Cucsa.046280 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.046280
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description30S ribosomal protein S5, putative
Locationscaffold00542 : 1828358 .. 1830774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTCCGAACCCACAAACCTTCTCAATCTTTCCTTCAATGGCTTCTTCGACTCTCGTCCCCATTTCCTCTATTTCTCTTCGTTCTTCTCCTTCCCACCGCCTCTCAATTCCACTATTCAAGCCTTTCCCCCTCCTCCACTCCACTGTATTCCTACTCCCAATCTCCTCCTCCTCCTCTTCCTCCATTCTCTCTGCAACTCGGGCCAAATCCTCTGACATCGACACCACCTTCTTCGACAACGTCAATCCCCAAGAAGACATCGTTTACGACCCTCCCGAAGTCCCCGAAGGCTTCGTCCCTCCTCCCTCCTTCGATGAGGGCCCTATCGAAACCGAGGAAGAAATTGCCGCTGGTTACGAGGAGATCTATGGCCCCGCTTACAGTGGAGTCAGTGTTCTCGGAAACGACATTTATGTAATGGATTCTAAGGTCAAGAAAGCGGGCGGGTTCGGCTCCAAGGCCAAGAAGGACAAGCCGCGAGATGGGTTCGATGAGCGGGTTGTCCAAGTTCGGAGGGTTACTAAAGTGGTTAAAGGTGGGAAACAGTTACATTTTAGGGCAATTGTTGTTGTGGGTGATAAACAGGGCCAAGTGGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCACCGCTGTTCAGAAATCGGCAGTTAATGCTCGCCGGAACATTGTCACCGTTCCCATGACCAAGTATCTAACATTTCCCCACAGGTTTGTGACTATTTTCGATTTGCAAACTGGAATTGTTTGATTGGAGTTTCTGTAGCTGCTCTCTTGTTAAGCTTTTGGTTTGCTGATAATGGGAATGCATTCAATTAGGAGTATGAAACTTGAACCTAATGTGTTGATAAGTTAAGCATTACCATTTGAAAGGTGGATGGTTCAATCCCACCTCTGAAATGGGATTTAAGGAAGAGTAGAATTGGATGAGTACTTTGATTTATAGGAATCTTTGACTTAATTTTTCAACGGTTAATTGACATCTTTTTAAGTTAGTTAATACGAATTCTGTAATCTGTAGGCAGTTTAAACTTTGAATCCTCACTGCAAGTTGGTCATTGGAGGTATTTGCTGCTTCTGTGGCTGAATTTTGTAAATGTTTTTAGTTGTCTGTTGTAGATACTAGATGGTCTATTTCACAGTTTTGTCTACTCTGCTACAATTAAACTGTGGAGAACTTGTTGTTTCGACCGATCTTCCAGTGTTTCTATGGCTGAAAGAATCAGTACCCAATAAGCATATGGACAGCAAGAGATATATACACTGATTTCCTTTTTAGACGTAAATGTAAAGAGTTAAAAAGTATAGCAGATTCCAGGAAGTGAGAACCTAAATCAAATGAAGCTTCAAGTTATGAATGCTAGTGAAGTAATACTTTTGTCATATTCACATCTTGAGTTGCTGTGTGTTACTATAAGTGTTAGCTAAGGAGAGTTGAAAATTGTAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCCGGTGTCGAGAATGCTTTAGGGAAGCAACTTGGAAGTAATAATGCCCTCAACAATGCTAGAGCAACAGTGGTCGCCGTGCAGAAGATGAAACAGTTTAGGGACGTTGCACAAGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGAAGAGGGAAATGGTGAGGCTTCATTTTTCCTTCGTCTCATTTTTTTCTTTCACGTATATTAGTGCATCTATTCTTGTAACTCAGTGTTGTAAAAACAACAGTCAGGCTTCGTTCCTTTTGTTTCTTACCTCATTTCTTTACAACATATATTAGTTGACCTGTCTTGAAAAGGAATTGTGTTTATTTTTCTGTTGCTTCATTCTGCAAGTGGGTATTATTAAAATCTGAAGGATGTTGAAGGAATAAGAACATTGTTGTAAGTTTTCAGCTATCTAAAAATGTCAAAAAGTGAAGAGACTAAATTTGTAACTATTCTATAATCTACTCCAATAAAGAATGCTAATACTTTGGGAGTTTGAAGGTTCAGATTTATTTAGTTTTAGTGTCTAAAATAAAAATTTTTGTTTTAATAATATTTTAGAATATATTATCCTCTTTAATAATTTCTAAAAAATTTCCATTCCTTCAGTAATGGTGTCTGCAGAGACATTGAGCAAGCAGAGTCTTCACAACTTCAGAGAAAAGAGAAGCTTTTGTAGACATCTTTATTCTATAGCTTTTCTGTATTCTAATAAGTTAAAACTCAATTTTGTATTTAATACATTTAGGAAAATCCATTGTTCAAAATTGAATCTAAACTCAAAATCTATAAACCAATTGATATTTTCCTAACATTATTGAAGTGACCACTTGGATTGGATTGGATTGGTATGGGTAGGA

mRNA sequence

CATCTCCGAACCCACAAACCTTCTCAATCTTTCCTTCAATGGCTTCTTCGACTCTCGTCCCCATTTCCTCTATttctcttcgttcttctccttcccaccgcctctcaattccactattcaagcctttccccctcctccactccactgtattcctactcccaatctcctcctcctcctcttcctccATTCTCTCTGCAACTCGGGCCAAATCCTCTGACATCGACACCACCTTCTTCGACAACGTCAATCCCCAAGAAGACATCGTTTACGACCCTCCCGAAGTCCCCGAAGGCTTCGTCCCTCCTCCCTCCTTCGATGAGGGCCCTATCGAAACCGAGGAAGAAATTGCCGCTGGTTACGAGGAGATCTATGGCCCCGCTTACAGTGGAGTCAGTGTTCTCGGAAACGACATTTATGTAATGGATTCTAAGGTCAAGAAAGCGGGCGGGTTCGGCTCCAAGGCCAAGAAGGACAAGCCGCGAGATGGGTTCGATGAGCGGGTTGTCCAAGTTCGGAGGGTTACTAAAGTGGTTAAAGGTGGGAAACAGTTACATTTTAGGGCAATTGTTGTTGTGGGTGATAAACAGGGCCAAGTGGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCACCGCTGTTCAGAAATCGGCAGTTAATGCTCGCCGGAACATTGTCACCGTTCCCATGACCAAGTATCTAACATTTCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCCGGTGTCGAGAATGCTTTAGGGAAGCAACTTGGAAGTAATAATGCCCTCAACAATGCTAGAGCAACAGTGGTCGCCGTGCAGAAGATGAAACAGTTTAGGGACGTTGCACAAGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGAAGAGGGAAATGTAATGGTGTCTGCAGAGACATTGAGCAAGCAGAGTCTTCACAACTTCAGAGAAAAGAGAAGCTTTTGTAGACATCTTTATTCTATAGCTTTTCTGTATTCTAATAAGTTAAAACTCAATTTTGTATTTAATACATTTAGGAAAATCCATTGTTCAAAATTGAATCTAAACTCAAAATCTATAAACCAATTGATATTTTCCTAACATTATTGAAGTGACCACTTGGATTGGATTGGATTGGTATGGGTAGGA

Coding sequence (CDS)

ATGGCTTCTTCGACTCTCGTCCCCATTTCCTCTATTTCTCTTCGTTCTTCTCCTTCCCACCGCCTCTCAATTCCACTATTCAAGCCTTTCCCCCTCCTCCACTCCACTGTATTCCTACTCCCAATCTCCTCCTCCTCCTCTTCCTCCATTCTCTCTGCAACTCGGGCCAAATCCTCTGACATCGACACCACCTTCTTCGACAACGTCAATCCCCAAGAAGACATCGTTTACGACCCTCCCGAAGTCCCCGAAGGCTTCGTCCCTCCTCCCTCCTTCGATGAGGGCCCTATCGAAACCGAGGAAGAAATTGCCGCTGGTTACGAGGAGATCTATGGCCCCGCTTACAGTGGAGTCAGTGTTCTCGGAAACGACATTTATGTAATGGATTCTAAGGTCAAGAAAGCGGGCGGGTTCGGCTCCAAGGCCAAGAAGGACAAGCCGCGAGATGGGTTCGATGAGCGGGTTGTCCAAGTTCGGAGGGTTACTAAAGTGGTTAAAGGTGGGAAACAGTTACATTTTAGGGCAATTGTTGTTGTGGGTGATAAACAGGGCCAAGTGGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCACCGCTGTTCAGAAATCGGCAGTTAATGCTCGCCGGAACATTGTCACCGTTCCCATGACCAAGTATCTAACATTTCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCCGGTGTCGAGAATGCTTTAGGGAAGCAACTTGGAAGTAATAATGCCCTCAACAATGCTAGAGCAACAGTGGTCGCCGTGCAGAAGATGAAACAGTTTAGGGACGTTGCACAAGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGA

Protein sequence

MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELWK*
Homology
[Close]
BLAST of Cucsa.046280 vs. Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 7.2e-116
Identity = 213/302 (70.53%), Postives = 248/302 (82.12%), Query Frame = 1 

Query: 16  SSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILS--ATRA--------KSSDIDTTF 75
           ++PS      L +  PL  +T  LL +SSSS    LS  +TR+        K  DID TF
Sbjct: 7   TTPSATSLTTLHRRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITF 66

Query: 76  FDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDI 135
           F+  NP E+I +DPPE PEG++PP + DE P E+EEEIA  YEE+YG AYSG S+LGND+
Sbjct: 67  FEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDV 126

Query: 136 YVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQ 195
           Y MDSK+KKA GFGSK+KK+K RDGF+E VVQVRRVTKVVKGGK + FRAIVVVGDK+GQ
Sbjct: 127 YAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQ 186

Query: 196 VGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTG 255
           VGVGVGKAKEV++AVQK+AV+ARRNI+TVPMTKYLTFPHR+E DYGAA+VMLRPA+PGTG
Sbjct: 187 VGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTG 246

Query: 256 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEEL 308
           VIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+QF DVA++RGIPMEEL
Sbjct: 247 VIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEEL 306

[Close]
BLAST of Cucsa.046280 vs. Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=2 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 9.8e-113
Identity = 217/309 (70.23%), Postives = 246/309 (79.61%), Query Frame = 1 

Query: 3   SSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISS--SSSSSILSATRAKSSD 62
           +S L  +SS+SL +  S  +S           ST  ++  SS  +   S L+  +A S+D
Sbjct: 4   ASALSSLSSLSLHTRTSSLISSS---------STKSIVSFSSFLNRRFSSLTLVKASSTD 63

Query: 63  IDTTFFDNVNPQ--EDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGV 122
            +T FF++  P+   ++V+DPP  PEGFV PP FDEG  ETEEEIA  +EE+YGPAYSG 
Sbjct: 64  TETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGE 123

Query: 123 SVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVV 182
           S+LG DIYVMDSK KK+ G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAIVV
Sbjct: 124 SMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVV 183

Query: 183 VGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLR 242
           VGDKQG VGVG  KAKEV+ AVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVMLR
Sbjct: 184 VGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLR 243

Query: 243 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQER 302
           PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFRDVAQER
Sbjct: 244 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQER 303

Query: 303 GIPMEELWK 308
           GIPMEELWK
Sbjct: 304 GIPMEELWK 303

[Close]
BLAST of Cucsa.046280 vs. Swiss-Prot
Match: RR5_PYRYE (30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.9e-50
Identity = 98/167 (58.68%), Postives = 135/167 (80.84%), Query Frame = 1 

Query: 141 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITA 200
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+V+G++QGQVGVGVGKA +VI A
Sbjct: 6   KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGA 65

Query: 201 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 260
           V+K   +A++++VTVP+TK  + PH   G  GAAKV+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 261 GVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 307
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172

[Close]
BLAST of Cucsa.046280 vs. Swiss-Prot
Match: RR5_PORPU (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-49
Identity = 98/167 (58.68%), Postives = 135/167 (80.84%), Query Frame = 1 

Query: 141 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITA 200
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+VVG++QGQVGVGVGKA +VI A
Sbjct: 6   KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGA 65

Query: 201 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 260
           V+K   +A++++VTVP+TK  + PH   G  GAA+V+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 261 GVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 307
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIENLY 172

[Close]
BLAST of Cucsa.046280 vs. Swiss-Prot
Match: RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-49
Identity = 97/178 (54.49%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 129 DSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGV 188
           + K KK        ++ +    + ERVVQ+RRVTKVVKGGK+L FRAIV+VG+++GQVGV
Sbjct: 3   EEKDKKQSSRRRNNRRTEKESEWQERVVQIRRVTKVVKGGKKLSFRAIVIVGNERGQVGV 62

Query: 189 GVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIA 248
           GVGKA +VI AV+K   + ++++V VP+T+  + PH S G+ GAA+V++RPA+PGTGVIA
Sbjct: 63  GVGKASDVIGAVRKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIA 122

Query: 249 GGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 307
           GGAVR VLE+AGV+N L K+LGS + LNNARA + A+  ++ F++VAQ R IP+E+L+
Sbjct: 123 GGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQLY 180

[Close]
BLAST of Cucsa.046280 vs. TrEMBL
Match: A0A0A0KK69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517420 PE=3 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 1.1e-168
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1 

Query: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD
Sbjct: 47  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 106

Query: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120
           IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV
Sbjct: 107 IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 166

Query: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 167 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 226

Query: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 227 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 286

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 287 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 346

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 347 PMEELWK 353

[Close]
BLAST of Cucsa.046280 vs. TrEMBL
Match: A9PH95_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04550g PE=2 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 3.1e-126
Identity = 239/314 (76.11%), Postives = 265/314 (84.39%), Query Frame = 1 

Query: 5   TLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSA----------- 64
           T V +SS+SL S+ + RLS    KP   LH     L +S S  SS LS            
Sbjct: 4   TTVTLSSLSLHSTTTPRLSF--IKPTSKLHP----LSLSISPKSSFLSPLSYHPKIITII 63

Query: 65  TRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGP 124
           T+A SSDIDT+FFDN+NP+E+ VYDPP  PE ++PPPSFDEGPIETEEEIAA YEE+YGP
Sbjct: 64  TKANSSDIDTSFFDNLNPEEEFVYDPPTPPEDYIPPPSFDEGPIETEEEIAAAYEELYGP 123

Query: 125 AYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHF 184
           AYSGVSVLG DIYVMDSKVKK  G+GS+ KK+K +DGFDERVVQVRRVTKVVKGGKQLHF
Sbjct: 124 AYSGVSVLGKDIYVMDSKVKKTSGWGSRVKKEKIKDGFDERVVQVRRVTKVVKGGKQLHF 183

Query: 185 RAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAA 244
           RA+V+VGDKQG+VGVGVGKAKEVI AVQKSA+NARRNI+TVPMTKYLTFPHRSEGD+GAA
Sbjct: 184 RAVVIVGDKQGRVGVGVGKAKEVIVAVQKSALNARRNIITVPMTKYLTFPHRSEGDFGAA 243

Query: 245 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRD 304
           KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQL S NALNNARATVVAVQKM+QF +
Sbjct: 244 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLRSKNALNNARATVVAVQKMRQFSE 303

Query: 305 VAQERGIPMEELWK 308
           VA+ERGIPMEELWK
Sbjct: 304 VARERGIPMEELWK 311

[Close]
BLAST of Cucsa.046280 vs. TrEMBL
Match: A0A0D2RDP8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G256400 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-125
Identity = 245/312 (78.53%), Postives = 267/312 (85.58%), Query Frame = 1 

Query: 1   MASSTL---VPISSISLRSS-PSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSAT-R 60
           MA++T    + +SS +LRS+ PS     P  KP           PIS   +   LS T +
Sbjct: 1   MAATTTAIALTLSSFTLRSTIPSKTFFFP--KPSK---------PISLRRTFRPLSLTPQ 60

Query: 61  AKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAY 120
           AKSSDIDT+FFD+VNP+EDIV+DPP  PEGF PPPSFDEGP ETE+EIAA YEE+YGPAY
Sbjct: 61  AKSSDIDTSFFDDVNPEEDIVFDPPTPPEGFTPPPSFDEGPEETEDEIAAAYEELYGPAY 120

Query: 121 SGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRA 180
           SGVSVLGND+YVMDSKVKK+  FG K KK+K RDGF+ERVVQVRRVTKVVKGGKQLHFRA
Sbjct: 121 SGVSVLGNDVYVMDSKVKKSSAFG-KVKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFRA 180

Query: 181 IVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKV 240
           IVVVGDKQGQVGVGVGKAKEVI AVQKSAVNARRNI+T+PMTKYLTFPHRSEGDYGAAKV
Sbjct: 181 IVVVGDKQGQVGVGVGKAKEVIGAVQKSAVNARRNIITIPMTKYLTFPHRSEGDYGAAKV 240

Query: 241 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVA 300
           MLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGS NALNNARATVVAVQKMKQFR+VA
Sbjct: 241 MLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSKNALNNARATVVAVQKMKQFREVA 300

Query: 301 QERGIPMEELWK 308
           QERGIPMEELWK
Sbjct: 301 QERGIPMEELWK 300

[Close]
BLAST of Cucsa.046280 vs. TrEMBL
Match: B9RBC3_RICCO (30S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_1674110 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 3.5e-125
Identity = 240/314 (76.43%), Postives = 268/314 (85.35%), Query Frame = 1 

Query: 1   MASSTLVP--ISSISLRSSPSHRLSI--PLF-KPFPLLHS--TVFLLPISSSSSSSILSA 60
           MA++T+    +SS+SL ++ + R S+  P+  KPF       T FL     S SS  ++ 
Sbjct: 1   MAATTITSSALSSLSLHTTSTPRFSLLKPIINKPFSSFSPRLTQFL-----SLSSQPITI 60

Query: 61  TRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGP 120
           T A SSDIDTTFFDN+NP++DIV+DPP  PE FVPPPSFDE P+ETEEEIAA YE++YG 
Sbjct: 61  TTASSSDIDTTFFDNLNPEDDIVFDPPTPPEDFVPPPSFDEEPMETEEEIAAAYEDLYGA 120

Query: 121 AYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHF 180
            YSGVS LGND+YVMDSKVKK  GFGSK K++K RDGF+ERVVQVRRVTKVVKGGKQLHF
Sbjct: 121 GYSGVSYLGNDVYVMDSKVKKTTGFGSKGKREKIRDGFEERVVQVRRVTKVVKGGKQLHF 180

Query: 181 RAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAA 240
           RAIVVVGDKQGQVGVGVGKAKEVI AVQKSAVNARRNI+TVPMTKYLTFPHRS+GDYGAA
Sbjct: 181 RAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPMTKYLTFPHRSDGDYGAA 240

Query: 241 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRD 300
           KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVVAVQKM+QF D
Sbjct: 241 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSKNALNNARATVVAVQKMRQFSD 300

Query: 301 VAQERGIPMEELWK 308
           VA+ERGIPMEELWK
Sbjct: 301 VARERGIPMEELWK 309

[Close]
BLAST of Cucsa.046280 vs. TrEMBL
Match: A0A0B0PT69_GOSAR (30S ribosomal S5, chloroplastic-like protein OS=Gossypium arboreum GN=F383_11522 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 7.8e-125
Identity = 232/268 (86.57%), Postives = 248/268 (92.54%), Query Frame = 1 

Query: 41  PISSSSSSSILSAT-RAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIET 100
           PIS   +   LS T +AKSSDIDT+FFD+VNP+EDIV+DPP  PEGF PPPSFDEGP ET
Sbjct: 34  PISLRRTFRPLSLTPQAKSSDIDTSFFDDVNPEEDIVFDPPTPPEGFTPPPSFDEGPEET 93

Query: 101 EEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVR 160
           E+EIAA YEE+YGPAYSGVSVLGND+YVMDSKVKK+  FG K KK+K RDGF+ERVVQVR
Sbjct: 94  EDEIAAAYEELYGPAYSGVSVLGNDVYVMDSKVKKSSAFG-KVKKEKVRDGFEERVVQVR 153

Query: 161 RVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKY 220
           RVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVI AVQKSAVNARRNI+T+PMTKY
Sbjct: 154 RVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIGAVQKSAVNARRNIITIPMTKY 213

Query: 221 LTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNAR 280
           LTFPHRSEGDYGAAKVMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGS NALNNAR
Sbjct: 214 LTFPHRSEGDYGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSKNALNNAR 273

Query: 281 ATVVAVQKMKQFRDVAQERGIPMEELWK 308
           ATVVAVQKMKQFR+VAQERGIPMEELWK
Sbjct: 274 ATVVAVQKMKQFREVAQERGIPMEELWK 300

[Close]
BLAST of Cucsa.046280 vs. TAIR10
Match: AT2G33800.1 (AT2G33800.1 Ribosomal protein S5 family protein)

HSP 1 Score: 407.9 bits (1047), Expect = 5.5e-114
Identity = 217/309 (70.23%), Postives = 246/309 (79.61%), Query Frame = 1 

Query: 3   SSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISS--SSSSSILSATRAKSSD 62
           +S L  +SS+SL +  S  +S           ST  ++  SS  +   S L+  +A S+D
Sbjct: 4   ASALSSLSSLSLHTRTSSLISSS---------STKSIVSFSSFLNRRFSSLTLVKASSTD 63

Query: 63  IDTTFFDNVNPQ--EDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGV 122
            +T FF++  P+   ++V+DPP  PEGFV PP FDEG  ETEEEIA  +EE+YGPAYSG 
Sbjct: 64  TETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGE 123

Query: 123 SVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVV 182
           S+LG DIYVMDSK KK+ G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAIVV
Sbjct: 124 SMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVV 183

Query: 183 VGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLR 242
           VGDKQG VGVG  KAKEV+ AVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVMLR
Sbjct: 184 VGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLR 243

Query: 243 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQER 302
           PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFRDVAQER
Sbjct: 244 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQER 303

Query: 303 GIPMEELWK 308
           GIPMEELWK
Sbjct: 304 GIPMEELWK 303

[Close]
BLAST of Cucsa.046280 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein)

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-18
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = 1 

Query: 143 KKDKP--RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAV 202
           KK +P  R G+D  V+ V++V KV KGG+   + A++V G+ +G +G    KA+   +A+
Sbjct: 348 KKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAM 407

Query: 203 QKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 262
           QK+     +N+  V   +  T  H  +  Y   K+ L PA   TG+ AG  V+ +L +AG
Sbjct: 408 QKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAG 467

Query: 263 VENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERG 300
            +N   K +GS N+ N  +A + A+  ++  +DV ++ G
Sbjct: 468 FKNIKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFG 506

[Close]
BLAST of Cucsa.046280 vs. TAIR10
Match: AT1G58983.1 (AT1G58983.1 Ribosomal protein S5 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Cucsa.046280 vs. TAIR10
Match: AT1G59359.1 (AT1G59359.1 Ribosomal protein S5 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Cucsa.046280 vs. TAIR10
Match: AT1G58380.1 (AT1G58380.1 Ribosomal protein S5 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Cucsa.046280 vs. NCBI nr
Match: gi|449433828|ref|XP_004134699.1| (PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis sativus])

HSP 1 Score: 600.5 bits (1547), Expect = 1.6e-168
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1 

Query: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120
           IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120

Query: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]
BLAST of Cucsa.046280 vs. NCBI nr
Match: gi|700194030|gb|KGN49234.1| (hypothetical protein Csa_6G517420 [Cucumis sativus])

HSP 1 Score: 600.5 bits (1547), Expect = 1.6e-168
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1 

Query: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD
Sbjct: 47  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 106

Query: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120
           IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV
Sbjct: 107 IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 166

Query: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 167 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 226

Query: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 227 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 286

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 287 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 346

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 347 PMEELWK 353

[Close]
BLAST of Cucsa.046280 vs. NCBI nr
Match: gi|659078667|ref|XP_008439845.1| (PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo])

HSP 1 Score: 577.0 bits (1486), Expect = 1.9e-161
Identity = 295/307 (96.09%), Postives = 299/307 (97.39%), Query Frame = 1 

Query: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHS V +L ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120
            DTTFFDNVNP EDI +DPPEVPEGFVPPPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSKVKKAGGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]
BLAST of Cucsa.046280 vs. NCBI nr
Match: gi|1009109570|ref|XP_015890887.1| (PREDICTED: 30S ribosomal protein S5, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 476.5 bits (1225), Expect = 3.6e-131
Identity = 248/309 (80.26%), Postives = 270/309 (87.38%), Query Frame = 1 

Query: 2   ASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTV---FLLPISSSSSSSILSATRAKS 61
           AS+TL  +SS+SL S    RLS+          +T+     LP  SSSSS      RA+ 
Sbjct: 7   ASATLSSLSSLSLHSI--RRLSLLPTTTTTTTTTTIKAFSFLPSLSSSSSRPTIILRARP 66

Query: 62  SDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGV 121
           SDIDT+FFDNV+P+ED+ +DPPE+PEGFV PPSFDEGP+ETE+EIAA YEE+YGPAYSGV
Sbjct: 67  SDIDTSFFDNVDPEEDVAFDPPEIPEGFVSPPSFDEGPMETEDEIAAAYEELYGPAYSGV 126

Query: 122 SVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVV 181
           SVLGNDIYVMDSKVKK GGFGSK KK+K RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVV
Sbjct: 127 SVLGNDIYVMDSKVKKTGGFGSKVKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFRAIVV 186

Query: 182 VGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLR 241
           VGDKQGQVGVGVGKAKEVI AVQKSAVNARRNI+TVPMTKYLTFPHRSEGDYGAAKVMLR
Sbjct: 187 VGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLR 246

Query: 242 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQER 301
           PASPGTGVIAGGAVRIVLEMAGVENALGKQLGS NALNNARATVVAVQ+M+QFRDVA+ER
Sbjct: 247 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSKNALNNARATVVAVQQMRQFRDVARER 306

Query: 302 GIPMEELWK 308
           GIPMEELWK
Sbjct: 307 GIPMEELWK 313

[Close]
BLAST of Cucsa.046280 vs. NCBI nr
Match: gi|224077096|ref|XP_002305129.1| (hypothetical protein POPTR_0004s04550g [Populus trichocarpa])

HSP 1 Score: 459.5 bits (1181), Expect = 4.5e-126
Identity = 239/314 (76.11%), Postives = 265/314 (84.39%), Query Frame = 1 

Query: 5   TLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSA----------- 64
           T V +SS+SL S+ + RLS    KP   LH     L +S S  SS LS            
Sbjct: 4   TTVTLSSLSLHSTTTPRLSF--IKPTSKLHP----LSLSISPKSSFLSPLSYHPKIITII 63

Query: 65  TRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGP 124
           T+A SSDIDT+FFDN+NP+E+ VYDPP  PE ++PPPSFDEGPIETEEEIAA YEE+YGP
Sbjct: 64  TKANSSDIDTSFFDNLNPEEEFVYDPPTPPEDYIPPPSFDEGPIETEEEIAAAYEELYGP 123

Query: 125 AYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHF 184
           AYSGVSVLG DIYVMDSKVKK  G+GS+ KK+K +DGFDERVVQVRRVTKVVKGGKQLHF
Sbjct: 124 AYSGVSVLGKDIYVMDSKVKKTSGWGSRVKKEKIKDGFDERVVQVRRVTKVVKGGKQLHF 183

Query: 185 RAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAA 244
           RA+V+VGDKQG+VGVGVGKAKEVI AVQKSA+NARRNI+TVPMTKYLTFPHRSEGD+GAA
Sbjct: 184 RAVVIVGDKQGRVGVGVGKAKEVIVAVQKSALNARRNIITVPMTKYLTFPHRSEGDFGAA 243

Query: 245 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRD 304
           KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQL S NALNNARATVVAVQKM+QF +
Sbjct: 244 KVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLRSKNALNNARATVVAVQKMRQFSE 303

Query: 305 VAQERGIPMEELWK 308
           VA+ERGIPMEELWK
Sbjct: 304 VARERGIPMEELWK 311

The following BLAST results are available for this feature:
BLAST of Cucsa.046280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR5_SPIOL7.2e-11670.5330S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1[more]
RR5_ARATH9.8e-11370.2330S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=2 SV=... [more]
RR5_PYRYE6.9e-5058.6830S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis GN=rps5 PE=3 SV=1[more]
RR5_PORPU2.0e-4958.6830S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1[more]
RS5_SYNE74.5e-4954.4930S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE... [more]
BLAST of Cucsa.046280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK69_CUCSA1.1e-168100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517420 PE=3 SV=1[more]
A9PH95_POPTR3.1e-12676.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04550g PE=2 SV=1[more]
A0A0D2RDP8_GOSRA2.7e-12578.53Uncharacterized protein OS=Gossypium raimondii GN=B456_010G256400 PE=3 SV=1[more]
B9RBC3_RICCO3.5e-12576.4330S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_1674110 PE=3 SV=1[more]
A0A0B0PT69_GOSAR7.8e-12586.5730S ribosomal S5, chloroplastic-like protein OS=Gossypium arboreum GN=F383_11522... [more]
BLAST of Cucsa.046280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33800.15.5e-11470.23 Ribosomal protein S5 family protein[more]
AT1G64880.15.7e-1832.70 Ribosomal protein S5 family protein[more]
AT1G58983.11.0e-1432.65 Ribosomal protein S5 family protein[more]
AT1G59359.11.0e-1432.65 Ribosomal protein S5 family protein[more]
AT1G58380.11.0e-1432.65 Ribosomal protein S5 family protein[more]
BLAST of Cucsa.046280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433828|ref|XP_004134699.1|1.6e-168100.00PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis sativus][more]
gi|700194030|gb|KGN49234.1|1.6e-168100.00hypothetical protein Csa_6G517420 [Cucumis sativus][more]
gi|659078667|ref|XP_008439845.1|1.9e-16196.09PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo][more]
gi|1009109570|ref|XP_015890887.1|3.6e-13180.26PREDICTED: 30S ribosomal protein S5, chloroplastic [Ziziphus jujuba][more]
gi|224077096|ref|XP_002305129.1|4.5e-12676.11hypothetical protein POPTR_0004s04550g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000851Ribosomal_S5
IPR005324Ribosomal_S5_C
IPR005712Ribosomal_S5_bac-type
IPR013810Ribosomal_S5_N
IPR014720dsRBD_dom
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR018192Ribosomal_S5_N_CS
IPR020568Ribosomal_S5_D2-typ_fold
IPR000851Ribosomal_S5
IPR005324Ribosomal_S5_C
IPR005712Ribosomal_S5_bac-type
IPR013810Ribosomal_S5_N
IPR014720dsRBD_dom
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR018192Ribosomal_S5_N_CS
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.046280.2Cucsa.046280.2mRNA
Cucsa.046280.1Cucsa.046280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 126..307
score: 1.2
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 228..298
score: 2.7
IPR005712Ribosomal protein S5, bacterial-typeHAMAPMF_01307_BRibosomal_S5_Bcoord: 128..304
score: 32
IPR005712Ribosomal protein S5, bacterial-typeTIGRFAMsTIGR01021TIGR01021coord: 150..304
score: 3.4
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 151..215
score: 7.1
IPR013810Ribosomal protein S5, N-terminalPROFILEPS50881S5_DSRBDcoord: 151..214
score: 2
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 149..212
score: 2.7
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 218..299
score: 2.7
IPR018192Ribosomal protein S5, N-terminal, conserved sitePROSITEPS00585RIBOSOMAL_S5coord: 168..200
scor
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 221..299
score: 8.6
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 148..216
score: 1.99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.046280Cla009625Watermelon (97103) v1cgywmB026
Cucsa.046280Csa6G517420Cucumber (Chinese Long) v2cgycuB027
Cucsa.046280MELO3C007277Melon (DHL92) v3.5.1cgymeB027
Cucsa.046280ClCG01G023060Watermelon (Charleston Gray)cgywcgB022
Cucsa.046280CSPI06G34690Wild cucumber (PI 183967)cgycpiB028
Cucsa.046280CmaCh03G012720Cucurbita maxima (Rimu)cgycmaB0045
Cucsa.046280CmaCh07G002360Cucurbita maxima (Rimu)cgycmaB0048
Cucsa.046280CmoCh07G002330Cucurbita moschata (Rifu)cgycmoB0043
Cucsa.046280CmoCh03G012670Cucurbita moschata (Rifu)cgycmoB0040
Cucsa.046280Lsi01G003080Bottle gourd (USVL1VR-Ls)cgylsiB022
Cucsa.046280Cp4.1LG10g04980Cucurbita pepo (Zucchini)cgycpeB0034
Cucsa.046280Cp4.1LG19g07170Cucurbita pepo (Zucchini)cgycpeB0039
Cucsa.046280MELO3C007277.2Melon (DHL92) v3.6.1cgymedB025
Cucsa.046280CsaV3_6G050190Cucumber (Chinese Long) v3cgycucB028
Cucsa.046280Cla97C01G022950Watermelon (97103) v2cgywmbB017
Cucsa.046280Bhi03G000309Wax gourdcgywgoB026
Cucsa.046280Carg15298Silver-seed gourdcarcgyB0623
Cucsa.046280Carg07778Silver-seed gourdcarcgyB0714
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.046280Melon (DHL92) v3.6.1cgymedB019
Cucsa.046280Silver-seed gourdcarcgyB0028
Cucsa.046280Silver-seed gourdcarcgyB0180
Cucsa.046280Silver-seed gourdcarcgyB0206
Cucsa.046280Silver-seed gourdcarcgyB1067
Cucsa.046280Cucumber (Chinese Long) v3cgycucB018
Cucsa.046280Cucumber (Chinese Long) v3cgycucB027
Cucsa.046280Watermelon (97103) v2cgywmbB024
Cucsa.046280Watermelon (97103) v2cgywmbB020
Cucsa.046280Wax gourdcgywgoB032
Cucsa.046280Cucumber (Gy14) v1cgycgyB003
Cucsa.046280Cucumber (Gy14) v1cgycgyB004
Cucsa.046280Cucurbita maxima (Rimu)cgycmaB0043
Cucsa.046280Cucurbita maxima (Rimu)cgycmaB0035
Cucsa.046280Cucurbita maxima (Rimu)cgycmaB0037
Cucsa.046280Cucurbita moschata (Rifu)cgycmoB0033
Cucsa.046280Cucurbita moschata (Rifu)cgycmoB0034
Cucsa.046280Cucurbita moschata (Rifu)cgycmoB0038
Cucsa.046280Wild cucumber (PI 183967)cgycpiB016
Cucsa.046280Wild cucumber (PI 183967)cgycpiB027
Cucsa.046280Cucumber (Chinese Long) v2cgycuB015
Cucsa.046280Cucumber (Chinese Long) v2cgycuB026
Cucsa.046280Melon (DHL92) v3.5.1cgymeB019
Cucsa.046280Watermelon (Charleston Gray)cgywcgB021
Cucsa.046280Watermelon (Charleston Gray)cgywcgB027
Cucsa.046280Watermelon (97103) v1cgywmB022
Cucsa.046280Watermelon (97103) v1cgywmB029
Cucsa.046280Cucurbita pepo (Zucchini)cgycpeB0032
Cucsa.046280Cucurbita pepo (Zucchini)cgycpeB0040
Cucsa.046280Cucurbita pepo (Zucchini)cgycpeB0043
Cucsa.046280Cucurbita pepo (Zucchini)cgycpeB0044
Cucsa.046280Bottle gourd (USVL1VR-Ls)cgylsiB023