Carg20242 (gene) Silver-seed gourd

Overview
NameCarg20242
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptiontRNA-splicing endonuclease subunit Sen2
LocationCucurbita_argyrosperma_scaffold_131 : 64890 .. 65612 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

mRNA sequence

ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

Coding sequence (CDS)

ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

Protein sequence

MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Homology
[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_022947593.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 1.2e-133
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_023532286.1 (tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.0 bits (1247), Expect = 1.5e-133
Identity = 236/239 (98.74%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWHYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_022947592.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 483.8 bits (1244), Expect = 3.4e-133
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_023007400.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 471.5 bits (1212), Expect = 1.7e-129
Identity = 229/240 (95.42%), Postives = 231/240 (96.25%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIV QLQSSL QSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVCQLQSSLIQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDCE NF+ELW YMKSQ ATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLCYHLNCLKIVDGQDCETNFEELWHYMKSQNATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVT WSPEQCRENPATK+
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTGWSPEQCRENPATKI 240

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_023007399.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 470.3 bits (1209), Expect = 3.9e-129
Identity = 229/239 (95.82%), Postives = 230/239 (96.23%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIV QLQSSL QSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVCQLQSSLIQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDCE NF+ELW YMKSQ ATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLCYHLNCLKIVDGQDCETNFEELWHYMKSQNATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVT WSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTGWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. TAIR10
Match: AT5G60230.2 (splicing endonuclease 2)

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-72
Identity = 135/240 (56.25%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +LQ SL ++++ G LSSC+VL   + EQAELL+R C
Sbjct: 6   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 65

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR ++SAEK K+W Q   EEAF+L Y+L C+KI     C +N  + WLYMKS++  FP 
Sbjct: 66  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 125

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           F+KAY +LR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWS
Sbjct: 126 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS-----GDSDRLRVWS 185

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSN--GNRSVSPSCLDSYSIEERTVTRWSPEQCRENPAT 239
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+ +T
Sbjct: 186 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 240

[Close]
BLAST of Carg20242 vs. TAIR10
Match: AT3G45590.1 (splicing endonuclease 1)

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-71
Identity = 137/238 (57.56%), Postives = 170/238 (71.43%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +L+SSLTQ++A G LSSC+VL   + E+AELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFDELWLYMKSQKATFP 120
           FGR +V AEKDK+W Q   EEAF+L Y L C+KI + G+  E   D LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVD-LWRSMSSFKQDFA 120

Query: 121 EFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVW 180
             YKAY +LR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV    + I  N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNS--NGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           SD  C++RL GSVAK+LLVL VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]
BLAST of Carg20242 vs. TAIR10
Match: AT3G45577.1 (tRNA-intron endonucleases)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 50/99 (50.51%), Postives = 61/99 (61.62%), Query Frame = 0 

Query: 35  AQGLLSSCSVLYQADEEQAELLNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI 94
           A G LSSC+V      EQAELL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI
Sbjct: 24  ALGFLSSCNVFL---SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKI 83

Query: 95  -VDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKN 133
            + G+      D LW  ++S K  F   YKAY +LR KN
Sbjct: 84  SLHGRSLVNGVD-LWRSIRSFKPNFTILYKAYSHLRSKN 118

[Close]
BLAST of Carg20242 vs. Swiss-Prot
Match: sp|Q9LSS3|SEN22_ARATH (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.3e-71
Identity = 135/240 (56.25%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +LQ SL ++++ G LSSC+VL   + EQAELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR ++SAEK K+W Q   EEAF+L Y+L C+KI     C +N  + WLYMKS++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           F+KAY +LR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS-----GDSDRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSN--GNRSVSPSCLDSYSIEERTVTRWSPEQCRENPAT 239
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+ +T
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 235

[Close]
BLAST of Carg20242 vs. Swiss-Prot
Match: sp|Q9M1E8|SEN21_ARATH (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.6e-70
Identity = 137/238 (57.56%), Postives = 170/238 (71.43%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +L+SSLTQ++A G LSSC+VL   + E+AELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFDELWLYMKSQKATFP 120
           FGR +V AEKDK+W Q   EEAF+L Y L C+KI + G+  E   D LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVD-LWRSMSSFKQDFA 120

Query: 121 EFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVW 180
             YKAY +LR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV    + I  N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNS--NGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           SD  C++RL GSVAK+LLVL VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]
BLAST of Carg20242 vs. Swiss-Prot
Match: sp|Q5Z6B1|SEN2_ORYSJ (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.9e-60
Identity = 125/241 (51.87%), Postives = 156/241 (64.73%), Query Frame = 0 

Query: 2   GLRWK----GKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS--SCSVLYQADEEQAEL 61
           G RWK    GK   + A A+PMS IV +L++S   S    +LS    S +     EQA +
Sbjct: 5   GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64

Query: 62  LNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQK 121
           LNRA FG  I +A   K WFQ   EE FYL + LNC+++    + + +  ELW Y +S  
Sbjct: 65  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 124

Query: 122 ATFPEFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG-EGINENG 181
            +FPE YKAY +LR+KNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG E  N  G
Sbjct: 125 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 184

Query: 182 RLRVWSDFLCTIRLCGSVAKTLLVLTVNSNGNRSV-SPSCLDSYSIEERTVTRWSPEQCR 235
           RL VWSD LC +R  GSVAKTLLVLT++S+    + SP CL+   + ERT+TRW  +QCR
Sbjct: 185 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 244

[Close]
BLAST of Carg20242 vs. Swiss-Prot
Match: sp|Q6P7W5|SEN2_MOUSE (tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 48/162 (29.63%), Postives = 76/162 (46.91%), Query Frame = 0 

Query: 73  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKN 132
           ++ Q  +EEAF+L+Y L CL I   ++      +LW    + + TF   Y AY   R K 
Sbjct: 290 EYLQLSLEEAFFLAYALGCLSIYYEKE-PLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 349

Query: 133 WVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLR---VWSDFLCTIRLC 192
           WV + G +YG D + YR  P   H+ ++V++  E    N  G LR    W       R+ 
Sbjct: 350 WVPKVGLKYGTDLLLYRKGPPFYHASYSVII--ELLDDNYEGSLRRPFSWKSLAALSRVS 409

Query: 193 GSVAKTL----LVLTVNSNGNRSVSPSCLDSYSIEERTVTRW 228
           G+V+K L    L+           +P C+    ++E  ++RW
Sbjct: 410 GNVSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRW 448

[Close]
BLAST of Carg20242 vs. Swiss-Prot
Match: sp|Q5M954|SEN2_RAT (tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus OX=10116 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-14
Identity = 48/162 (29.63%), Postives = 76/162 (46.91%), Query Frame = 0 

Query: 73  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKN 132
           ++ Q  +EEAF+L+Y L CL I   ++      +LW    + + TF   Y AY   R K 
Sbjct: 293 EYLQLSLEEAFFLAYALGCLSIYYEKE-PLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 352

Query: 133 WVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLR---VWSDFLCTIRLC 192
           WV + G +YG D + YR  P   H+ ++V++  E    N  G LR    W       R+ 
Sbjct: 353 WVPKVGLKYGTDLLLYRKGPPFYHASYSVII--ELVDDNFEGSLRRPFSWKSLAALSRVS 412

Query: 193 GSVAKTL----LVLTVNSNGNRSVSPSCLDSYSIEERTVTRW 228
           G+V+K L    L+           +P C+    ++E  ++RW
Sbjct: 413 GNVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRW 451

[Close]
BLAST of Carg20242 vs. TrEMBL
Match: tr|A0A1S3CK86|A0A1S3CK86_CUCME (tRNA-splicing endonuclease subunit Sen2-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501916 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 4.9e-112
Identity = 198/237 (83.54%), Postives = 212/237 (89.45%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWKGK SEAKALADP+S  VL LQSS  QS+A+GLLS  ++LY ADEEQ +LLNR C
Sbjct: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR I++AEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NF ELW YMK+QKATFPE
Sbjct: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FY AY++LR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG   N NGRLRVWS
Sbjct: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWS 219

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 238
           DFLCTIRLCGSVAKTLLVL+VN NG+  VSPSCLDSYSIEERTVTRWSPEQCRENPA
Sbjct: 220 DFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPA 276

[Close]
BLAST of Carg20242 vs. TrEMBL
Match: tr|A0A0A0KEN4|A0A0A0KEN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 4.9e-112
Identity = 197/237 (83.12%), Postives = 211/237 (89.03%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWKGK SEAKALADP+S  +L LQSS   S+AQGLLS   +LY ADEEQ +LLNR C
Sbjct: 43  MAPRWKGKASEAKALADPISNTLLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPI++AEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNF ELW YMK+QKATFPE
Sbjct: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FY AY++LR+KNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG   N NGRLRVWS
Sbjct: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWS 222

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 238
           DFLCT+RLCGSVAKTLLVLTVN NG+  VSPSCLDSYSIEERTVTRWSPEQCRENPA
Sbjct: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPA 279

[Close]
BLAST of Carg20242 vs. TrEMBL
Match: tr|A0A2C9V1A8|A0A2C9V1A8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G140700 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 5.2e-98
Identity = 176/235 (74.89%), Postives = 200/235 (85.11%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWKGKGSEAKALADPMSKI+ QL +SL Q DAQGLLS CSVL   + EQ ELL RAC
Sbjct: 1   MAPRWKGKGSEAKALADPMSKIISQLCASLIQIDAQGLLSGCSVLLAVETEQIELLTRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPI+++EKDKQWFQ G+EEAFYL Y L CLKIV   +C KN  ELW YMKS+KA FP+
Sbjct: 61  FGRPIITSEKDKQWFQLGLEEAFYLCYSLKCLKIVGEDNCHKNAVELWQYMKSEKAAFPD 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAY +LRMKNWVVRPGSQYGVDFVAYRHHP+LVHSE+AVLVLSE +G + NGRLRVWS
Sbjct: 121 FYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLVLSEEDG-DVNGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           DF CTIRLCGSVAKTLLVL++N NG+ ++SPSCL+ YSI+E T+TRWSPEQ RE+
Sbjct: 181 DFHCTIRLCGSVAKTLLVLSINKNGHGAISPSCLERYSIKEHTITRWSPEQSRED 234

[Close]
BLAST of Carg20242 vs. TrEMBL
Match: tr|A0A067K4C8|A0A067K4C8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11452 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.7e-96
Identity = 174/235 (74.04%), Postives = 197/235 (83.83%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKAL DPMSKIV +L SSL Q  A GLLS CSVL   + EQ ELL RAC
Sbjct: 1   MGPRWKGKGSEAKALVDPMSKIVSELCSSLIQIAAHGLLSGCSVLLAVEAEQTELLTRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPI+ AEK+KQWFQ G+EEAFYL + L CLKIV   +C+K+  ELW YMKS+KATFP+
Sbjct: 61  FGRPIIVAEKEKQWFQLGLEEAFYLCHSLTCLKIVGEDNCQKDIVELWQYMKSKKATFPD 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAY +LRMKNWVVRPGSQYGVDFVAYRHHP+LVHSE+AVL+LSE +G + NGRLRVWS
Sbjct: 121 FYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLILSEEDG-DANGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           DF CT+RLCGSVAK LLVL VN NG+ ++SPSCL+ YS+EE TVTRWSPEQ REN
Sbjct: 181 DFHCTVRLCGSVAKKLLVLNVNKNGHGAISPSCLERYSVEEHTVTRWSPEQSREN 234

[Close]
BLAST of Carg20242 vs. TrEMBL
Match: tr|F6GTX7|F6GTX7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03380 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 4.1e-95
Identity = 172/234 (73.50%), Postives = 198/234 (84.62%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKG+EAKALA+PMS+IV QLQSSLT+SD+QGLLS CSVL +A  EQ ELLNR+C
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRP+++AEKDKQWFQ  MEEAFYL + L CLKIV   +  KN +ELW YMKS++ TFP+
Sbjct: 61  FGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETFPD 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FY AY +LR+KNWVVR GSQYGVDFVAYRHHPALVHSE+AVLVLSE E  N NGRLRVWS
Sbjct: 121 FYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSE-ENENANGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRE 235
           DF CTIRLCGSVAKTLLV+ +N NG+ + +P CL  YS+EERT+TRWS EQCRE
Sbjct: 181 DFDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233

The following BLAST results are available for this feature:
BLAST of Carg20242 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947593.11.2e-13398.33tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata][more]
XP_023532286.11.5e-13398.74tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo][more]
XP_022947592.13.4e-13398.33tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata][more]
XP_023007400.11.7e-12995.42tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita maxima][more]
XP_023007399.13.9e-12995.82tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg20242 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60230.21.8e-7256.25splicing endonuclease 2[more]
AT3G45590.12.0e-7157.56splicing endonuclease 1[more]
AT3G45577.11.5e-1850.51tRNA-intron endonucleases[more]
BLAST of Carg20242 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LSS3|SEN22_ARATH3.3e-7156.25tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
sp|Q9M1E8|SEN21_ARATH3.6e-7057.56tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
sp|Q5Z6B1|SEN2_ORYSJ9.9e-6051.87Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica... [more]
sp|Q6P7W5|SEN2_MOUSE1.7e-1429.63tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 S... [more]
sp|Q5M954|SEN2_RAT2.2e-1429.63tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus OX=10116 GN=Tsen2 P... [more]
BLAST of Carg20242 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CK86|A0A1S3CK86_CUCME4.9e-11283.54tRNA-splicing endonuclease subunit Sen2-1 isoform X1 OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0KEN4|A0A0A0KEN4_CUCSA4.9e-11283.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=4 SV=1[more]
tr|A0A2C9V1A8|A0A2C9V1A8_MANES5.2e-9874.89Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G140700 PE=4 SV=... [more]
tr|A0A067K4C8|A0A067K4C8_JATCU1.7e-9674.04Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11452 PE=4 SV=1[more]
tr|F6GTX7|F6GTX7_VITVI4.1e-9573.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03380 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: INTERPRO
TermDefinition
IPR036167tRNA_intron_Endo_cat-like_sf
IPR006676tRNA_splic
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR006678tRNA_intron_Endonuc_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000213 tRNA-intron endonuclease activity
molecular_function GO:0004518 nuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20242-RACarg20242-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 36..108
e-value: 1.7E-13
score: 49.9
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 121..206
e-value: 1.7E-20
score: 72.8
IPR011856tRNA endonuclease-like domain superfamilyGENE3DG3DSA:3.40.1350.10coord: 115..211
e-value: 7.7E-21
score: 76.0
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 71..235
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILYSSF53032tRNA-intron endonuclease catalytic domain-likecoord: 118..206

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20242Cla000542Watermelon (97103) v1carwmB0302
Carg20242Csa6G290260Cucumber (Chinese Long) v2carcuB0336
Carg20242MELO3C025739Melon (DHL92) v3.5.1carmeB0307
Carg20242ClCG02G020870Watermelon (Charleston Gray)carwcgB0299
Carg20242CSPI06G16170Wild cucumber (PI 183967)carcpiB0342
Carg20242Cucsa.052680Cucumber (Gy14) v1carcgyB0355
Carg20242CmaCh02G008670Cucurbita maxima (Rimu)carcmaB0425
Carg20242CmaCh20G004650Cucurbita maxima (Rimu)carcmaB0424
Carg20242CmoCh20G004990Cucurbita moschata (Rifu)carcmoB0420
Carg20242CmoCh02G008670Cucurbita moschata (Rifu)carcmoB0421
Carg20242Lsi10G013020Bottle gourd (USVL1VR-Ls)carlsiB279
Carg20242Cp4.1LG16g05490Cucurbita pepo (Zucchini)carcpeB0423
Carg20242CsGy6G015690Cucumber (Gy14) v2carcgybB0320
Carg20242MELO3C025739.2Melon (DHL92) v3.6.1carmedB0317
Carg20242CsaV3_6G021540Cucumber (Chinese Long) v3carcucB0341
Carg20242Bhi10G000486Wax gourdcarwgoB0392
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20242Carg03262Silver-seed gourdcarcarB330
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20242Silver-seed gourdcarcarB185
Carg20242Silver-seed gourdcarcarB332
Carg20242Silver-seed gourdcarcarB337
Carg20242Cucumber (Gy14) v2carcgybB0318
Carg20242Cucumber (Gy14) v1carcgyB0358
Carg20242Cucurbita maxima (Rimu)carcmaB0427
Carg20242Cucurbita maxima (Rimu)carcmaB0428
Carg20242Cucurbita maxima (Rimu)carcmaB0429
Carg20242Cucurbita maxima (Rimu)carcmaB0422
Carg20242Cucurbita moschata (Rifu)carcmoB0418
Carg20242Cucurbita moschata (Rifu)carcmoB0422
Carg20242Cucurbita moschata (Rifu)carcmoB0423
Carg20242Cucurbita pepo (Zucchini)carcpeB0424
Carg20242Cucurbita pepo (Zucchini)carcpeB0427
Carg20242Cucurbita pepo (Zucchini)carcpeB0429
Carg20242Cucurbita pepo (Zucchini)carcpeB0430
Carg20242Wild cucumber (PI 183967)carcpiB0338
Carg20242Wild cucumber (PI 183967)carcpiB0340
Carg20242Cucumber (Chinese Long) v2carcuB0332
Carg20242Cucumber (Chinese Long) v2carcuB0334
Carg20242Cucumber (Chinese Long) v3carcucB0339
Carg20242Bottle gourd (USVL1VR-Ls)carlsiB282
Carg20242Melon (DHL92) v3.5.1carmeB0305
Carg20242Melon (DHL92) v3.5.1carmeB0310
Carg20242Melon (DHL92) v3.6.1carmedB0319
Carg20242Watermelon (Charleston Gray)carwcgB0297
Carg20242Watermelon (97103) v1carwmB0297
Carg20242Watermelon (97103) v2carwmbB0313
Carg20242Watermelon (97103) v2carwmbB0315
Carg20242Watermelon (97103) v2carwmbB0318
Carg20242Wax gourdcarwgoB0391