Cucsa.052680 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.052680
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptiontRNA-splicing endonuclease subunit Sen2-2, putative
Locationscaffold00577 : 157963 .. 159255 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCTATAATACTAAATCTAGGGAAACTGTAAATAGTCCACACCATAAACATAGATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACTCTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGTTTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATTTCCAATACTGTACTTCACCTTCAATCTTCTTTCATACACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGCAACAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGAAATAGACCAAGTAAGATATAATTTAGGGTCTTTTATCTGTTTTTTTTTTGTGTGTGTGGATAATTTCTGATTGTTCTTCATGTACATCGAAAAACAACTATCTAGGGCTATACAACAGATCTAGTTTTTGATGGGTTTTGAAGATTATATAGTGAGGGATTGTTCCAATTACTTCGAACTTGAGAACTTGAATGCTTAGGGGGTAAGGGGATAGCTCAAATACACATATCTTTCTGGAATAACGTTCTTCATTTGTCTCTGTGAACTTGTTTCATTAAATTTATTTTGATGATTTCAATCATTTCATTCTTTTTGTATGAGTTTCTTGAGAATGTTTGAAGAGGCTTAATGTTGTACCTAACACTAGTTAAGCCGAGGACTTTCCAGTATCG

mRNA sequence

TGTTCTATAATACTAAATCTAGGGAAACTGTAAATAGTCCACACCATAAACATAGATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACTCTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGTTTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATTTCCAATACTGTACTTCACCTTCAATCTTCTTTCATACACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGCAACAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGAAATAGACCAAGTAAGATATAATTTAGGGTCTTTTATCTGTTTTTTTTTTGTGTGTGTGGATAATTTCTGATTGTTCTTCATGTACATCGAAAAACAACTATCTAGGGCTATACAACAGATCTAGTTTTTGATGGGTTTTGAAGATTATATAGTGAGGGATTGTTCCAATTACTTCGAACTTGAGAACTTGAATGCTTAGGGGGTAAGGGGATAGCTCAAATACACATATCTTTCTGGAATAACGTTCTTCATTTGTCTCTGTGAACTTGTTTCATTAAATTTATTTTGATGATTTCAATCATTTCATTCTTTTTGTATGAGTTTCTTGAGAATGTTTGAAGAGGCTTAATGTTGTACCTAACACTAGTTAAGCCGAGGACTTTCCAGTATCG

Coding sequence (CDS)

ATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACTCTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGTTTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATTTCCAATACTGTACTTCACCTTCAATCTTCTTTCATACACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGCAACAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGA

Protein sequence

MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV*
Homology
[Close]
BLAST of Cucsa.052680 vs. Swiss-Prot
Match: SEN22_ARATH (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-66
Identity = 129/237 (54.43%), Postives = 163/237 (68.78%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           MAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162
           FGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C +N  + W YMK+++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWS 222
           F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV-----QSGDSDRLRVWS 180

Query: 223 DFLCTVRLCGSVAKTLLVLTVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN 278
           D  C VRL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]
BLAST of Cucsa.052680 vs. Swiss-Prot
Match: SEN21_ARATH (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.1e-65
Identity = 131/241 (54.36%), Postives = 162/241 (67.22%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFQELWRYMKTQKATFP 162
           FGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+  E N  +LWR M + K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 163 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVW 222
             Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV        GN RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 223 SDFLCTVRLCGSVAKTLLVLTVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPA 281
           SD  C+VRL GSVAK+LLVL VN   N      P CL+ Y++EE+T+ RWSPE  RE+  
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDET 236

[Close]
BLAST of Cucsa.052680 vs. Swiss-Prot
Match: SEN2_ORYSJ (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.3e-57
Identity = 121/241 (50.21%), Postives = 152/241 (63.07%), Query Frame = 1 

Query: 45  PRWK----GKASEAKALADPISNTVLHLQSSFIHSNAQGLLSG---SIILYLADEEQTDL 104
           PRWK    GK   + A A+P+S  V  L++SFI S    +LSG   S +L +  E Q  +
Sbjct: 6   PRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPE-QAVI 65

Query: 105 LNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQK 164
           LNR  FG  I  A   K WFQ   EE FYL + LNC+++    + + +  ELW Y ++  
Sbjct: 66  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 125

Query: 165 ATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATD-SNGNG 224
            +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHP+LVHSEFAV+V+ E  +  N  G
Sbjct: 126 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 185

Query: 225 RLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCR 277
           RL VWSD LC +R  GSVAKTLLVLT++ +      SP CL+   + ERT+TRW  +QCR
Sbjct: 186 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 245

[Close]
BLAST of Cucsa.052680 vs. Swiss-Prot
Match: SEN2_CHICK (tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-15
Identity = 50/162 (30.86%), Postives = 76/162 (46.91%), Query Frame = 1 

Query: 115 QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKN 174
           ++ Q  +EEAF+L Y L CL +  G++      +LW      K +F   Y+AY + R K 
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEE-PLTILKLWEIFSEVKPSFKTTYMAYHYFRSKG 350

Query: 175 WVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLR---VWSDFLCTVRLC 234
           WV + G +YG D + YR  P   H+ ++  V+ E  D N  G LR    W       R  
Sbjct: 351 WVPKVGLKYGTDLLLYRKGPPFYHASYS--VIAELVDDNFEGSLRRPLSWMSLSGLNRTT 410

Query: 235 GSVAKTLLVLTV----NDNGSGFVSPSCLDSYSIEERTVTRW 270
            + +K LL+  +    +       +P CL    ++E  VTRW
Sbjct: 411 VNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRW 449

[Close]
BLAST of Cucsa.052680 vs. TrEMBL
Match: A0A0A0KEN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290260 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 5.8e-159
Identity = 277/281 (98.58%), Postives = 278/281 (98.93%), Query Frame = 1 

Query: 1   MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60
           MVVVKTPTVVFFIQLTLPAAA FFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP
Sbjct: 1   MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60

Query: 61  ISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120
           ISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG
Sbjct: 61  ISNTLLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120

Query: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180
           MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG
Sbjct: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180

Query: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLV 240
           SQYGVDFVAYRHHPSLVHSEFAVLVLCE  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLV
Sbjct: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLV 240

Query: 241 LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
           LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Sbjct: 241 LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 281

[Close]
BLAST of Cucsa.052680 vs. TrEMBL
Match: A0A067K4C8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11452 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.7e-92
Identity = 166/235 (70.64%), Postives = 188/235 (80.00%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           M PRWKGK SEAKAL DP+S  V  L SS I   A GLLSG  +L   + EQT+LL R C
Sbjct: 1   MGPRWKGKGSEAKALVDPMSKIVSELCSSLIQIAAHGLLSGCSVLLAVEAEQTELLTRAC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162
           FGRPI+ AEK+KQWFQ G+EEAFYL + L CLKIV   +C+K+  ELW+YMK++KATFP+
Sbjct: 61  FGRPIIVAEKEKQWFQLGLEEAFYLCHSLTCLKIVGEDNCQKDIVELWQYMKSKKATFPD 120

Query: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWS 222
           FY AY HLR+KNWVVRPGSQYGVDFVAYRHHPSLVHSE+AVL+L E  D + NGRLRVWS
Sbjct: 121 FYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLILSE-EDGDANGRLRVWS 180

Query: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCREN 278
           DF CTVRLCGSVAK LLVL VN NG G +SPSCL+ YS+EE TVTRWSPEQ REN
Sbjct: 181 DFHCTVRLCGSVAKKLLVLNVNKNGHGAISPSCLERYSVEEHTVTRWSPEQSREN 234

[Close]
BLAST of Cucsa.052680 vs. TrEMBL
Match: F6GTX7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03380 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-90
Identity = 161/234 (68.80%), Postives = 190/234 (81.20%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           M PRWKGK +EAKALA+P+S  V  LQSS   S++QGLLSG  +L  A  EQT+LLNR+C
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162
           FGRP++TAEKDKQWFQ  MEEAFYL + L CLKIV   +  KN +ELW+YMK+++ TFP+
Sbjct: 61  FGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETFPD 120

Query: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWS 222
           FY+AY HLR+KNWVVR GSQYGVDFVAYRHHP+LVHSE+AVLVL E  + N NGRLRVWS
Sbjct: 121 FYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEENE-NANGRLRVWS 180

Query: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRE 277
           DF CT+RLCGSVAKTLLV+ +N NG G  +P CL  YS+EERT+TRWS EQCRE
Sbjct: 181 DFDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233

[Close]
BLAST of Cucsa.052680 vs. TrEMBL
Match: V4RTD4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029956mg PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 5.7e-90
Identity = 161/239 (67.36%), Postives = 185/239 (77.41%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           M PRWKG+ASEAKALADP+S  +  L SS + S A  +L+G   L   + EQT+LLNR C
Sbjct: 1   MGPRWKGRASEAKALADPMSKIISDLHSSLVQSEAHAVLAGYSALLAVEAEQTELLNRAC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162
           FGRPI+TAEKDKQW+Q GMEE FYL + L CLKIV   +  KN  ELW+YMK +K TFP 
Sbjct: 61  FGRPIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120

Query: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWS 222
            Y AY HLR KNWVVR GSQYGVDFVAYRHHPSLVHSE+AVLVL E  D   NGRLRVWS
Sbjct: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGE-NGRLRVWS 180

Query: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
           D  CTVRLCG VAKTLL+LT+N NG G  +PSCL+ Y++EERT++RWSPEQCRE+PA V
Sbjct: 181 DIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATV 238

[Close]
BLAST of Cucsa.052680 vs. TrEMBL
Match: A0A067LIP4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05586 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.3e-88
Identity = 160/235 (68.09%), Postives = 185/235 (78.72%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           M PRWKGK SEAKALADP+S  V  L SS I   + GLLSG  +L   + EQT+LL R C
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVSELCSSLIQMASHGLLSGCSVLLAVEAEQTELLTRAC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162
           FGRPI+ A+KD+QWFQ G+EEA YL + L CL IV   +C+K+  ELW+ MK++KATFP+
Sbjct: 61  FGRPIIVADKDQQWFQLGLEEAVYLCHSLKCLNIVGEDNCQKDVIELWQCMKSKKATFPD 120

Query: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWS 222
           FY AY HLR+KNWV RPGSQYGV FVAYRHHPSLVHSE+AVL+L E  D + NGRLRVWS
Sbjct: 121 FYKAYSHLRMKNWVGRPGSQYGVGFVAYRHHPSLVHSEYAVLILSE-EDGDANGRLRVWS 180

Query: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCREN 278
           DF CTVRLCGSVAKTLLVL+VN NG G +SPSCL+ Y +EE TVTRWSPEQ REN
Sbjct: 181 DFHCTVRLCGSVAKTLLVLSVNKNGHGAISPSCLERYLVEEHTVTRWSPEQSREN 234

[Close]
BLAST of Cucsa.052680 vs. TAIR10
Match: AT5G60230.2 (AT5G60230.2 splicing endonuclease 2)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-68
Identity = 130/238 (54.62%), Postives = 164/238 (68.91%), Query Frame = 1 

Query: 42  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRT 101
           SMAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R 
Sbjct: 5   SMAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRC 64

Query: 102 CFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFP 161
           CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C +N  + W YMK+++  FP
Sbjct: 65  CFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFP 124

Query: 162 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVW 221
            F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVW
Sbjct: 125 MFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV-----QSGDSDRLRVW 184

Query: 222 SDFLCTVRLCGSVAKTLLVLTVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN 278
           SD  C VRL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+
Sbjct: 185 SDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 237

[Close]
BLAST of Cucsa.052680 vs. TAIR10
Match: AT3G45590.1 (AT3G45590.1 splicing endonuclease 1)

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-66
Identity = 131/241 (54.36%), Postives = 162/241 (67.22%), Query Frame = 1 

Query: 43  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102
           MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFQELWRYMKTQKATFP 162
           FGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+  E N  +LWR M + K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 163 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVW 222
             Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV        GN RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 223 SDFLCTVRLCGSVAKTLLVLTVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPA 281
           SD  C+VRL GSVAK+LLVL VN   N      P CL+ Y++EE+T+ RWSPE  RE+  
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDET 236

[Close]
BLAST of Cucsa.052680 vs. TAIR10
Match: AT3G45577.1 (AT3G45577.1 tRNA-intron endonucleases)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-15
Identity = 51/133 (38.35%), Postives = 62/133 (46.62%), Query Frame = 1 

Query: 42  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRT 101
           SMAPRWK                            A G LS   +      EQ +LL+R 
Sbjct: 16  SMAPRWKW---------------------------ALGFLSSCNVFL---SEQAELLDRY 75

Query: 102 CFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFP 161
           CFGR +  AEKDK+W Q   EEAF+L Y L C+KI        N  +LWR +++ K  F 
Sbjct: 76  CFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGRSLVNGVDLWRSIRSFKPNFT 118

Query: 162 EFYIAYRHLRLKN 175
             Y AY HLR KN
Sbjct: 136 ILYKAYSHLRSKN 118

[Close]
BLAST of Cucsa.052680 vs. NCBI nr
Match: gi|449463691|ref|XP_004149565.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 568.2 bits (1463), Expect = 8.3e-159
Identity = 277/281 (98.58%), Postives = 278/281 (98.93%), Query Frame = 1 

Query: 1   MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60
           MVVVKTPTVVFFIQLTLPAAA FFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP
Sbjct: 1   MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60

Query: 61  ISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120
           ISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG
Sbjct: 61  ISNTLLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120

Query: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180
           MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG
Sbjct: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180

Query: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLV 240
           SQYGVDFVAYRHHPSLVHSEFAVLVLCE  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLV
Sbjct: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLV 240

Query: 241 LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
           LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Sbjct: 241 LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 281

[Close]
BLAST of Cucsa.052680 vs. NCBI nr
Match: gi|659127808|ref|XP_008463899.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo])

HSP 1 Score: 498.0 bits (1281), Expect = 1.0e-137
Identity = 244/271 (90.04%), Postives = 250/271 (92.25%), Query Frame = 1 

Query: 11  FFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQS 70
           F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQS
Sbjct: 8   FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQS 67

Query: 71  SFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYH 130
           SFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYH
Sbjct: 68  SFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYH 127

Query: 131 LNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 190
           LNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY
Sbjct: 128 LNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 187

Query: 191 RHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGF 250
           RHHP+LVHSEFAVLVL E  DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNGS F
Sbjct: 188 RHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSEF 247

Query: 251 VSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
           VSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Sbjct: 248 VSPSCLDSYSIEERTVTRWSPEQCRENPAEV 278

[Close]
BLAST of Cucsa.052680 vs. NCBI nr
Match: gi|778714285|ref|XP_011657214.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 1.9e-126
Identity = 235/281 (83.63%), Postives = 238/281 (84.70%), Query Frame = 1 

Query: 1   MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60
           MVVVKTPTVVFFIQLTLPAAA FFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP
Sbjct: 1   MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADP 60

Query: 61  ISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120
           ISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG
Sbjct: 61  ISNTLLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFG 120

Query: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180
           MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG
Sbjct: 121 MEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPG 180

Query: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLV 240
           SQYGVDFVAYRHHPSLVHSEFAVLVLCE  DSNGNGRLRV          C S+ +    
Sbjct: 181 SQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRV----------CYSIEER--- 240

Query: 241 LTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
                                   TVTRWSPEQCRENPAKV
Sbjct: 241 ------------------------TVTRWSPEQCRENPAKV 244

[Close]
BLAST of Cucsa.052680 vs. NCBI nr
Match: gi|659127811|ref|XP_008463900.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 7.3e-107
Identity = 205/271 (75.65%), Postives = 211/271 (77.86%), Query Frame = 1 

Query: 11  FFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQS 70
           F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQS
Sbjct: 8   FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQS 67

Query: 71  SFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYH 130
           SFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYH
Sbjct: 68  SFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYH 127

Query: 131 LNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 190
           LNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY
Sbjct: 128 LNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 187

Query: 191 RHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGF 250
           RHHP+LVHSEFAVLVL E  DSNGNGRLRV          C S+ +              
Sbjct: 188 RHHPALVHSEFAVLVLSEGRDSNGNGRLRV----------CYSIEER------------- 241

Query: 251 VSPSCLDSYSIEERTVTRWSPEQCRENPAKV 282
                         TVTRWSPEQCRENPA+V
Sbjct: 248 --------------TVTRWSPEQCRENPAEV 241

[Close]
BLAST of Cucsa.052680 vs. NCBI nr
Match: gi|802651732|ref|XP_012080033.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Jatropha curcas])

HSP 1 Score: 351.7 bits (901), Expect = 1.2e-93
Identity = 173/259 (66.80%), Postives = 197/259 (76.06%), Query Frame = 1 

Query: 19  AAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQ 78
           A  L+FFL+ G     F       M PRWKGK SEAKAL DP+S  V  L SS I   A 
Sbjct: 26  ALTLYFFLVYGC----FVSLKDNKMGPRWKGKGSEAKALVDPMSKIVSELCSSLIQIAAH 85

Query: 79  GLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVD 138
           GLLSG  +L   + EQT+LL R CFGRPI+ AEK+KQWFQ G+EEAFYL + L CLKIV 
Sbjct: 86  GLLSGCSVLLAVEAEQTELLTRACFGRPIIVAEKEKQWFQLGLEEAFYLCHSLTCLKIVG 145

Query: 139 GQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVH 198
             +C+K+  ELW+YMK++KATFP+FY AY HLR+KNWVVRPGSQYGVDFVAYRHHPSLVH
Sbjct: 146 EDNCQKDIVELWQYMKSKKATFPDFYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVH 205

Query: 199 SEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDS 258
           SE+AVL+L E  D + NGRLRVWSDF CTVRLCGSVAK LLVL VN NG G +SPSCL+ 
Sbjct: 206 SEYAVLILSE-EDGDANGRLRVWSDFHCTVRLCGSVAKKLLVLNVNKNGHGAISPSCLER 265

Query: 259 YSIEERTVTRWSPEQCREN 278
           YS+EE TVTRWSPEQ REN
Sbjct: 266 YSVEEHTVTRWSPEQSREN 279

The following BLAST results are available for this feature:
BLAST of Cucsa.052680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEN22_ARATH2.2e-6654.43tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 S... [more]
SEN21_ARATH4.1e-6554.36tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 S... [more]
SEN2_ORYSJ5.3e-5750.21Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica... [more]
SEN2_CHICK1.7e-1530.86tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2 PE=2 SV=1[more]
BLAST of Cucsa.052680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEN4_CUCSA5.8e-15998.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290260 PE=4 SV=1[more]
A0A067K4C8_JATCU2.7e-9270.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11452 PE=4 SV=1[more]
F6GTX7_VITVI2.5e-9068.80Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03380 PE=4 SV=... [more]
V4RTD4_9ROSI5.7e-9067.36Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029956mg PE=4 SV=1[more]
A0A067LIP4_JATCU5.3e-8868.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05586 PE=4 SV=1[more]
BLAST of Cucsa.052680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60230.24.2e-6854.62 splicing endonuclease 2[more]
AT3G45590.12.3e-6654.36 splicing endonuclease 1[more]
AT3G45577.13.1e-1538.35 tRNA-intron endonucleases[more]
BLAST of Cucsa.052680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463691|ref|XP_004149565.1|8.3e-15998.58PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis sativus... [more]
gi|659127808|ref|XP_008463899.1|1.0e-13790.04PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo][more]
gi|778714285|ref|XP_011657214.1|1.9e-12683.63PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis sativus... [more]
gi|659127811|ref|XP_008463900.1|7.3e-10775.65PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis melo][more]
gi|802651732|ref|XP_012080033.1|1.2e-9366.80PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Jatropha c... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006676tRNA_splic
IPR006677tRNA_intron_Endonuc_cat-like
IPR006678tRNA_intron_Endonuc_N
IPR011856tRNA_endonuc-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
GO:0003676nucleic acid binding
GO:0004518nuclease activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000213 tRNA-intron endonuclease activity
molecular_function GO:0004518 nuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.052680.1Cucsa.052680.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 43..276
score: 2.6
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 163..247
score: 2.5
IPR006677tRNA intron endonuclease, catalytic domain-likeunknownSSF53032tRNA-intron endonuclease catalytic domain-likecoord: 160..248
score: 2.27
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 78..150
score: 2.9
IPR011856tRNA endonuclease-like domainGENE3DG3DSA:3.40.1350.10coord: 160..247
score: 4.5