Cucsa.047770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.047770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold00542 : 2667534 .. 2668777 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTGTTCTTTCTATGCTCACGAAGAGATTAGAGAGATTGAGTAAAGGGCAGATTCGGAAAAGTAATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCTGAGGTCATCAAGGCCGTTTAATTTCACCATCCTTCTTTCCTCGTAATTAACGGGTGAGGCATTTTGTTATTCTCGTGAATCGTATTCCGGATTTTAGAATCTTCAGTTCGGGTTGAGGATTTCTCTTTTGAATTGGGTCTACCCATTGCTGCTTCAAGAATGGTCAACGGATTGCAGTGTAAAAATTTATTTGTTTTGTTTTGCTTGTTCGATCTCTAATTCTTTTTAATATAGGGATGATCGGAACTGTTTTCTTACTAGAATAAATGGAGTGTATAAATGTTTCTATATTATGTTGTAATTTAAAGGGGTTTGTGGTTGAGTGTTTAAGCTTAAACTTACTTGCTCGATTCAACTGAAGAAGCTGACTATGATTGGAATTCAAAACCTTAATATGAGTTTCTTTGAATATTTTTCTGAATAACCCAAAGAGTTAAATTCTGTTCAGAATTTGGATTACTGTTGTGTTTTAAATGATTGGTTTTTGTTTCTTTCTCTTCATCTTGGGTTGCTGAGTGATTATGGTGATAGTTTCATAAGTGTGTAGCAAATGTGCAATCTGATGGCAATCAAAGCTTAGGGGTGTTACAACATTAACATTGTGTCATCCATTAACCCCAAGAGAATCTCCGATCTTCATGTGTTTGAATTTGATTCAAGCTGTAGGTTGTTGGGAGTTAAAAGATTGTACGGAGCCGAAGGCAGAGGGTGAGTGTTGGTGTATCACTGTCAAAAAGGGAATGGACTTGTCGTATGGTCAATAGAGAGGAGCTACTAATTTCTTGTAACTCAAGCTCGAGATTTGGAGAAAATTTTGAATTTGTATTTGTATTTTTTGAAAAATTTACAAATTTCGAGAATATTTGAAGAAATGTTGACATTGTATGTTTGAATGATTATACTTTTGTTTATCCTTTGAAATTTCTGTGTTGACAACA

mRNA sequence

TGTTTGTTCTTTCTATGCTCACGAAGAGATTAGAGAGATTGAGTAAAGGGCAGATTCGGAAAAGTAATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCTGAGGTCATCAAGGCCGTTTAATTTCACCATCCTTCTTTCCTCGTAATTAACGGGTGAGGCATTTTGTTATTCTCGTGAATCGTATTCCGGATTTTAGAATCTTCAGTTCGGGTTGAGGATTTCTCTTTTGAATTGGGTCTACCCATTGCTGCTTCAAGAATGGTCAACGGATTGCAGTGTAAAAATTTATTTGTTTTGTTTTGCTTGTTCGATCTCTAATTCTTTTTAATATAGGGATGATCGGAACTGTTTTCTTACTAGAATAAATGGAGTGTATAAATGTTTCTATATTATGTTGTAATTTAAAGGGGTTTGTGGTTGAGTGTTTAAGCTTAAACTTACTTGCTCGATTCAACTGAAGAAGCTGACTATGATTGGAATTCAAAACCTTAATATGAGTTTCTTTGAATATTTTTCTGAATAACCCAAAGAGTTAAATTCTGTTCAGAATTTGGATTACTGTTGTGTTTTAAATGATTGGTTTTTGTTTCTTTCTCTTCATCTTGGGTTGCTGAGTGATTATGGTGATAGTTTCATAAGTGTGTAGCAAATGTGCAATCTGATGGCAATCAAAGCTTAGGGGTGTTACAACATTAACATTGTGTCATCCATTAACCCCAAGAGAATCTCCGATCTTCATGTGTTTGAATTTGATTCAAGCTGTAGGTTGTTGGGAGTTAAAAGATTGTACGGAGCCGAAGGCAGAGGGTGAGTGTTGGTGTATCACTGTCAAAAAGGGAATGGACTTGTCGTATGGTCAATAGAGAGGAGCTACTAATTTCTTGTAACTCAAGCTCGAGATTTGGAGAAAATTTTGAATTTGTATTTGTATTTTTTGAAAAATTTACAAATTTCGAGAATATTTGAAGAAATGTTGACATTGTATGTTTGAATGATTATACTTTTGTTTATCCTTTGAAATTTCTGTGTTGACAACA

Coding sequence (CDS)

ATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCTGAGGTCATCAAGGCCGTTTAA

Protein sequence

MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPNPNFTPDLDHTNPNHSSSTTSEVIKAV*

Homology

[Close]

BLAST of Cucsa.047770 vs. TrEMBL
Match: A0A0A0KLZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523430 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PNFTPDLDHTNPNHSSSTTSEVIKAV
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of Cucsa.047770 vs. TrEMBL
Match: M5WPL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014074mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-22
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEV--SDIRAPLN 60
          MGAIT+AVIAI  VV GWITIEIACKPCLE+GR+AIDR+LNPD+DPDD+V  SDIRAPLN
Sbjct: 1  MGAITSAVIAIVGVVLGWITIEIACKPCLEQGRQAIDRNLNPDYDPDDDVVSSDIRAPLN 60

Query: 61 PNPNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PN   T        +  ++ TS+ +KAV
Sbjct: 61 PNSTATTIHVEVEEDPKAAATSDALKAV 88

[Close]

BLAST of Cucsa.047770 vs. TrEMBL
Match: W9SEN6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021652 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.8e-22
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAIT+AVIAI  VV GWITIEIACKPCLEKGREAIDRSL+P++DPDD  +DI+APLNPN
Sbjct: 1  MGAITSAVIAIAGVVLGWITIEIACKPCLEKGREAIDRSLDPNYDPDD--NDIQAPLNPN 60

Query: 61 ---PNFTPDLDHTNPNHSSSTTSEVIKAV 87
              N   D +  + +  ++TTS+ IKAV
Sbjct: 61 SHPQNLVLDPNSDSASSPATTTSDAIKAV 87

[Close]

BLAST of Cucsa.047770 vs. TrEMBL
Match: A0A061GCX4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029473 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDE-VSDIRAPLNP 60
          M AIT+AVIAI  VV GWI IEIACKPCLE+GREAIDRSLNPD+DPDD+  +++RAPLNP
Sbjct: 1  MAAITSAVIAIAGVVLGWIAIEIACKPCLERGREAIDRSLNPDYDPDDDNDNNVRAPLNP 60

Query: 61 NPNFTPDLDHTNPNHSSSTTSEVIKAV 87
              +PDL+    N +S +TS  IKAV
Sbjct: 61 ----SPDLESKADNDTSPSTS--IKAV 81

[Close]

BLAST of Cucsa.047770 vs. TrEMBL
Match: A0A151RWE5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031543 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-20
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAIT+AVIA+  V+ GWITIEIACKPCLEKGREAIDRSL+P++DPD + + IRAPLNP 
Sbjct: 1  MGAITSAVIAVVGVILGWITIEIACKPCLEKGREAIDRSLDPNYDPDQQDTAIRAPLNP- 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
                     P+HS + +S  +KAV
Sbjct: 61 --------AAVPDHSPAASSAAVKAV 77

[Close]

BLAST of Cucsa.047770 vs. TAIR10
Match: AT2G34585.1 (AT2G34585.1 unknown protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-21
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDE----VSDIRAP 60
          M AIT+AVIAI  ++ GWITIE+ACKPCLE GREAIDRSLNPD+DPDD+     SD+RAP
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

Query: 61 LNPN---PNFTPD 67
          L PN    N  PD
Sbjct: 61 LIPNHPPDNSDPD 73

[Close]

BLAST of Cucsa.047770 vs. NCBI nr
Match: gi|778721402|ref|XP_011658293.1| (PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PNFTPDLDHTNPNHSSSTTSEVIKAV
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of Cucsa.047770 vs. NCBI nr
Match: gi|659078249|ref|XP_008439626.1| (PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPD+DPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           NFTPDLD TNP+H SSTTSEVIKAV
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of Cucsa.047770 vs. NCBI nr
Match: gi|1009174056|ref|XP_015868146.1| (PREDICTED: outer envelope membrane protein 7 [Ziziphus jujuba])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 65/92 (70.65%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAIT AVIAI  VV GWITIEIACKPCLEKGREAID SLNPD+DPDD  + IRAPL PN
Sbjct: 1  MGAITAAVIAIAGVVVGWITIEIACKPCLEKGREAIDHSLNPDYDPDDAPTTIRAPLYPN 60

Query: 61 PNFTPDLDHTNPNH------SSSTTSEVIKAV 87
          PN +PDL     NH      SSST+ +VIKAV
Sbjct: 61 PNPSPDLHEPTHNHPNPPLVSSSTSHDVIKAV 92

[Close]

BLAST of Cucsa.047770 vs. NCBI nr
Match: gi|595904625|ref|XP_007213992.1| (hypothetical protein PRUPE_ppa014074mg [Prunus persica])

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-22
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEV--SDIRAPLN 60
          MGAIT+AVIAI  VV GWITIEIACKPCLE+GR+AIDR+LNPD+DPDD+V  SDIRAPLN
Sbjct: 1  MGAITSAVIAIVGVVLGWITIEIACKPCLEQGRQAIDRNLNPDYDPDDDVVSSDIRAPLN 60

Query: 61 PNPNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PN   T        +  ++ TS+ +KAV
Sbjct: 61 PNSTATTIHVEVEEDPKAAATSDALKAV 88

[Close]

BLAST of Cucsa.047770 vs. NCBI nr
Match: gi|703154499|ref|XP_010110958.1| (hypothetical protein L484_021652 [Morus notabilis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAIT+AVIAI  VV GWITIEIACKPCLEKGREAIDRSL+P++DPDD  +DI+APLNPN
Sbjct: 1  MGAITSAVIAIAGVVLGWITIEIACKPCLEKGREAIDRSLDPNYDPDD--NDIQAPLNPN 60

Query: 61 ---PNFTPDLDHTNPNHSSSTTSEVIKAV 87
              N   D +  + +  ++TTS+ IKAV
Sbjct: 61 SHPQNLVLDPNSDSASSPATTTSDAIKAV 87

The following BLAST results are available for this feature:

BLAST of Cucsa.047770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLZ9_CUCSA	3.0e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523430 PE=4 SV=1	[more]
M5WPL9_PRUPE	2.7e-22	64.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014074mg PE=4 SV=1	[more]
W9SEN6_9ROSA	7.8e-22	65.17	Uncharacterized protein OS=Morus notabilis GN=L484_021652 PE=4 SV=1	[more]
A0A061GCX4_THECC	2.5e-20	65.52	Uncharacterized protein OS=Theobroma cacao GN=TCM_029473 PE=4 SV=1	[more]
A0A151RWE5_CAJCA	9.5e-20	60.47	Uncharacterized protein OS=Cajanus cajan GN=KK1_031543 PE=4 SV=1	[more]

BLAST of Cucsa.047770 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34585.1	2.6e-21	67.12	unknown protein	[more]

BLAST of Cucsa.047770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778721402\|ref\|XP_011658293.1\|	4.3e-42	100.00	PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]	[more]
gi\|659078249\|ref\|XP_008439626.1\|	1.7e-38	94.19	PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo]	[more]
gi\|1009174056\|ref\|XP_015868146.1\|	2.6e-26	70.65	PREDICTED: outer envelope membrane protein 7 [Ziziphus jujuba]	[more]
gi\|595904625\|ref\|XP_007213992.1\|	3.8e-22	64.77	hypothetical protein PRUPE_ppa014074mg [Prunus persica]	[more]
gi\|703154499\|ref\|XP_010110958.1\|	1.1e-21	65.17	hypothetical protein L484_021652 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.047770.1	Cucsa.047770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 1..79 score: 1.8
None	No IPR available	PANTHER	PTHR33982:SF3	SUBFAMILY NOT NAMED	coord: 1..79 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.047770	Cla009778	Watermelon (97103) v1	cgywmB026
Cucsa.047770	Csa6G523430	Cucumber (Chinese Long) v2	cgycuB027
Cucsa.047770	MELO3C007128	Melon (DHL92) v3.5.1	cgymeB027
Cucsa.047770	ClCG01G024670	Watermelon (Charleston Gray)	cgywcgB022
Cucsa.047770	CSPI06G36330	Wild cucumber (PI 183967)	cgycpiB028
Cucsa.047770	CmaCh03G014030	Cucurbita maxima (Rimu)	cgycmaB0045
Cucsa.047770	CmoCh03G013960	Cucurbita moschata (Rifu)	cgycmoB0040
Cucsa.047770	Lsi01G001410	Bottle gourd (USVL1VR-Ls)	cgylsiB022
Cucsa.047770	Cp4.1LG10g06090	Cucurbita pepo (Zucchini)	cgycpeB0034
Cucsa.047770	MELO3C007128.2	Melon (DHL92) v3.6.1	cgymedB025
Cucsa.047770	CsaV3_6G051780	Cucumber (Chinese Long) v3	cgycucB028
Cucsa.047770	Cla97C01G024620	Watermelon (97103) v2	cgywmbB017
Cucsa.047770	Bhi03G000080	Wax gourd	cgywgoB025
Cucsa.047770	Carg19273	Silver-seed gourd	carcgyB0350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.047770	Watermelon (97103) v2	cgywmbB024
Cucsa.047770	Wax gourd	cgywgoB029
Cucsa.047770	Cucurbita maxima (Rimu)	cgycmaB0048
Cucsa.047770	Cucurbita maxima (Rimu)	cgycmaB0035
Cucsa.047770	Cucurbita maxima (Rimu)	cgycmaB0037
Cucsa.047770	Cucurbita moschata (Rifu)	cgycmoB0033
Cucsa.047770	Cucurbita moschata (Rifu)	cgycmoB0034
Cucsa.047770	Cucurbita moschata (Rifu)	cgycmoB0043
Cucsa.047770	Wild cucumber (PI 183967)	cgycpiB018
Cucsa.047770	Cucumber (Chinese Long) v2	cgycuB017
Cucsa.047770	Melon (DHL92) v3.5.1	cgymeB019
Cucsa.047770	Watermelon (Charleston Gray)	cgywcgB027
Cucsa.047770	Watermelon (97103) v1	cgywmB022
Cucsa.047770	Cucurbita pepo (Zucchini)	cgycpeB0030
Cucsa.047770	Cucurbita pepo (Zucchini)	cgycpeB0039
Cucsa.047770	Cucurbita pepo (Zucchini)	cgycpeB0040
Cucsa.047770	Bottle gourd (USVL1VR-Ls)	cgylsiB023
Cucsa.047770	Melon (DHL92) v3.6.1	cgymedB019
Cucsa.047770	Silver-seed gourd	carcgyB0487
Cucsa.047770	Silver-seed gourd	carcgyB0822
Cucsa.047770	Silver-seed gourd	carcgyB0911
Cucsa.047770	Cucumber (Chinese Long) v3	cgycucB019