CsaV3_6G051780 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G051780
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	outer envelope membrane protein 7-like
Location	chr6 : 30115791 .. 30117191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGCATTGGCCCAAAAAGTAAGTATCGGTTTGTTTCGTCTCGGACTCTCGGGGAGTTGTTTGTTCTTTCTATGCTCACGAAGAGATTAGAGAGATTGAGTAAAGGGCAGATTCGGAAACGTAATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCCGAGGTCATCAAGGCCGTTTAATTTCACCATCCTTCTTTCCTCGTAATTAACGGGTGAGGCATTTTGTTATTCTCGTGAATCGTATTCCGGATTTTAGAATCTTCAGTTCGGGTTGAGGATTTCTCTTTTGAATTGGGTCTACCCATTGCTGCTTCAAGAATGGTCAACGGATTGCAGTGTAAAAATTTCTTTGTTTTGTTTTGCTTGTTCGATCTCTAATTCTTTTTAATATAGGGATGATCGGAACTGTTTTCTTACTAGAATAAATGGAGTGTATAAATGTTTCTATATTATGTTGTAATTTAAAGGGGTTTGTGGTTGAGTGTTTAAGCTTAAACTTACTTGCTCGATTCAACTGAAGAAGCTGACTATGATTGGAATTCAAAACCTTAATATGAGTTTCTTTGAATATTTTTCTGAATAACCCAAAGAGTTAAATTCTGTTCAGAATTTGGATTACTGTTGTGTTTTAAATGATTGGTTTTTGTTTCTTTCTCTTCATCTTGGGTTGCTGAGTGATTATGGTGATAGTTTCATAAGTGTGTAGCAAATGTGCAATCTGATGGCAATCAAAGCTTAGGGGTGTTACAACATTAACATTGTGTCATCCATTAACCCCAAGAGAATCTCCGATCTTCATGTGTTTGAATTTGATTCAAGCTGTAGGTTGTTGGGAGTTAAAAGATTGTATGGAGCCGAAGGCAGTGGGTGAGTGTTGGTGTATCACTGTCAAAAAGGGAATGGACTTGTCGTATGGTCAATAGAGAGGAGCTACTAATTTCTTGTAACTCAAGCTCGAGATTTGGAGAAAATTTTGAATTTGTATTTGTATTTTTTGAAAAATTTACAAATTTCGAGAATATTTGAAGAAATGTTGACATTGTATGTTTGAATGATTATACTTTTGTTTATCCTTTGAAATTTCTGTGTTGACAACAAATTTCGAAAATTTGATGTGCCTACGAAACTGCCAAGTCAATGGTGTTGGTTCTGTGAAGCTAATGCAGTATCTGCCTTTCATTATGAATATGATTAT

mRNA sequence

ATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCCGAGGTCATCAAGGCCGTTTAA

Coding sequence (CDS)

ATGGGGGCAATAACGACGGCCGTGATAGCAATCGGAGCGGTGGTTGCAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAGAAAGGTCGGGAAGCCATTGATCGTTCTCTCAATCCTGATTTCGATCCTGACGATGAAGTCTCCGACATTCGTGCTCCTCTAAATCCCAACCCCAATTTCACGCCAGATCTTGACCATACAAACCCTAACCATTCATCTTCCACCACTTCCGAGGTCATCAAGGCCGTTTAA

Protein sequence

MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPNPNFTPDLDHTNPNHSSSTTSEVIKAV

Homology

[Close]

BLAST of CsaV3_6G051780 vs. NCBI nr
Match: XP_011658293.1 (PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus] >KGN49402.1 hypothetical protein Csa_6G523430 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PNFTPDLDHTNPNHSSSTTSEVIKAV
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of CsaV3_6G051780 vs. NCBI nr
Match: XP_008439626.1 (PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 5.3e-36
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPD+DPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           NFTPDLD TNP+H SSTTSEVIKAV
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of CsaV3_6G051780 vs. NCBI nr
Match: XP_022925903.1 (uncharacterized protein LOC111433180 [Cucurbita moschata])

HSP 1 Score: 139.0 bits (349), Expect = 7.4e-30
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAV+ GWITIE ACKPCLEKGREAIDRSLNPD+DPDD+VSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           + +PDLD    +H SSTTSEV+K V
Sbjct: 61 ADLSPDLDGVKASHPSSTTSEVVKGV 86

[Close]

BLAST of CsaV3_6G051780 vs. NCBI nr
Match: XP_023543277.1 (uncharacterized protein LOC111803204 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 9.7e-30
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAV+ GWITIE ACKPCLEKGREAIDRSLNPD+DPDD+VSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           + +PDLD    +H SSTTSEV+K V
Sbjct: 61 ADLSPDLDVVKASHPSSTTSEVVKGV 86

[Close]

BLAST of CsaV3_6G051780 vs. NCBI nr
Match: XP_022979009.1 (uncharacterized protein LOC111478783 [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITT+VIAIGAV+ GWITIE ACKPCLEKGREAIDRSLNPD+DPDD+VSDIRAPLNPN
Sbjct: 1  MGAITTSVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           + +PDLD    +  SSTTSEV+K V
Sbjct: 61 ADLSPDLDGVKASRPSSTTSEVVKGV 86

[Close]

BLAST of CsaV3_6G051780 vs. TAIR10
Match: AT2G34585.1 (unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 9.4e-19
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDE----VSDIRAP 58
          M AIT+AVIAI  ++ GWITIE+ACKPCLE GREAIDRSLNPD+DPDD+     SD+RAP
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

[Close]

BLAST of CsaV3_6G051780 vs. TAIR10
Match: AT3G52420.1 (outer envelope membrane protein 7)

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 7  AVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDD 49
          A + + A+  GW+ IEIA KP L+K R +ID+S +P  DPDD
Sbjct: 10 ATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKS-DPTKDPDD 50

[Close]

BLAST of CsaV3_6G051780 vs. TrEMBL
Match: tr|A0A0A0KLZ9|A0A0A0KLZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523430 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.9e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PNFTPDLDHTNPNHSSSTTSEVIKAV
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of CsaV3_6G051780 vs. TrEMBL
Match: tr|A0A1S3AZV1|A0A1S3AZV1_CUCME (uncharacterized protein LOC103484363 OS=Cucumis melo OX=3656 GN=LOC103484363 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.5e-36
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPD+DPDDEVSDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 87
           NFTPDLD TNP+H SSTTSEVIKAV
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of CsaV3_6G051780 vs. TrEMBL
Match: tr|A0A2G5DII2|A0A2G5DII2_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000620v1 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.0e-20
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITT+VIAI A+V GWIT+EIACKPCL+KGREAIDRSL+P++DPDD+ + I+APLNPN
Sbjct: 11 MGAITTSVIAIAALVLGWITMEIACKPCLDKGREAIDRSLDPNYDPDDDNNSIQAPLNPN 70

Query: 61 PNFTPDLDHTNPNHSSSTTSEVI 84
          PN +PD D    N  + T ++++
Sbjct: 71 PNSSPD-DVKEHNAPTPTNTKIV 92

[Close]

BLAST of CsaV3_6G051780 vs. TrEMBL
Match: tr|M5WPL9|M5WPL9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G081500 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-20
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEV--SDIRAPLN 60
          MGAIT+AVIAI  VV GWITIEIACKPCLE+GR+AIDR+LNPD+DPDD+V  SDIRAPLN
Sbjct: 1  MGAITSAVIAIVGVVLGWITIEIACKPCLEQGRQAIDRNLNPDYDPDDDVVSSDIRAPLN 60

Query: 61 PNPNFTPDLDHTNPNHSSSTTSEVIKAV 87
          PN   T        +  ++ TS+ +KAV
Sbjct: 61 PNSTATTIHVEVEEDPKAAATSDALKAV 88

[Close]

BLAST of CsaV3_6G051780 vs. TrEMBL
Match: tr|A0A2G5E0E1|A0A2G5E0E1_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01300238v1 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-20
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60
          MGAITT+VIAI A+V GWIT+EIACKPCL+KGREAIDRSL+P++DPDD+ + I+APLNPN
Sbjct: 1  MGAITTSVIAIAALVLGWITMEIACKPCLDKGREAIDRSLDPNYDPDDDNNSIQAPLNPN 60

Query: 61 PNFTPD--LDHTNPNHSSS 78
          PN +PD   +H  P  +S+
Sbjct: 61 PNSSPDDVKEHNAPATAST 79

The following BLAST results are available for this feature:

BLAST of CsaV3_6G051780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658293.1	1.3e-39	100.00	PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus] >KGN49402.1 hy...	[more]
XP_008439626.1	5.3e-36	94.19	PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo]	[more]
XP_022925903.1	7.4e-30	80.23	uncharacterized protein LOC111433180 [Cucurbita moschata]	[more]
XP_023543277.1	9.7e-30	80.23	uncharacterized protein LOC111803204 [Cucurbita pepo subsp. pepo]	[more]
XP_022979009.1	1.4e-28	77.91	uncharacterized protein LOC111478783 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G051780 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34585.1	9.4e-19	72.13	unknown protein	[more]
AT3G52420.1	3.8e-04	50.00	outer envelope membrane protein 7	[more]

BLAST of CsaV3_6G051780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G051780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLZ9\|A0A0A0KLZ9_CUCSA	8.9e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523430 PE=4 SV=1	[more]
tr\|A0A1S3AZV1\|A0A1S3AZV1_CUCME	3.5e-36	94.19	uncharacterized protein LOC103484363 OS=Cucumis melo OX=3656 GN=LOC103484363 PE=...	[more]
tr\|A0A2G5DII2\|A0A2G5DII2_AQUCA	6.0e-20	63.86	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000620v1 PE=4...	[more]
tr\|M5WPL9\|M5WPL9_PRUPE	7.9e-20	64.77	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G081500 PE=4 SV=1	[more]
tr\|A0A2G5E0E1\|A0A2G5E0E1_AQUCA	7.9e-20	67.09	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01300238v1 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038944	OEP7-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G051780.1	CsaV3_6G051780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..86
None	No IPR available	PANTHER	PTHR33982:SF3	SUBFAMILY NOT NAMED	coord: 1..67
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G051780	CSPI06G36330	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G051780	Cucsa.047770	Cucumber (Gy14) v1	cgycucB028
CsaV3_6G051780	CmaCh03G014030	Cucurbita maxima (Rimu)	cmacucB0807
CsaV3_6G051780	CmoCh03G013960	Cucurbita moschata (Rifu)	cmocucB0791
CsaV3_6G051780	Cp4.1LG10g06090	Cucurbita pepo (Zucchini)	cpecucB0096
CsaV3_6G051780	Carg19273	Silver-seed gourd	carcucB0332
CsaV3_6G051780	Cla009778	Watermelon (97103) v1	cucwmB526
CsaV3_6G051780	MELO3C007128	Melon (DHL92) v3.5.1	cucmeB520
CsaV3_6G051780	ClCG01G024670	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G051780	Lsi01G001410	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G051780	MELO3C007128.2	Melon (DHL92) v3.6.1	cucmedB508
CsaV3_6G051780	Cla97C01G024620	Watermelon (97103) v2	cucwmbB430
CsaV3_6G051780	Bhi03G000080	Wax gourd	cucwgoB640

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G051780	Cucumber (Chinese Long) v3	cuccucB048
CsaV3_6G051780	Silver-seed gourd	carcucB0457
CsaV3_6G051780	Silver-seed gourd	carcucB0767
CsaV3_6G051780	Silver-seed gourd	carcucB0840
CsaV3_6G051780	Cucumber (Gy14) v2	cgybcucB047
CsaV3_6G051780	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G051780	Cucurbita maxima (Rimu)	cmacucB0265
CsaV3_6G051780	Cucurbita maxima (Rimu)	cmacucB0506
CsaV3_6G051780	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G051780	Cucurbita moschata (Rifu)	cmocucB0254
CsaV3_6G051780	Cucurbita moschata (Rifu)	cmocucB0494
CsaV3_6G051780	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G051780	Cucurbita pepo (Zucchini)	cpecucB0054
CsaV3_6G051780	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G051780	Cucurbita pepo (Zucchini)	cpecucB0650
CsaV3_6G051780	Wild cucumber (PI 183967)	cpicucB054
CsaV3_6G051780	Bottle gourd (USVL1VR-Ls)	cuclsiB465
CsaV3_6G051780	Melon (DHL92) v3.5.1	cucmeB464
CsaV3_6G051780	Melon (DHL92) v3.6.1	cucmedB454
CsaV3_6G051780	Watermelon (Charleston Gray)	cucwcgB483
CsaV3_6G051780	Watermelon (97103) v1	cucwmB506
CsaV3_6G051780	Watermelon (97103) v2	cucwmbB470
CsaV3_6G051780	Wax gourd	cucwgoB658