.057920 vs. TAIR10
Match: AT2G14285.1 (AT2G14285.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 87 D 88
          D
Sbjct: 61 D 61

[Close]

BLAST of Cucsa.057920 vs. TAIR10
Match: AT2G43810.1 (AT2G43810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

[Close]

BLAST of Cucsa.057920 vs. TAIR10
Match: AT3G59810.1 (AT3G59810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-13
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ G+ VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 67 NNVLYLRGV 76
          NNVLY+  V
Sbjct: 75 NNVLYISTV 83

[Close]

BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|659127580|ref|XP_008463776.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 88
          EILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|703141767|ref|XP_010107585.1| (hypothetical protein L484_024441 [Morus notabilis])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEE+IDGQFTG+LGE
Sbjct: 24  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEFIDGQFTGNLGE 83

Query: 62  ILIRCNNVLYLRGVPEDEEIEDAERD 88
           ILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 84  ILIRCNNVLYLRGVPEDEEIEDAERD 109

[Close]

BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|1009105384|ref|XP_015883339.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Ziziphus jujuba])

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQF+G+LGE
Sbjct: 6  TIPVNPKPFLNNLTGKTVAVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFSGNLGE 65

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 66 ILIRCNNVLYLRGVPEDEEIEDAERD 91

[Close]

BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|596208261|ref|XP_007223820.1| (hypothetical protein PRUPE_ppa014017mg [Prunus persica])

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40
Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEEIEDAE++
Sbjct: 63 ILIRCNNVLYLRGVPEDEEIEDAEQE 88

[Close]

BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|470127843|ref|XP_004299869.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Fragaria vesca subsp. vesca])

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 88
          ILIRCNNVLYLRGVPEDEEIEDAE+D
Sbjct: 63 ILIRCNNVLYLRGVPEDEEIEDAEQD 88

The following BLAST results are available for this feature:

BLAST of Cucsa.057920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUXF_ARATH	4.1e-40	88.37	Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 ...	[more]
RUXF_MOUSE	6.4e-33	80.00	Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1	[more]
RUXF_HUMAN	6.4e-33	80.00	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	[more]
RUXF_XENLA	6.4e-33	80.00	Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1	[more]
RUXF_BOVIN	6.4e-33	80.00	Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2	[more]

BLAST of Cucsa.057920 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SLN6_9ROSA	1.3e-40	95.35	Uncharacterized protein OS=Morus notabilis GN=L484_024441 PE=4 SV=1	[more]
M5XGF4_PRUPE	3.7e-40	94.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014017mg PE=3 SV=1	[more]
B9SXM7_RICCO	4.1e-39	90.70	Small nuclear ribonucleoprotein f, putative OS=Ricinus communis GN=RCOM_0017870 ...	[more]
A0A059CKE6_EUCGR	4.1e-39	91.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00155 PE=3 SV=1	[more]
A0A103YIG5_CYNCS	5.4e-39	90.70	Like-Sm (LSM) domain-containing protein OS=Cynara cardunculus var. scolymus GN=C...	[more]

BLAST of Cucsa.057920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30220.2	2.3e-41	88.37	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	2.7e-26	86.89	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.1	1.6e-13	46.97	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	4.6e-13	46.38	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Cucsa.057920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127580\|ref\|XP_008463776.1\|	2.6e-42	100.00	PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo]	[more]
gi\|703141767\|ref\|XP_010107585.1\|	1.8e-40	95.35	hypothetical protein L484_024441 [Morus notabilis]	[more]
gi\|1009105384\|ref\|XP_015883339.1\|	4.1e-40	95.35	PREDICTED: probable small nuclear ribonucleoprotein F [Ziziphus jujuba]	[more]
gi\|596208261\|ref\|XP_007223820.1\|	5.4e-40	94.19	hypothetical protein PRUPE_ppa014017mg [Prunus persica]	[more]
gi\|470127843\|ref\|XP_004299869.1\|	5.4e-40	95.35	PREDICTED: probable small nuclear ribonucleoprotein F [Fragaria vesca subsp. ves...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR016487	Lsm6/sSmF
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR016487	Lsm6/sSmF
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR016487	Lsm6/sSmF

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome
GO:0000398	mRNA splicing, via spliceosome
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005732	small nucleolar ribonucleoprotein complex
GO:0005732	small nucleolar ribonucleoprotein complex
GO:0005732	small nucleolar ribonucleoprotein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.057920.1	Cucsa.057920.1	mRNA
Cucsa.057920.2	Cucsa.057920.2	mRNA
Cucsa.057920.3	Cucsa.057920.3	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..72 score: 3.9
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..74 score: 6.2
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 7..76 score: 2.62
IPR016487	Sm-like protein Lsm6/SmF	PIR	PIRSF006609	snRNP_SmF	coord: 1..83 score: 1.6
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 10..76 score: 1.0
None	No IPR available	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 1..87 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.057920	Cla023308	Watermelon (97103) v1	cgywmB047
Cucsa.057920	Csa4G623900	Cucumber (Chinese Long) v2	cgycuB042
Cucsa.057920	ClCG11G017220	Watermelon (Charleston Gray)	cgywcgB047
Cucsa.057920	CSPI04G22540	Wild cucumber (PI 183967)	cgycpiB043
Cucsa.057920	MELO3C025666.2	Melon (DHL92) v3.6.1	cgymedB042
Cucsa.057920	CsaV3_4G032850	Cucumber (Chinese Long) v3	cgycucB045
Cucsa.057920	Cla97C11G223280	Watermelon (97103) v2	cgywmbB046
Cucsa.057920	Bhi09G002905	Wax gourd	cgywgoB048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.057920	Silver-seed gourd	carcgyB0363
Cucsa.057920	Silver-seed gourd	carcgyB0705
Cucsa.057920	Cucurbita maxima (Rimu)	cgycmaB0076
Cucsa.057920	Cucurbita maxima (Rimu)	cgycmaB0078
Cucsa.057920	Cucurbita moschata (Rifu)	cgycmoB0071
Cucsa.057920	Cucurbita moschata (Rifu)	cgycmoB0073
Cucsa.057920	Cucumber (Chinese Long) v2	cgycuB043
Cucsa.057920	Melon (DHL92) v3.5.1	cgymeB042
Cucsa.057920	Cucurbita pepo (Zucchini)	cgycpeB0073
Cucsa.057920	Cucurbita pepo (Zucchini)	cgycpeB0074
Cucsa.057920	Bottle gourd (USVL1VR-Ls)	cgylsiB047