Carg07778 (gene) Silver-seed gourd

Overview
NameCarg07778
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description30S ribosomal protein S5
LocationCucurbita_argyrosperma_scaffold_066 : 157315 .. 159063 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCAACTCTCGTCCCCATTTCCTTTCATTTTGTACGCTCTTCTCCCTTTCATCGTCTTCCAATTCCTCAATTGAAGCCTTTCTCCGGCGTCCACTCCGCCCTATCCGTAGCCCCAATTTCCTCCTCGATTCTCTCTGCAACTCGTGTCAAATCCTCAGACATTGATACTACCTTCTTTGATACCTTCAATCCCGATGAAGATTTTGTCTACGACCCTCCTGAAGTCCCGGAAGGCTTTGTCGCGCCTCCCTCCTTCGACGAGGGCCCATTAGAATCTGAGGACGAAATTGCCGCCGCTTACGAGGAGCTCTATGGCCCCGCTTACAGTGGAGTTAGTGTTCTGGGAAATGATATTTATGTAATGGATTCTAAGATGAAGAAATTGGGCGGATTCGGCTCAAAGATCAAGAAGGACAAGCTGCGGGATGGGTTCGAAGAGCGGGTTGTGCAAGTTCGGAGGGTCACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTCGGTGATAAAAAGGGGCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCTCCGCTGTCCAGAAATCGGCGATCAATGCTCGCCGGAATATCGTCACTGTCCCCATGACCAAGTACCTCACATTCCCCCACAGGTCCGTGACTTTGTCTTCGAATTGTAAAATTCCAATACCACTGAATTTGATACTAATAGAGGCTTCTGTAGTAGCTTTATTGTCATGCTTTAGTTGCTGATAATGGGAATGCGTTCAATTAGGAATATGGGATTTAAGGAAGAGTAGAATTGGATGATTATTGCTTATACTGGTCTATAGAACACCTTAGTTCAACTATAATCCTTACTTCGATAGTTCAATGACTTTGTTTGAAGTTATTTAATACCCCAATCCTGTAGTGTGCAGGCAGGTTGAACTTCGAATCCTTATTGAAAGTTGGTGTTTTGAGTTATTTGTTGGTTCTGTAGCTGCATTTTGCTTATATTGAGTTGTTGTTTGTAATTGACAAGGCATGTTTCCCAGTTTAGTCTAGAGTCCTACAGTTCAATTTAGTCAATTAGAGTATGCAGAACTTGTCTTTTTTCGATCGAGCGATCGAGCTTCCAGTGTTCGATCTGCAGCTGCAAGAATTAGTACCTAAAAAGCACCATGAGAATGAGAGATATATATAGAATGCTTTCATTTTAGATGCAAATATACAGAGTAAGGGCATGCTTTTTAGAGTGATTTTGTTAAAATCACTTTTGACATGTCCAAAATCATTTCGGAACGTATAGCAGTTTCTAGGAAGCGAGAAGCTAAAGCAAACAAACTCGACTTCAGCCAAGAAATTGTAGTTTGAAACTCAATTTTCCCACAAGTAACAGAAGCTTCAAATTATGAATCCTATATTAAAGTAGTATTTCAGTTGTATTCACATGTTGGGTTACCCTGTTTTACTGCAAATGTTGGCTAAGGAGAATGAAGAAATTGTAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGGCCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGCGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAAATTGGAAGTAACAATGCCCTCAACAACGCCAGAGCAACAGTGGTCGCCGTTCAGAAGATGAAACAGTTTCGGGAGGTTGCACAGGAGCGAGGTATCCCCATGGAAGAGTTGTGGAAGTGA

mRNA sequence

ATGGCTTCTTCAACTCTCGTCCCCATTTCCTTTCATTTTGTACGCTCTTCTCCCTTTCATCGTCTTCCAATTCCTCAATTGAAGCCTTTCTCCGGCGTCCACTCCGCCCTATCCGTAGCCCCAATTTCCTCCTCGATTCTCTCTGCAACTCGTGTCAAATCCTCAGACATTGATACTACCTTCTTTGATACCTTCAATCCCGATGAAGATTTTGTCTACGACCCTCCTGAAGTCCCGGAAGGCTTTGTCGCGCCTCCCTCCTTCGACGAGGGCCCATTAGAATCTGAGGACGAAATTGCCGCCGCTTACGAGGAGCTCTATGGCCCCGCTTACAGTGGAGTTAGTGTTCTGGGAAATGATATTTATGTAATGGATTCTAAGATGAAGAAATTGGGCGGATTCGGCTCAAAGATCAAGAAGGACAAGCTGCGGGATGGGTTCGAAGAGCGGGTTGTGCAAGTTCGGAGGGTCACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTCGGTGATAAAAAGGGGCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCTCCGCTGTCCAGAAATCGGCGATCAATGCTCGCCGGAATATCGTCACTGTCCCCATGACCAAGTACCTCACATTCCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGGCCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGCGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAAATTGGAAGTAACAATGCCCTCAACAACGCCAGAGCAACAGTGGTCGCCGTTCAGAAGATGAAACAGTTTCGGGAGGTTGCACAGGAGCGAGGTATCCCCATGGAAGAGTTGTGGAAGTGA

Coding sequence (CDS)

ATGGCTTCTTCAACTCTCGTCCCCATTTCCTTTCATTTTGTACGCTCTTCTCCCTTTCATCGTCTTCCAATTCCTCAATTGAAGCCTTTCTCCGGCGTCCACTCCGCCCTATCCGTAGCCCCAATTTCCTCCTCGATTCTCTCTGCAACTCGTGTCAAATCCTCAGACATTGATACTACCTTCTTTGATACCTTCAATCCCGATGAAGATTTTGTCTACGACCCTCCTGAAGTCCCGGAAGGCTTTGTCGCGCCTCCCTCCTTCGACGAGGGCCCATTAGAATCTGAGGACGAAATTGCCGCCGCTTACGAGGAGCTCTATGGCCCCGCTTACAGTGGAGTTAGTGTTCTGGGAAATGATATTTATGTAATGGATTCTAAGATGAAGAAATTGGGCGGATTCGGCTCAAAGATCAAGAAGGACAAGCTGCGGGATGGGTTCGAAGAGCGGGTTGTGCAAGTTCGGAGGGTCACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTCGGTGATAAAAAGGGGCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCTCCGCTGTCCAGAAATCGGCGATCAATGCTCGCCGGAATATCGTCACTGTCCCCATGACCAAGTACCTCACATTCCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGGCCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGCGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAAATTGGAAGTAACAATGCCCTCAACAACGCCAGAGCAACAGTGGTCGCCGTTCAGAAGATGAAACAGTTTCGGGAGGTTGCACAGGAGCGAGGTATCCCCATGGAAGAGTTGTGGAAGTGA

Protein sequence

MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELWK
Homology
[Close]
BLAST of Carg07778 vs. NCBI nr
Match: XP_022926879.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita moschata] >XP_022926880.1 30S ribosomal protein S5, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 580.1 bits (1494), Expect = 4.4e-162
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT 60
           MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT
Sbjct: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT 60

Query: 61  FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120
           FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND
Sbjct: 61  FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120

Query: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180
           IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG
Sbjct: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180

Query: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240
           QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT
Sbjct: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240

Query: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEE 300
           GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEE
Sbjct: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEE 300

Query: 301 LWK 304
           LWK
Sbjct: 301 LWK 303

[Close]
BLAST of Carg07778 vs. NCBI nr
Match: XP_023518483.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023518484.1 30S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 576.2 bits (1484), Expect = 6.3e-161
Identity = 300/303 (99.01%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT 60
           MASSTLVPI+FHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRV+SSDIDTT
Sbjct: 1   MASSTLVPIAFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVRSSDIDTT 60

Query: 61  FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120
           FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND
Sbjct: 61  FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120

Query: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180
           IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG
Sbjct: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180

Query: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240
           QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT
Sbjct: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240

Query: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEE 300
           GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVA+ERGIPMEE
Sbjct: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVARERGIPMEE 300

Query: 301 LWK 304
           LWK
Sbjct: 301 LWK 303

[Close]
BLAST of Carg07778 vs. NCBI nr
Match: XP_023003349.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita maxima] >XP_023003350.1 30S ribosomal protein S5, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 573.2 bits (1476), Expect = 5.4e-160
Identity = 300/303 (99.01%), Postives = 301/303 (99.34%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT 60
           MASSTLVPISFHFVRSS FHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT
Sbjct: 1   MASSTLVPISFHFVRSSSFHRLPIPQLKPFSGVHSALSVAPISSSILSATRVKSSDIDTT 60

Query: 61  FFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120
           F DTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND
Sbjct: 61  FLDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGND 120

Query: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180
           IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG
Sbjct: 121 IYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKG 180

Query: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240
           QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT
Sbjct: 181 QVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGT 240

Query: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEE 300
           GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVA+ERGIPMEE
Sbjct: 241 GVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVARERGIPMEE 300

Query: 301 LWK 304
           LWK
Sbjct: 301 LWK 303

[Close]
BLAST of Carg07778 vs. NCBI nr
Match: XP_022142374.1 (30S ribosomal protein S5, chloroplastic [Momordica charantia])

HSP 1 Score: 513.1 bits (1320), Expect = 6.6e-142
Identity = 270/304 (88.82%), Postives = 287/304 (94.41%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPI-SSSILSATRVKSSDIDT 60
           MASSTLVPIS   +RSSP HRLPI  LKPF+ +HSALS+API SSSIL+  R KSSDIDT
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPISSSSILAPIRAKSSDIDT 60

Query: 61  TFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFD   P++D VYDPPEVPEGFVAPPSFDEGPLE+E+EIAAAYEE+YGPAYSGVSVLGN
Sbjct: 61  TFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DI+VMDSK+KK+GGFGSK KKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDK+
Sbjct: 121 DIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQ 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSA+NARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATV AVQKMKQFREVAQERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGIPME 300

Query: 301 ELWK 304
           ELWK
Sbjct: 301 ELWK 304

[Close]
BLAST of Carg07778 vs. NCBI nr
Match: XP_023544602.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.5 bits (1316), Expect = 1.9e-141
Identity = 270/304 (88.82%), Postives = 286/304 (94.08%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPI-SSSILSATRVKSSDIDT 60
           MASS +VPIS   +RSSP + LPIP LKPF+ +HSA+SV PI SSSILSA R K SDIDT
Sbjct: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTLLHSAVSVPPISSSSILSAARAKPSDIDT 60

Query: 61  TFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFF++ NP+ED VYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFESINPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKK+GGFGSK +K+K RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATVVAV KMKQFR+VA+ERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 304
           ELWK
Sbjct: 301 ELWK 304

[Close]
BLAST of Carg07778 vs. TAIR10
Match: AT2G33800.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 385.6 bits (989), Expect = 2.9e-107
Identity = 203/261 (77.78%), Postives = 226/261 (86.59%), Query Frame = 0 

Query: 45  SILSATRVKSSDIDTTFFDTFNPD--EDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAA 104
           S L+  +  S+D +T FF+   P+   + V+DPP  PEGFV+PP FDEG  E+E+EIA A
Sbjct: 43  SSLTLVKASSTDTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATA 102

Query: 105 YEELYGPAYSGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVK 164
           +EELYGPAYSG S+LG DIYVMDSK KK  G G K KKDK+RDGFEERVVQVRRVTKVVK
Sbjct: 103 FEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVK 162

Query: 165 GGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRS 224
           GGKQL FRAIVVVGDK+G VGVG  KAKEV++AVQKSAI+ARRNIV VPMTKY TFPHRS
Sbjct: 163 GGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRS 222

Query: 225 EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQ 284
           EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARAT+ AVQ
Sbjct: 223 EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQ 282

Query: 285 KMKQFREVAQERGIPMEELWK 304
           +M+QFR+VAQERGIPMEELWK
Sbjct: 283 QMRQFRDVAQERGIPMEELWK 303

[Close]
BLAST of Carg07778 vs. TAIR10
Match: AT1G64880.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 9.8e-15
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 0 

Query: 137 KIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAV 196
           K ++   R G++  V+ V++V KV KGG+   + A++V G+ +G +G    KA+   SA+
Sbjct: 348 KKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAM 407

Query: 197 QKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 256
           QK+     +N+  V   +  T  H  +  Y   K+ L PA   TG+ AG  V+ +L +AG
Sbjct: 408 QKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAG 467

Query: 257 VENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERG 296
            +N   K IGS N+ N  +A + A+  ++  ++V ++ G
Sbjct: 468 FKNIKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFG 506

[Close]
BLAST of Carg07778 vs. TAIR10
Match: AT1G58983.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-12
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 148 EERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNI 207
           ++ V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++
Sbjct: 96  KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSV 155

Query: 208 VTV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENA 267
           V V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++ 
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDV 215

Query: 268 LGKQIGSNNALNN-ARATVVAVQKMKQF 288
                GS   L N  +AT   +QK   F
Sbjct: 216 FTSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Carg07778 vs. TAIR10
Match: AT1G59359.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-12
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 148 EERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNI 207
           ++ V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++
Sbjct: 96  KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSV 155

Query: 208 VTV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENA 267
           V V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++ 
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDV 215

Query: 268 LGKQIGSNNALNN-ARATVVAVQKMKQF 288
                GS   L N  +AT   +QK   F
Sbjct: 216 FTSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Carg07778 vs. TAIR10
Match: AT1G58380.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-12
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 148 EERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNI 207
           ++ V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++
Sbjct: 96  KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSV 155

Query: 208 VTV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENA 267
           V V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++ 
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDV 215

Query: 268 LGKQIGSNNALNN-ARATVVAVQKMKQF 288
                GS   L N  +AT   +QK   F
Sbjct: 216 FTSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]
BLAST of Carg07778 vs. Swiss-Prot
Match: sp|Q9ST69|RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.9e-108
Identity = 197/252 (78.17%), Postives = 225/252 (89.29%), Query Frame = 0 

Query: 52  VKSSDIDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAY 111
           +K  DID TFF+  NPDE+  +DPPE PEG++ P + DE P ESE+EIA AYEELYG AY
Sbjct: 57  IKKDDIDITFFEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAY 116

Query: 112 SGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRA 171
           SG S+LGND+Y MDSK+KK  GFGSK KK+K+RDGFEE VVQVRRVTKVVKGGK + FRA
Sbjct: 117 SGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRA 176

Query: 172 IVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKV 231
           IVVVGDKKGQVGVGVGKAKEV+SAVQK+A++ARRNI+TVPMTKYLTFPHR+E DYGAA+V
Sbjct: 177 IVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARV 236

Query: 232 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVA 291
           MLRPA+PGTGVIAGGAVR VLEMAGVENALGKQ+GSNNALNNARAT+VAVQ M+QF +VA
Sbjct: 237 MLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVA 296

Query: 292 QERGIPMEELWK 304
           ++RGIPMEELWK
Sbjct: 297 RDRGIPMEELWK 308

[Close]
BLAST of Carg07778 vs. Swiss-Prot
Match: sp|P93014|RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 5.2e-106
Identity = 203/261 (77.78%), Postives = 226/261 (86.59%), Query Frame = 0 

Query: 45  SILSATRVKSSDIDTTFFDTFNPD--EDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAA 104
           S L+  +  S+D +T FF+   P+   + V+DPP  PEGFV+PP FDEG  E+E+EIA A
Sbjct: 43  SSLTLVKASSTDTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATA 102

Query: 105 YEELYGPAYSGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVK 164
           +EELYGPAYSG S+LG DIYVMDSK KK  G G K KKDK+RDGFEERVVQVRRVTKVVK
Sbjct: 103 FEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVK 162

Query: 165 GGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRS 224
           GGKQL FRAIVVVGDK+G VGVG  KAKEV++AVQKSAI+ARRNIV VPMTKY TFPHRS
Sbjct: 163 GGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRS 222

Query: 225 EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQ 284
           EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARAT+ AVQ
Sbjct: 223 EGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQ 282

Query: 285 KMKQFREVAQERGIPMEELWK 304
           +M+QFR+VAQERGIPMEELWK
Sbjct: 283 QMRQFRDVAQERGIPMEELWK 303

[Close]
BLAST of Carg07778 vs. Swiss-Prot
Match: sp|Q1XDJ0|RR5_PYRYE (30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.1e-47
Identity = 98/167 (58.68%), Postives = 135/167 (80.84%), Query Frame = 0 

Query: 137 KIKKDKLRD-GFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISA 196
           K  K K +D G+EERVVQV+RVTKVVKGGK+L FR I+V+G+++GQVGVGVGKA +VI A
Sbjct: 6   KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGA 65

Query: 197 VQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 256
           V+K   +A++++VTVP+TK  + PH   G  GAAKV+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 257 GVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 303
           GV+N L KQ+GSNN LNNARA +  + +++ F E A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172

[Close]
BLAST of Carg07778 vs. Swiss-Prot
Match: sp|B1WQS7|RS5_CYAA5 (30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) OX=43989 GN=rpsE PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.1e-47
Identity = 98/167 (58.68%), Postives = 134/167 (80.24%), Query Frame = 0 

Query: 137 KIKKDKLRD-GFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISA 196
           K  +DK +D  ++ERV+Q+RRV+KVVKGGK+L FRAIVVVG++KGQVGVGVGKA +VI A
Sbjct: 6   KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGA 65

Query: 197 VQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 256
           V+K   + ++ ++ V +TK  +  H ++G  G AKV++RPA+PGTGVIAGGAVR VLE+A
Sbjct: 66  VRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELA 125

Query: 257 GVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 303
           G++N L KQ+GSNN LNNARA + A++ ++ F EVAQERG+P+E L+
Sbjct: 126 GLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPLEHLY 172

[Close]
BLAST of Carg07778 vs. Swiss-Prot
Match: sp|Q31L23|RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=rpsE PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 9.3e-47
Identity = 94/156 (60.26%), Postives = 130/156 (83.33%), Query Frame = 0 

Query: 147 FEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRN 206
           ++ERVVQ+RRVTKVVKGGK+L FRAIV+VG+++GQVGVGVGKA +VI AV+K   + +++
Sbjct: 25  WQERVVQIRRVTKVVKGGKKLSFRAIVIVGNERGQVGVGVGKASDVIGAVRKGVADGKKH 84

Query: 207 IVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIG 266
           +V VP+T+  + PH S G+ GAA+V++RPA+PGTGVIAGGAVR VLE+AGV+N L K++G
Sbjct: 85  LVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLG 144

Query: 267 SNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 303
           S + LNNARA + A+  ++ F+EVAQ R IP+E+L+
Sbjct: 145 SKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQLY 180

[Close]
BLAST of Carg07778 vs. TrEMBL
Match: tr|A0A0A0KK69|A0A0A0KK69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 1.5e-139
Identity = 266/307 (86.64%), Postives = 281/307 (91.53%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPI----SSSILSATRVKSSD 60
           MASSTLVPIS   +RSSP HRL IP  KPF  +HS + + PI    SSSILSATR KSSD
Sbjct: 47  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 106

Query: 61  IDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120
           IDTTFFD  NP ED VYDPPEVPEGFV PPSFDEGP+E+E+EIAA YEE+YGPAYSGVSV
Sbjct: 107 IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 166

Query: 121 LGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSK+KK GGFGSK KKDK RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 167 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 226

Query: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 227 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 286

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 287 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 346

Query: 301 PMEELWK 304
           PMEELWK
Sbjct: 347 PMEELWK 353

[Close]
BLAST of Carg07778 vs. TrEMBL
Match: tr|A0A1S3AZA3|A0A1S3AZA3_CUCME (30S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 PE=3 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 1.8e-132
Identity = 255/307 (83.06%), Postives = 271/307 (88.27%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPI----SSSILSATRVKSSD 60
           MASSTLVPIS   +RSSP HRL IP  KPF  +HS +SV  I               SSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSIXXXXXXXXXXXXXXXSSD 60

Query: 61  IDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120
            DTTFFD  NPDED  +DPPEVPEGFV PPSFDEGP+E+E+EIAAAYEE+YGPAYSGVSV
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSK+KK GGFGSK KK+K RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 304
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]
BLAST of Carg07778 vs. TrEMBL
Match: tr|A0A2C9U897|A0A2C9U897_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G029300 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.2e-118
Identity = 231/304 (75.99%), Postives = 262/304 (86.18%), Query Frame = 0 

Query: 1   MASSTLVPISFHFVRSSPFHRLPIPQ-LKPFSGVHSALSVAPISSSILSATRVKSSDIDT 60
           + +STL  +S   + +   HRL + + ++ FS    +     +SS   + TR +SSDIDT
Sbjct: 5   VTASTLSSVSSLSIHTK--HRLSLSKPIRSFSLYSKSTQFISLSSRSTAITRAQSSDIDT 64

Query: 61  TFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFDT NP++D V+DPP  PE FV PP FDEGP+E+E+EIAAAYEELYGPAYSG S LG+
Sbjct: 65  TFFDTVNPEDDIVFDPPSPPEDFVPPPYFDEGPMETEEEIAAAYEELYGPAYSGESYLGS 124

Query: 121 DIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           D+YVMDSK+KK  GFGSK KK+K+RDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDK+
Sbjct: 125 DVYVMDSKVKKTTGFGSKGKKEKIRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQ 184

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 185 GQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 244

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQ+ S NALNNARATVVAVQKMKQF++VA+ERGIPME
Sbjct: 245 TGVIAGGAVRIVLEMAGVENALGKQLRSKNALNNARATVVAVQKMKQFQDVARERGIPME 304

Query: 301 ELWK 304
           ELWK
Sbjct: 305 ELWK 306

[Close]
BLAST of Carg07778 vs. TrEMBL
Match: tr|A0A0D2RDP8|A0A0D2RDP8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G256400 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 4.4e-118
Identity = 222/253 (87.75%), Postives = 238/253 (94.07%), Query Frame = 0 

Query: 51  RVKSSDIDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPA 110
           + KSSDIDT+FFD  NP+ED V+DPP  PEGF  PPSFDEGP E+EDEIAAAYEELYGPA
Sbjct: 49  QAKSSDIDTSFFDDVNPEEDIVFDPPTPPEGFTPPPSFDEGPEETEDEIAAAYEELYGPA 108

Query: 111 YSGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFR 170
           YSGVSVLGND+YVMDSK+KK   FG K+KK+K+RDGFEERVVQVRRVTKVVKGGKQLHFR
Sbjct: 109 YSGVSVLGNDVYVMDSKVKKSSAFG-KVKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFR 168

Query: 171 AIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAK 230
           AIVVVGDK+GQVGVGVGKAKEVI AVQKSA+NARRNI+T+PMTKYLTFPHRSEGDYGAAK
Sbjct: 169 AIVVVGDKQGQVGVGVGKAKEVIGAVQKSAVNARRNIITIPMTKYLTFPHRSEGDYGAAK 228

Query: 231 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREV 290
           VMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVVAVQKMKQFREV
Sbjct: 229 VMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSKNALNNARATVVAVQKMKQFREV 288

Query: 291 AQERGIPMEELWK 304
           AQERGIPMEELWK
Sbjct: 289 AQERGIPMEELWK 300

[Close]
BLAST of Carg07778 vs. TrEMBL
Match: tr|A0A0B0PT69|A0A0B0PT69_GOSAR (30S ribosomal S5, chloroplastic-like protein OS=Gossypium arboreum OX=29729 GN=F383_11522 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 4.4e-118
Identity = 222/253 (87.75%), Postives = 238/253 (94.07%), Query Frame = 0 

Query: 51  RVKSSDIDTTFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPA 110
           + KSSDIDT+FFD  NP+ED V+DPP  PEGF  PPSFDEGP E+EDEIAAAYEELYGPA
Sbjct: 49  QAKSSDIDTSFFDDVNPEEDIVFDPPTPPEGFTPPPSFDEGPEETEDEIAAAYEELYGPA 108

Query: 111 YSGVSVLGNDIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFR 170
           YSGVSVLGND+YVMDSK+KK   FG K+KK+K+RDGFEERVVQVRRVTKVVKGGKQLHFR
Sbjct: 109 YSGVSVLGNDVYVMDSKVKKSSAFG-KVKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFR 168

Query: 171 AIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAK 230
           AIVVVGDK+GQVGVGVGKAKEVI AVQKSA+NARRNI+T+PMTKYLTFPHRSEGDYGAAK
Sbjct: 169 AIVVVGDKQGQVGVGVGKAKEVIGAVQKSAVNARRNIITIPMTKYLTFPHRSEGDYGAAK 228

Query: 231 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREV 290
           VMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVVAVQKMKQFREV
Sbjct: 229 VMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSKNALNNARATVVAVQKMKQFREV 288

Query: 291 AQERGIPMEELWK 304
           AQERGIPMEELWK
Sbjct: 289 AQERGIPMEELWK 300

The following BLAST results are available for this feature:
BLAST of Carg07778 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926879.14.4e-162100.0030S ribosomal protein S5, chloroplastic-like [Cucurbita moschata] >XP_022926880.... [more]
XP_023518483.16.3e-16199.0130S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02... [more]
XP_023003349.15.4e-16099.0130S ribosomal protein S5, chloroplastic-like [Cucurbita maxima] >XP_023003350.1 ... [more]
XP_022142374.16.6e-14288.8230S ribosomal protein S5, chloroplastic [Momordica charantia][more]
XP_023544602.11.9e-14188.8230S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07778 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33800.12.9e-10777.78Ribosomal protein S5 family protein[more]
AT1G64880.19.8e-1531.45Ribosomal protein S5 family protein[more]
AT1G58983.12.0e-1232.43Ribosomal protein S5 family protein[more]
AT1G59359.12.0e-1232.43Ribosomal protein S5 family protein[more]
AT1G58380.12.0e-1232.43Ribosomal protein S5 family protein[more]
BLAST of Carg07778 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ST69|RR5_SPIOL1.9e-10878.1730S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=... [more]
sp|P93014|RR5_ARATH5.2e-10677.7830S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 ... [more]
sp|Q1XDJ0|RR5_PYRYE7.1e-4758.6830S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=... [more]
sp|B1WQS7|RS5_CYAA57.1e-4758.6830S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) OX=43989 GN=rpsE ... [more]
sp|Q31L23|RS5_SYNE79.3e-4760.2630S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN... [more]
BLAST of Carg07778 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KK69|A0A0A0KK69_CUCSA1.5e-13986.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=3 SV=1[more]
tr|A0A1S3AZA3|A0A1S3AZA3_CUCME1.8e-13283.0630S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 ... [more]
tr|A0A2C9U897|A0A2C9U897_MANES1.2e-11875.99Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G029300 PE=3 SV=... [more]
tr|A0A0D2RDP8|A0A0D2RDP8_GOSRA4.4e-11887.75Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G256400 PE=3 ... [more]
tr|A0A0B0PT69|A0A0B0PT69_GOSAR4.4e-11887.7530S ribosomal S5, chloroplastic-like protein OS=Gossypium arboreum OX=29729 GN=F... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR018192Ribosomal_S5_N_CS
IPR000851Ribosomal_S5
IPR013810Ribosomal_S5_N
IPR005712Ribosomal_S5_bac-type
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR005324Ribosomal_S5_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07778-RACarg07778-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 224..294
e-value: 1.7E-25
score: 88.2
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 212..303
e-value: 8.4E-32
score: 110.6
IPR005712Ribosomal protein S5, bacterial-typeTIGRFAMTIGR01021TIGR01021coord: 146..300
e-value: 3.6E-59
score: 197.0
IPR005712Ribosomal protein S5, bacterial-typeHAMAPMF_01307_BRibosomal_S5_Bcoord: 128..300
score: 32.519
NoneNo IPR availableGENE3DG3DSA:3.30.160.20coord: 144..209
e-value: 4.1E-27
score: 95.8
NoneNo IPR availablePANTHERPTHR13718:SF80SUBFAMILY NOT NAMEDcoord: 39..303
NoneNo IPR availableSUPERFAMILYSSF54768dsRNA-binding domain-likecoord: 142..212
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 147..211
e-value: 2.6E-24
score: 84.9
IPR013810Ribosomal protein S5, N-terminalPROSITEPS50881S5_DSRBDcoord: 147..210
score: 25.166
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 39..303
IPR018192Ribosomal protein S5, N-terminal, conserved sitePROSITEPS00585RIBOSOMAL_S5coord: 164..196
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 217..295

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07778Cla009625Watermelon (97103) v1carwmB0642
Carg07778Csa6G517420Cucumber (Chinese Long) v2carcuB0663
Carg07778MELO3C007277Melon (DHL92) v3.5.1carmeB0642
Carg07778ClCG01G023060Watermelon (Charleston Gray)carwcgB0623
Carg07778CSPI06G34690Wild cucumber (PI 183967)carcpiB0672
Carg07778Cucsa.046280Cucumber (Gy14) v1carcgyB0714
Carg07778CmaCh07G002360Cucurbita maxima (Rimu)carcmaB0914
Carg07778CmaCh03G012720Cucurbita maxima (Rimu)carcmaB0913
Carg07778CmoCh07G002330Cucurbita moschata (Rifu)carcmoB0888
Carg07778CmoCh03G012670Cucurbita moschata (Rifu)carcmoB0887
Carg07778Lsi01G003080Bottle gourd (USVL1VR-Ls)carlsiB585
Carg07778Cp4.1LG10g04980Cucurbita pepo (Zucchini)carcpeB0912
Carg07778Cp4.1LG19g07170Cucurbita pepo (Zucchini)carcpeB0915
Carg07778CsGy6G034210Cucumber (Gy14) v2carcgybB0640
Carg07778MELO3C007277.2Melon (DHL92) v3.6.1carmedB0652
Carg07778CsaV3_6G050190Cucumber (Chinese Long) v3carcucB0674
Carg07778Cla97C01G022950Watermelon (97103) v2carwmbB0669
Carg07778Bhi03G000309Wax gourdcarwgoB0759
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07778Carg15298Silver-seed gourdcarcarB507
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07778Silver-seed gourdcarcarB034
Carg07778Silver-seed gourdcarcarB175
Carg07778Silver-seed gourdcarcarB564
Carg07778Cucumber (Gy14) v2carcgybB0638
Carg07778Cucumber (Gy14) v1carcgyB0716
Carg07778Cucurbita maxima (Rimu)carcmaB0905
Carg07778Cucurbita maxima (Rimu)carcmaB0906
Carg07778Cucurbita maxima (Rimu)carcmaB0908
Carg07778Cucurbita maxima (Rimu)carcmaB0911
Carg07778Cucurbita moschata (Rifu)carcmoB0882
Carg07778Cucurbita moschata (Rifu)carcmoB0883
Carg07778Cucurbita pepo (Zucchini)carcpeB0911
Carg07778Cucurbita pepo (Zucchini)carcpeB0916
Carg07778Cucurbita pepo (Zucchini)carcpeB0918
Carg07778Wild cucumber (PI 183967)carcpiB0670
Carg07778Cucumber (Chinese Long) v2carcuB0661
Carg07778Cucumber (Chinese Long) v3carcucB0672
Carg07778Bottle gourd (USVL1VR-Ls)carlsiB586
Carg07778Melon (DHL92) v3.5.1carmeB0639
Carg07778Melon (DHL92) v3.6.1carmedB0648
Carg07778Watermelon (Charleston Gray)carwcgB0625
Carg07778Watermelon (97103) v1carwmB0640
Carg07778Watermelon (97103) v2carwmbB0671