Cucsa.043330 (gene) Cucumber (Gy14) v1

NameCucsa.043330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionOxidoreductase-like, N-terminal
Locationscaffold00542 : 174552 .. 175198 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAGCTACAATTGGCTGTCGGGGGCGATCTATTTTATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGCAGAGAAAGAGAAAGAGAAAGAGGAGATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGAGATTTCAATTTCAGGCTTCCTCCAGCCCCAGTTTGTAATTGAAAATTGAATCTGTTTGCTGTTGTAAACTCAACGAGTTCAAATTAAATTGAATCTGTATCTGTTTCTTTAAGAACAATTGTTCAGTGAGATGAAGGCCAATAAACACAATTCATTTGTCATAGCACAGCACG

mRNA sequence

AGTAGCTACAATTGGCTGTCGGGGGCGATCTATTTTATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCgaagaagaaaggcgtggaggaggagaaagcagagaaagagaaagagaaagaggagATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGAGATTTCAATTTCAGGCTTCCTCCAGCCCCAGTTTGTAATTGAAAATTGAATCTGTTTGCTGTTGTAAACTCAACGAGTTCAAATTAAATTGAATCTGTATCTGTTTCTTTAAGAACAATTGTTCAGTGAGATGAAGGCCAATAAACACAATTCATTTGTCATAGCACAGCACG

Coding sequence (CDS)

ATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGCAGAGAAAGAGAAAGAGAAAGAGGAGATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGA

Protein sequence

MKLIDLNFAPNYLFLSSLSNHNSNCLRRLRPEYVRPFLPWAMRRVPTKIIPNFQSSRIYPNSIMASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPPNC*
BLAST of Cucsa.043330 vs. Swiss-Prot
Match: YJH2_SCHPO (UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP31B10.02 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-07
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1

Query: 98  VKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEK 139
           +++PP PE+PL  +CC SGC  CVWDVY ++LE+YN+   K
Sbjct: 52  IRVPPKPEEPL--NCCQSGCAICVWDVYADDLEEYNRARRK 90

BLAST of Cucsa.043330 vs. Swiss-Prot
Match: NB5R5_MOUSE (NADH-cytochrome b5 reductase-like OS=Mus musculus GN=Cyb5rl PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.9e-06
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1

Query: 88  AEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELE 131
           AE E+E++    L   P +PLP  CCGSGC  CV+D+YY +LE
Sbjct: 2   AETEEEEDSEAWLRLKPVEPLPSQCCGSGCSPCVFDLYYRDLE 44

BLAST of Cucsa.043330 vs. TrEMBL
Match: A0A0A0KKK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504670 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1

Query: 64  MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD 123
           MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD
Sbjct: 1   MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD 60

Query: 124 VYYEELEDYNKLCEKGS 141
           VYYEELEDYNKLCEKGS
Sbjct: 61  VYYEELEDYNKLCEKGS 77

BLAST of Cucsa.043330 vs. TrEMBL
Match: M4E4A5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-19
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1

Query: 69  TREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEE 128
           T+  ++S + K K VEE+K EK+K+K+E V LPPPPEKP  GDCCGSGCVRCVWDVYY+E
Sbjct: 68  TKSDKTSTEVKDKVVEEKK-EKDKDKKEEVSLPPPPEKPEAGDCCGSGCVRCVWDVYYDE 127

Query: 129 LEDYNKL 136
           LE+YNKL
Sbjct: 128 LEEYNKL 133

BLAST of Cucsa.043330 vs. TrEMBL
Match: A0A103XKF0_CYNCS (Oxidoreductase-like, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_005642 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-18
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1

Query: 61  NSIMASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRC 120
           NSIM   G +    S D    G+   K  KE EK  + ++PPPPEKPLPGDCCGSGCVRC
Sbjct: 81  NSIMDGSGAKNEIRSGD----GLSAVKDTKETEK--LPEIPPPPEKPLPGDCCGSGCVRC 140

Query: 121 VWDVYYEELEDYNKLCE 138
           VWD+YYEELE+YNKLC+
Sbjct: 141 VWDIYYEELEEYNKLCK 151

BLAST of Cucsa.043330 vs. TrEMBL
Match: A0A087GEK2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-18
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 1

Query: 61  NSIMA--SEGTREMQSS--VDSKKKG---VEEEKAEKEKEKEEMVKLPPPPEKPLPGDCC 120
           NSI A  S G+R+  S   V    K    VE    EK+K+KEE V LPPPPEKP  GDCC
Sbjct: 51  NSITAINSSGSRQQNSKSPVTMATKNDNLVETATEEKDKKKEEEVSLPPPPEKPEAGDCC 110

Query: 121 GSGCVRCVWDVYYEELEDYNKLCEKGSA 142
           GSGCVRCVWDVYY+ELE+YNKL    SA
Sbjct: 111 GSGCVRCVWDVYYDELEEYNKLISPKSA 138

BLAST of Cucsa.043330 vs. TrEMBL
Match: A0A061DLT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000269 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-18
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 1

Query: 66  SEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVY 125
           S+ +  ++ + D KKKG EEE A+K         LPPPPEKP PGDCCGSGCVRCVWDVY
Sbjct: 48  SKASSAIKDTGDDKKKGDEEELAKK---------LPPPPEKPEPGDCCGSGCVRCVWDVY 107

Query: 126 YEELEDYNKLCEKGSAPP 144
           YEELE YNKL E  S  P
Sbjct: 108 YEELEAYNKLRESDSKAP 116

BLAST of Cucsa.043330 vs. TAIR10
Match: AT5G17280.1 (AT5G17280.1 Oxidoreductase-like, N-terminal (InterPro:IPR019180))

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-21
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1

Query: 43  RRVPTK-IIPNFQSSRIYPNSIMASE---GTREMQSSVDSKKKGVEEEKAEKEKEKEEMV 102
           R +P K    N+  + + P   + S     T E ++ V++ K+  E  K E E +KE  V
Sbjct: 33  RHLPLKRSFSNYSITSVSPEQQLKSPVTMATTESKNLVEASKE--ETNKKETEDKKEVGV 92

Query: 103 KLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNK 135
            +PPPPEKP PGDCCGSGCVRCVWDVYY+ELEDYNK
Sbjct: 93  SVPPPPEKPEPGDCCGSGCVRCVWDVYYDELEDYNK 126

BLAST of Cucsa.043330 vs. NCBI nr
Match: gi|659080428|ref|XP_008440785.1| (PREDICTED: uncharacterized protein LOC103485102 [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 4.0e-72
Identity = 133/148 (89.86%), Postives = 137/148 (92.57%), Query Frame = 1

Query: 1   MKLIDLNFAPNYLFLSSLSNHNSNCLRRLRPEYVRPFLPWAMRRVPTKIIPNFQSSRIYP 60
           MKLI+ NFAPN LFLSSL NHNSNCLRRLRPEYVRPFLPW MRRVPTKIIPNFQSSRIYP
Sbjct: 1   MKLIEPNFAPNALFLSSLPNHNSNCLRRLRPEYVRPFLPWVMRRVPTKIIPNFQSSRIYP 60

Query: 61  NSIMASEGTREMQSSVDSKKKGVEEEKA----EKEKEKEEMVKLPPPPEKPLPGDCCGSG 120
           NSIMAS+ TREMQSSVDSKKKG EEEK     EKEKEKE++VKLPPPPEKPLPGDCCGSG
Sbjct: 61  NSIMASDATREMQSSVDSKKKGAEEEKVEKEEEKEKEKEKIVKLPPPPEKPLPGDCCGSG 120

Query: 121 CVRCVWDVYYEELEDYNKLCEKGSAPPN 145
           CVRCVWDVYYEELEDYNKLCEKGSAPPN
Sbjct: 121 CVRCVWDVYYEELEDYNKLCEKGSAPPN 148

BLAST of Cucsa.043330 vs. NCBI nr
Match: gi|700193683|gb|KGN48887.1| (hypothetical protein Csa_6G504670 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1

Query: 64  MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD 123
           MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD
Sbjct: 1   MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD 60

Query: 124 VYYEELEDYNKLCEKGS 141
           VYYEELEDYNKLCEKGS
Sbjct: 61  VYYEELEDYNKLCEKGS 77

BLAST of Cucsa.043330 vs. NCBI nr
Match: gi|685270307|ref|XP_009126175.1| (PREDICTED: uncharacterized protein LOC103851097 [Brassica rapa])

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-19
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1

Query: 69  TREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEE 128
           T+  ++S + K K VEE+K EK+K+K+E V LPPPPEKP  GDCCGSGCVRCVWDVYY+E
Sbjct: 68  TKSDKTSTEVKDKVVEEKK-EKDKDKKEEVSLPPPPEKPEAGDCCGSGCVRCVWDVYYDE 127

Query: 129 LEDYNKL 136
           LE+YNKL
Sbjct: 128 LEEYNKL 133

BLAST of Cucsa.043330 vs. NCBI nr
Match: gi|976904659|gb|KVH92323.1| (Oxidoreductase-like, N-terminal [Cynara cardunculus var. scolymus])

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1

Query: 61  NSIMASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRC 120
           NSIM   G +    S D    G+   K  KE EK  + ++PPPPEKPLPGDCCGSGCVRC
Sbjct: 81  NSIMDGSGAKNEIRSGD----GLSAVKDTKETEK--LPEIPPPPEKPLPGDCCGSGCVRC 140

Query: 121 VWDVYYEELEDYNKLCE 138
           VWD+YYEELE+YNKLC+
Sbjct: 141 VWDIYYEELEEYNKLCK 151

BLAST of Cucsa.043330 vs. NCBI nr
Match: gi|590703092|ref|XP_007046781.1| (Uncharacterized protein TCM_000269 [Theobroma cacao])

HSP 1 Score: 99.0 bits (245), Expect = 7.3e-18
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 1

Query: 66  SEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVY 125
           S+ +  ++ + D KKKG EEE A+K         LPPPPEKP PGDCCGSGCVRCVWDVY
Sbjct: 48  SKASSAIKDTGDDKKKGDEEELAKK---------LPPPPEKPEPGDCCGSGCVRCVWDVY 107

Query: 126 YEELEDYNKLCEKGSAPP 144
           YEELE YNKL E  S  P
Sbjct: 108 YEELEAYNKLRESDSKAP 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YJH2_SCHPO4.5e-0753.66UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
NB5R5_MOUSE4.9e-0651.16NADH-cytochrome b5 reductase-like OS=Mus musculus GN=Cyb5rl PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KKK8_CUCSA1.5e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504670 PE=4 SV=1[more]
M4E4A5_BRARP6.0e-1968.66Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A103XKF0_CYNCS3.9e-1861.04Oxidoreductase-like, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_0056... [more]
A0A087GEK2_ARAAL5.1e-1860.23Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499200 PE=4 SV=1[more]
A0A061DLT1_THECC5.1e-1861.54Uncharacterized protein OS=Theobroma cacao GN=TCM_000269 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17280.19.8e-2151.04 Oxidoreductase-like, N-terminal (InterPro:IPR019180)[more]
Match NameE-valueIdentityDescription
gi|659080428|ref|XP_008440785.1|4.0e-7289.86PREDICTED: uncharacterized protein LOC103485102 [Cucumis melo][more]
gi|700193683|gb|KGN48887.1|2.2e-38100.00hypothetical protein Csa_6G504670 [Cucumis sativus][more]
gi|685270307|ref|XP_009126175.1|8.7e-1968.66PREDICTED: uncharacterized protein LOC103851097 [Brassica rapa][more]
gi|976904659|gb|KVH92323.1|5.6e-1861.04Oxidoreductase-like, N-terminal [Cynara cardunculus var. scolymus][more]
gi|590703092|ref|XP_007046781.1|7.3e-1861.54Uncharacterized protein TCM_000269 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019180Oxidoreductase-like_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.043330.1Cucsa.043330.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019180Oxidoreductase-like, N-terminalPFAMPF09791Oxidored-likecoord: 98..137
score: 5.5
NoneNo IPR availableunknownCoilCoilcoord: 76..100
scor
NoneNo IPR availablePANTHERPTHR21193FAMILY NOT NAMEDcoord: 85..134
score: 8.0

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.043330Cucurbita pepo (Zucchini)cgycpeB0033
Cucsa.043330Cucurbita pepo (Zucchini)cgycpeB0042
Cucsa.043330Bottle gourd (USVL1VR-Ls)cgylsiB025
Cucsa.043330Bottle gourd (USVL1VR-Ls)cgylsiB027
Cucsa.043330Bottle gourd (USVL1VR-Ls)cgylsiB028
Cucsa.043330Melon (DHL92) v3.6.1cgymedB021
Cucsa.043330Melon (DHL92) v3.6.1cgymedB022
Cucsa.043330Silver-seed gourdcarcgyB0466
Cucsa.043330Silver-seed gourdcarcgyB1090
Cucsa.043330Cucumber (Chinese Long) v3cgycucB021
Cucsa.043330Cucumber (Chinese Long) v3cgycucB025
Cucsa.043330Watermelon (97103) v2cgywmbB025
Cucsa.043330Watermelon (97103) v2cgywmbB026
Cucsa.043330Watermelon (97103) v2cgywmbB017
Cucsa.043330Watermelon (97103) v2cgywmbB027
Cucsa.043330Cucumber (Gy14) v1cgycgyB009
Cucsa.043330Cucurbita maxima (Rimu)cgycmaB0047
Cucsa.043330Cucurbita maxima (Rimu)cgycmaB0034
Cucsa.043330Cucurbita maxima (Rimu)cgycmaB0036
Cucsa.043330Cucurbita moschata (Rifu)cgycmoB0032
Cucsa.043330Cucurbita moschata (Rifu)cgycmoB0042
Cucsa.043330Wild cucumber (PI 183967)cgycpiB021
Cucsa.043330Wild cucumber (PI 183967)cgycpiB024
Cucsa.043330Wild cucumber (PI 183967)cgycpiB026
Cucsa.043330Cucumber (Chinese Long) v2cgycuB019
Cucsa.043330Cucumber (Chinese Long) v2cgycuB023
Cucsa.043330Cucumber (Chinese Long) v2cgycuB025
Cucsa.043330Cucumber (Chinese Long) v2cgycuB027
Cucsa.043330Melon (DHL92) v3.5.1cgymeB025
Cucsa.043330Melon (DHL92) v3.5.1cgymeB022
Cucsa.043330Melon (DHL92) v3.5.1cgymeB023
Cucsa.043330Watermelon (Charleston Gray)cgywcgB031
Cucsa.043330Watermelon (Charleston Gray)cgywcgB022
Cucsa.043330Watermelon (Charleston Gray)cgywcgB029
Cucsa.043330Watermelon (97103) v1cgywmB019
Cucsa.043330Watermelon (97103) v1cgywmB023
Cucsa.043330Watermelon (97103) v1cgywmB025
Cucsa.043330Watermelon (97103) v1cgywmB026