Cucsa.049860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.049860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Non-specific lipid-transfer protein
Location	scaffold00551 : 41872 .. 43065 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAACCCAGCCTCTTCACCCTCCATAAGTTTCCAAAAGCACATTTCCCATAAAGCAGTTAGCGCCATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGTATGAATAGTTAGACTCTAAAATATGATTTAAAATTTTCGTTATTGTTTTGCACGATCACTAGGTCTATTATATATTCATGTTTCAGAGAGAATTTCATACTAACGTGGTGTTGTGTCCAACATACTCTAATGCTTAAATATAGTGCCGAGTACACCTTATATTAGAGACTTTTGTTGTGTTAATGGGGAGAGTCTAATAACCTATTAGTTGGTTTAGGATTTCTTTATCTCTTTTTTTGTAAGGGGGAGTTGTCTCCGCTTTGTTAGTTCCATTTTACGAAGCAATCTTTTATTTCCTCTTTTGAGATCTATGTTCATGTGATTGGGGCCCTTCAATTTCAACTCTTATAACCATTCTTCACCATTCCTTAATTAACAAAACTTAAACTTCAAACTATTCTTTAAATTAACTCTCATATATATACACATGTAGTTTCTTCCTTAATGTAACTTGAACAAACTAATGCTAGAATTAACTTAGCTAATTATGGGGTTTTTTTTTGTGTTTTTAATTTTCAGGATTAATTGATGATTATGAGAGAGGATTTGATCAGAAGAGACCAGAAATGACAGAATTCTACCTATAAAGTTGGAGAAAAGTACTACATCATTATATTATTATCATATTATCATATATAATGCAATAAAATAAAACTAGCTGGAATGGAATCTAATCCCATGGATTTTTAGATTCCTTTTTGTTCTTTTAATTTATACCATGTGATGAAGTGTGTGCCTTTTGTTTTTGTTCTTATATATATTTACTTATAAAAAA

mRNA sequence

TTCAAACCCAGCCTCTTCACCCTCCATAAGTTTCCAAAAGCACATTTCCCATAAAGCAGTTAGCGCCATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGATTAATTGATGATTATGAGAGAGGATTTGATCAGAAGAGACCAGAAATGACAGAATTCTACCTATAAAGTTGGAGAAAAGTACTACATCATTATATTATTATCATATTATCATATATAATGCAATAAAATAAAACTAGCTGGAATGGAATCTAATCCCATGGATTTTTAGATTCCTTTTTGTTCTTTTAATTTATACCATGTGATGAAGTGTGTGCCTTTTGTTTTTGTTCTTATATATATTTACTTATAAAAAA

Coding sequence (CDS)

ATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGATTAATTGA

Protein sequence

MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN*

Homology

[Close]

BLAST of Cucsa.049860 vs. Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 15  LLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKK 74
           +L +F + + S++ ISCS V +DL PCVSYL SGSG PP  CCDG K+L++A T+SADKK
Sbjct: 12  VLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKK 71

Query: 75  AACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
           AAC+CIKS A++V    +LAQ L SNCG SLP   S  +DC+ +
Sbjct: 72  AACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Cucsa.049860 vs. Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 1


Query: 5   RAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALS 64
           RAA  +L  V L   +LL  + A ISC  V+  L PC+SY      KPP+ACC G K L+
Sbjct: 3   RAAASQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLA 62

Query: 65  SAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            AA S+ADK+AAC+CIKSAA  +  N   A  +PS CG+S+P++ISA +DCSKI
Sbjct: 63  GAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Cucsa.049860 vs. Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-25
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 5   RAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALS 64
           RAA  +L  V +   +LL  + A ISC  V+  L PC+SY      KPP ACC G K L+
Sbjct: 3   RAAATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLA 62

Query: 65  SAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            AA S+ADK+AAC+CIKSAA  +  N   A  +PS CG+S+P++ISA +DCSKI
Sbjct: 63  GAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Cucsa.049860 vs. Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.7e-25
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 5   RAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALS 64
           RAA  +L  V +   +L+  + A ISC  V+  L PC+SY      KPP ACC G K L+
Sbjct: 3   RAAATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLA 62

Query: 65  SAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            AA S+ADK+AAC+CIKSAA  +  N   A  +PS CG+S+P++ISA +DCSKI
Sbjct: 63  GAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Cucsa.049860 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1


Query: 5   RAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALS 64
           RAA  +L  V +   +LL  + A ISC  V+  L PC+SY      KPP ACC G K L+
Sbjct: 3   RAAATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLA 62

Query: 65  SAATSSADKKAACECIKSAASNV-NYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
            AA S+ADK+AAC C+KS A+++   N+     +P  CG+S+PF IS   DC+K++
Sbjct: 63  GAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKVH 118

[Close]

BLAST of Cucsa.049860 vs. TrEMBL
Match: A0A0A0K657_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430200 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA 60
           MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA
Sbjct: 1   MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA 60

Query: 61  KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN
Sbjct: 61  KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 119

[Close]

BLAST of Cucsa.049860 vs. TrEMBL
Match: M5XL89_PRUPE (Non-specific lipid-transfer protein OS=Prunus persica GN=PRUPE_ppa013464mg PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 8   IPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAA 67
           IP   A++  + LL  VS+AT+SCSDVTKDL PC+SYL++GSGKPP+ACC GA AL+SAA
Sbjct: 10  IPTTAALIGCLLLLATVSEATLSCSDVTKDLRPCLSYLVNGSGKPPAACCAGASALASAA 69

Query: 68  TSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
           ++SADKKAAC CIKSAA  +N  V+LAQ LP NCGI+LPF+IS   DCSK+
Sbjct: 70  STSADKKAACGCIKSAAQKINLKVQLAQALPGNCGINLPFTISPNTDCSKV 120

[Close]

BLAST of Cucsa.049860 vs. TrEMBL
Match: B9HPQ3_POPTR (Non-specific lipid-transfer protein OS=Populus trichocarpa GN=POPTR_0009s03020g PE=3 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 13  AVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSAD 72
           A L+   LL   S A ISCSDV KDL PCV+YL SG+GKPPSACC GA AL SAA+S+AD
Sbjct: 12  AALMMFLLLAPTSDAAISCSDVIKDLRPCVNYLTSGTGKPPSACCAGASALQSAASSTAD 71

Query: 73  KKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           KKAACECIKSA+ ++N N +LAQ LP+NCGISLP++IS  +DCSKI+
Sbjct: 72  KKAACECIKSASKSLNPNPQLAQALPANCGISLPYTISPSVDCSKIS 118

[Close]

BLAST of Cucsa.049860 vs. TrEMBL
Match: A0A067J9E1_JATCU (Non-specific lipid-transfer protein OS=Jatropha curcas GN=JCGZ_05250 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-33
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 13  AVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSAD 72
           A LL + LL   S+A I+CSDV KDL PCV+YL+ GSG PP+ACC GAKALSS AT++AD
Sbjct: 7   AALLLLVLLAPASEAAIACSDVIKDLRPCVNYLVKGSGIPPAACCAGAKALSSVATTTAD 66

Query: 73  KKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           K+AAC CIKSAA N+N N +LAQ LPSNCGIS P+++S  +DCS+IN
Sbjct: 67  KRAACACIKSAAQNINPNSQLAQALPSNCGISFPYTVSPNVDCSQIN 113

[Close]

BLAST of Cucsa.049860 vs. TrEMBL
Match: I1MJG4_SOYBN (Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_15G265900 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 11  LGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSS 70
           L  ++L + LL   S+A ISCSDV KDL PCVSYL+SGSG+PP+ACC GAKAL+SAAT+S
Sbjct: 7   LATLVLLILLLASTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTS 66

Query: 71  ADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            DKKAAC CIKS + ++N N +LAQ LP NCGI+LP +IS   DCSK+
Sbjct: 67  EDKKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNADCSKV 114

[Close]

BLAST of Cucsa.049860 vs. TAIR10
Match: AT2G18370.1 (AT2G18370.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-29
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 15  LLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKK 74
           +L +F + + S++ ISCS V +DL PCVSYL SGSG PP  CCDG K+L++A T+SADKK
Sbjct: 12  VLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKK 71

Query: 75  AACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
           AAC+CIKS A++V    +LAQ L SNCG SLP   S  +DC+ +
Sbjct: 72  AACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Cucsa.049860 vs. TAIR10
Match: AT5G01870.1 (AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-18
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 15  LLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKK 74
           LL   +    S+A ISC+ V  +L PCV Y++ G G  P +CC+G + LS  ATS++DK+
Sbjct: 10  LLLASIFAWGSEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQATSASDKQ 69

Query: 75  AACECIKSAASNVNYN---VKLAQDLPSNCGISLPFSISAGIDCSKI 119
             C CIKS    V+Y+   +K A  LP  CG+ LP+ I    +C+ I
Sbjct: 70  GVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

[Close]

BLAST of Cucsa.049860 vs. TAIR10
Match: AT5G59320.1 (AT5G59320.1 lipid transfer protein 3)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 13  AVLLFVFLLLQVS-----KATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAA 72
           A+  F  L+L V       A ISC  V   L PC +YL  G   PPS CC G K L+S A
Sbjct: 4   ALRFFTCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSMA 63

Query: 73  TSSADKKAACECIKSAASNVN-YNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            ++ D++ AC CI+S A +++  N  LA  LP  CG+S+P+ IS   +C+ I
Sbjct: 64  KTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Cucsa.049860 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-17
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 20  LLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKKAACEC 79
           L L   +A +SC+ V  DL PC+SY+  G G  P+ CC+G   L S A +S D++  C C
Sbjct: 12  LALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDRQGVCRC 71

Query: 80  IKSAASNVNYN---VKLAQDLPSNCGISLPFSISAGIDC 116
           IKSA   +  +   ++ A +LPS CG+ LP+  S   DC
Sbjct: 72  IKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109

[Close]

BLAST of Cucsa.049860 vs. TAIR10
Match: AT5G59310.1 (AT5G59310.1 lipid transfer protein 4)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 15  LLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADKK 74
           +L VF++  V  A I+C  V   L PC+ YL  G   PP  CC G K L+  A ++ D++
Sbjct: 12  VLTVFIVASVD-AAITCGTVASSLSPCLGYLSKGGVVPPP-CCAGVKKLNGMAQTTPDRQ 71

Query: 75  AACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
            AC C++SAA  V  N  LA  LP  CG+S+P+ IS   +C+ I
Sbjct: 72  QACRCLQSAAKGV--NPSLASGLPGKCGVSIPYPISTSTNCATI 111

[Close]

BLAST of Cucsa.049860 vs. NCBI nr
Match: gi|449436232|ref|XP_004135897.1| (PREDICTED: non-specific lipid-transfer protein 8-like [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA 60
           MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA
Sbjct: 1   MVTLRAAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGA 60

Query: 61  KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN
Sbjct: 61  KALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 119

[Close]

BLAST of Cucsa.049860 vs. NCBI nr
Match: gi|659122587|ref|XP_008461223.1| (PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-53
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 6   AAIPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSS 65
           A IPKLGA+LLFVFLLL VSKATISCSDVTKDLMPCVSYL+SGSGKPPSACCDGAKALSS
Sbjct: 2   ATIPKLGAILLFVFLLLGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSS 61

Query: 66  AATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           AATS ADKKAAC+CIKSAASNVNYN KLAQDLPSNCGI+LPFSISAGIDCSKIN
Sbjct: 62  AATSGADKKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSKIN 115

[Close]

BLAST of Cucsa.049860 vs. NCBI nr
Match: gi|596011376|ref|XP_007218611.1| (hypothetical protein PRUPE_ppa013464mg [Prunus persica])

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 8   IPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAA 67
           IP   A++  + LL  VS+AT+SCSDVTKDL PC+SYL++GSGKPP+ACC GA AL+SAA
Sbjct: 10  IPTTAALIGCLLLLATVSEATLSCSDVTKDLRPCLSYLVNGSGKPPAACCAGASALASAA 69

Query: 68  TSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
           ++SADKKAAC CIKSAA  +N  V+LAQ LP NCGI+LPF+IS   DCSK+
Sbjct: 70  STSADKKAACGCIKSAAQKINLKVQLAQALPGNCGINLPFTISPNTDCSKV 120

[Close]

BLAST of Cucsa.049860 vs. NCBI nr
Match: gi|645250815|ref|XP_008231388.1| (PREDICTED: non-specific lipid-transfer protein 8-like [Prunus mume])

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-34
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 8   IPKLGAVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAA 67
           IP   A++  +FLL  VS+A ISCSDVTKDL PC+SYL++GSG PP+ACC GA AL+SAA
Sbjct: 10  IPTTAALIGCLFLLATVSEAAISCSDVTKDLRPCLSYLVNGSGMPPAACCAGASALASAA 69

Query: 68  TSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKI 119
           ++SADKKAAC CIKSAA  +N  V+LAQ LP NCGI+LPF+IS   DCSK+
Sbjct: 70  STSADKKAACGCIKSAAQKINLKVQLAQALPGNCGINLPFTISPNTDCSKV 120

[Close]

BLAST of Cucsa.049860 vs. NCBI nr
Match: gi|566186027|ref|XP_002314213.2| (hypothetical protein POPTR_0009s03020g [Populus trichocarpa])

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-33
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 13  AVLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSAD 72
           A L+   LL   S A ISCSDV KDL PCV+YL SG+GKPPSACC GA AL SAA+S+AD
Sbjct: 12  AALMMFLLLAPTSDAAISCSDVIKDLRPCVNYLTSGTGKPPSACCAGASALQSAASSTAD 71

Query: 73  KKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 120
           KKAACECIKSA+ ++N N +LAQ LP+NCGISLP++IS  +DCSKI+
Sbjct: 72  KKAACECIKSASKSLNPNPQLAQALPANCGISLPYTISPSVDCSKIS 118

The following BLAST results are available for this feature:

BLAST of Cucsa.049860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP8_ARATH	3.8e-28	55.77	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1	[more]
NLT41_HORVU	1.3e-25	50.88	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1	[more]
NLT43_HORVU	5.1e-25	50.00	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1	[more]
NLT42_HORVU	8.7e-25	49.12	Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1	[more]
NLTP3_HORVU	1.1e-22	43.97	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1	[more]

BLAST of Cucsa.049860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K657_CUCSA	2.2e-59	100.00	Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430200 PE=3 SV=1	[more]
M5XL89_PRUPE	1.4e-34	65.77	Non-specific lipid-transfer protein OS=Prunus persica GN=PRUPE_ppa013464mg PE=3 ...	[more]
B9HPQ3_POPTR	1.6e-33	67.29	Non-specific lipid-transfer protein OS=Populus trichocarpa GN=POPTR_0009s03020g ...	[more]
A0A067J9E1_JATCU	2.7e-33	65.42	Non-specific lipid-transfer protein OS=Jatropha curcas GN=JCGZ_05250 PE=3 SV=1	[more]
I1MJG4_SOYBN	4.6e-33	63.89	Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_15G265900 PE=3 SV=1	[more]

BLAST of Cucsa.049860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18370.1	2.1e-29	55.77	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G01870.1	4.9e-18	41.12	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G59320.1	3.2e-17	41.07	lipid transfer protein 3	[more]
AT3G08770.2	5.4e-17	40.40	lipid transfer protein 6	[more]
AT5G59310.1	7.1e-17	41.35	lipid transfer protein 4	[more]

BLAST of Cucsa.049860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436232\|ref\|XP_004135897.1\|	3.2e-59	100.00	PREDICTED: non-specific lipid-transfer protein 8-like [Cucumis sativus]	[more]
gi\|659122587\|ref\|XP_008461223.1\|	4.4e-53	92.98	PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo]	[more]
gi\|596011376\|ref\|XP_007218611.1\|	2.1e-34	65.77	hypothetical protein PRUPE_ppa013464mg [Prunus persica]	[more]
gi\|645250815\|ref\|XP_008231388.1\|	4.6e-34	65.77	PREDICTED: non-specific lipid-transfer protein 8-like [Prunus mume]	[more]
gi\|566186027\|ref\|XP_002314213.2\|	2.3e-33	67.29	hypothetical protein POPTR_0009s03020g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.049860.1	Cucsa.049860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 106..117 score: 2.4E-23coord: 30..46 score: 2.4E-23coord: 72..87 score: 2.4E-23coord: 51..65 score: 2.4E-23coord: 88..105 score: 2.4
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 97..118 scor
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 31..115 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 31..115 score: 5.2
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..118 score: 2.41
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 29..119 score: 6.2
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 13..119 score: 1.9
None	No IPR available	PANTHER	PTHR33076:SF4	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 13..119 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.049860	Cla015292	Watermelon (97103) v1	cgywmB031
Cucsa.049860	Csa7G430200	Cucumber (Chinese Long) v2	cgycuB031
Cucsa.049860	MELO3C023497	Melon (DHL92) v3.5.1	cgymeB029
Cucsa.049860	ClCG09G003610	Watermelon (Charleston Gray)	cgywcgB033
Cucsa.049860	CSPI07G19770	Wild cucumber (PI 183967)	cgycpiB032
Cucsa.049860	CmaCh08G005670	Cucurbita maxima (Rimu)	cgycmaB0052
Cucsa.049860	CmoCh08G005600	Cucurbita moschata (Rifu)	cgycmoB0047
Cucsa.049860	Lsi02G026320	Bottle gourd (USVL1VR-Ls)	cgylsiB030
Cucsa.049860	Cp4.1LG17g08390	Cucurbita pepo (Zucchini)	cgycpeB0048
Cucsa.049860	MELO3C023497.2	Melon (DHL92) v3.6.1	cgymedB027
Cucsa.049860	CsaV3_7G031570	Cucumber (Chinese Long) v3	cgycucB033
Cucsa.049860	Cla97C09G165870	Watermelon (97103) v2	cgywmbB030
Cucsa.049860	Bhi09G000465	Wax gourd	cgywgoB034
Cucsa.049860	Carg13482	Silver-seed gourd	carcgyB0519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.049860	Cucurbita maxima (Rimu)	cgycmaB0050
Cucsa.049860	Cucurbita moschata (Rifu)	cgycmoB0046
Cucsa.049860	Wild cucumber (PI 183967)	cgycpiB031
Cucsa.049860	Cucumber (Chinese Long) v2	cgycuB030
Cucsa.049860	Silver-seed gourd	carcgyB0413