CmoCh07G004460 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G004460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionAmino-terminal oxidoreductase-like protein
LocationCmo_Chr07 : 2050029 .. 2050457 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGATCCACCACAATTTCATTCCGTCTTCCATTTTCTCCTCATCTTTATCGAATCGTAACTCAAATCGTCTGCGCCAATTCGAGGCAGAGAATGTGCGGCGATATGTCCCCTTGGCCATGAGACGAGTCCCTGCGAAAATAATCCCCAATTTCCAGTCGTCAAGCGTTTACCCTAAATCGATCATGGCTAGCGACGGAGCCAGAGAAATCCAATCAGTCGATTTGCAGAGGACAGGCGTGGAGGAGAAAGAAAAGAAAGCGACAGAGAAGAAGGCCGTGAAATTGCCGCCGCCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGTAGTGGATGCGTCCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAATAAGCTTTGCGAGAAAGGTTCGGCGTCCAATTCTTGA

mRNA sequence

ATGAAATTGATCCACCACAATTTCATTCCGTCTTCCATTTTCTCCTCATCTTTATCGAATCGTAACTCAAATCGTCTGCGCCAATTCGAGGCAGAGAATGTGCGGCGATATGTCCCCTTGGCCATGAGACGAGTCCCTGCGAAAATAATCCCCAATTTCCAGTCGTCAAGCGTTTACCCTAAATCGATCATGGCTAGCGACGGAGCCAGAGAAATCCAATCAGTCGATTTGCAGAGGACAGGCGTGGAGGAGAAAGAAAAGAAAGCGACAGAGAAGAAGGCCGTGAAATTGCCGCCGCCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGTAGTGGATGCGTCCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAATAAGCTTTGCGAGAAAGGTTCGGCGTCCAATTCTTGA

Coding sequence (CDS)

ATGAAATTGATCCACCACAATTTCATTCCGTCTTCCATTTTCTCCTCATCTTTATCGAATCGTAACTCAAATCGTCTGCGCCAATTCGAGGCAGAGAATGTGCGGCGATATGTCCCCTTGGCCATGAGACGAGTCCCTGCGAAAATAATCCCCAATTTCCAGTCGTCAAGCGTTTACCCTAAATCGATCATGGCTAGCGACGGAGCCAGAGAAATCCAATCAGTCGATTTGCAGAGGACAGGCGTGGAGGAGAAAGAAAAGAAAGCGACAGAGAAGAAGGCCGTGAAATTGCCGCCGCCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGTAGTGGATGCGTCCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAATAAGCTTTGCGAGAAAGGTTCGGCGTCCAATTCTTGA
BLAST of CmoCh07G004460 vs. Swiss-Prot
Match: YJH2_SCHPO (UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP31B10.02 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1

Query: 99  PPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEK 137
           PP PE+PL  +CC SGC  CVWDVY ++LE+YN+   K
Sbjct: 55  PPKPEEPL--NCCQSGCAICVWDVYADDLEEYNRARRK 90

BLAST of CmoCh07G004460 vs. TrEMBL
Match: A0A0A0KKK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504670 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 64  MASDGAREIQS-VDLQRTGVEEK--EKKATEKKAVKLPPPPPEKPLPGDCCGSGCVRCVW 123
           MAS+G RE+QS VD ++ GVEE+  EK+  +++ VKL PPPPEKPLPGDCCGSGCVRCVW
Sbjct: 1   MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKL-PPPPEKPLPGDCCGSGCVRCVW 60

Query: 124 DVYYEELEDYNKLCEKGS 139
           DVYYEELEDYNKLCEKGS
Sbjct: 61  DVYYEELEDYNKLCEKGS 77

BLAST of CmoCh07G004460 vs. TrEMBL
Match: A0A0D3AJH1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 60/137 (43.80%), Postives = 78/137 (56.93%), Query Frame = 1

Query: 1   MKLIHHNFIPSSIFSSSLSNRNSNRLRQFEAENVRRYVPLAMRRVPAKIIPNFQSSSVYP 60
           M L+HH+ +      S  ++ + NRLR+   +     V L+MR    + +P  +SS  Y 
Sbjct: 1   MVLLHHHGLHLHPRISIATSPDYNRLRKSLDD-----VLLSMRFGLTRDLPLKRSSFAY- 60

Query: 61  KSIMASDGAREIQSVDL----QRTGVEEKEKKATEKKAVKLPPPPPEKPLPGDCCGSGCV 120
                  G+RE Q + +     +T  E KEK   EKK     PPPPEKP  GDCCGSGCV
Sbjct: 61  -----YSGSREQQPITMATKGDKTSTEVKEKVVEEKKKEVSLPPPPEKPEAGDCCGSGCV 120

Query: 121 RCVWDVYYEELEDYNKL 134
           RCVWDVYY+ELE+YNKL
Sbjct: 121 RCVWDVYYDELEEYNKL 126

BLAST of CmoCh07G004460 vs. TrEMBL
Match: A9P8F3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-16
Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 1

Query: 1   MKLIHHNFIPSSIFSSSLSNRNS--NRLRQFEAENVRRYVPLAMRRVPAKIIPNFQSSSV 60
           M+   HN   S IFS +L    +  N    F       + P+ +   P  I   F S S 
Sbjct: 1   MEATLHNHFLSRIFSYTLPKPKNPPNDPTHFIFAMKNPFKPIFIS--PKTI--TFNSRSQ 60

Query: 61  YPKS-------IMASDGARE-IQSVDLQRTGVEEKEKKATEKKAVKLPPPPPEKPLPGDC 120
            PKS       +MA++   E I+S  + + G EE +KK         PPPPPEKP PGDC
Sbjct: 61  DPKSCHVTANFVMATENKNEQIESTVMSKQGEEESKKKTAPP-----PPPPPEKPEPGDC 120

Query: 121 CGSGCVRCVWDVYYEELEDYNKLCEKGSASN 142
           CGSGCVRCVWDVYYEELE+Y+KL +  S+ +
Sbjct: 121 CGSGCVRCVWDVYYEELEEYDKLYKSDSSKS 142

BLAST of CmoCh07G004460 vs. TrEMBL
Match: A0A103XKF0_CYNCS (Oxidoreductase-like, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_005642 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-16
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1

Query: 62  SIMASDGAR-EIQSVDLQRTGVEE-KEKKATEKKAVKLP--PPPPEKPLPGDCCGSGCVR 121
           SIM   GA+ EI+S D    G+   K+ K TEK    LP  PPPPEKPLPGDCCGSGCVR
Sbjct: 82  SIMDGSGAKNEIRSGD----GLSAVKDTKETEK----LPEIPPPPEKPLPGDCCGSGCVR 141

Query: 122 CVWDVYYEELEDYNKLCE 136
           CVWD+YYEELE+YNKLC+
Sbjct: 142 CVWDIYYEELEEYNKLCK 151

BLAST of CmoCh07G004460 vs. TrEMBL
Match: D7LWZ1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488592 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-16
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 1

Query: 35  RRYVPLAMRRVPAKIIPNFQSSSVYPKSIMASDGAREI-QSVDLQRTGVEEKEKKATEKK 94
           RR++PL       +   N+  +SV P+  + S       +S +L +   EE  KK  E  
Sbjct: 32  RRHLPLK------RPFTNYSITSVSPEQQLISPVTMATTESQNLVQASKEETNKKEVEDT 91

Query: 95  AVKLPPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNK 133
              L PPPPEKP PGDCCGSGCVRCVWDVYYEELEDYNK
Sbjct: 92  KEILAPPPPEKPEPGDCCGSGCVRCVWDVYYEELEDYNK 124

BLAST of CmoCh07G004460 vs. TAIR10
Match: AT5G17280.1 (AT5G17280.1 Oxidoreductase-like, N-terminal (InterPro:IPR019180))

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-18
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = 1

Query: 43  RRVPAK-IIPNFQSSSVYPKSIMASDGAREI-QSVDLQRTGVEEKEKKATE-KKAVKLP- 102
           R +P K    N+  +SV P+  + S       +S +L     EE  KK TE KK V +  
Sbjct: 33  RHLPLKRSFSNYSITSVSPEQQLKSPVTMATTESKNLVEASKEETNKKETEDKKEVGVSV 92

Query: 103 PPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNK 133
           PPPPEKP PGDCCGSGCVRCVWDVYY+ELEDYNK
Sbjct: 93  PPPPEKPEPGDCCGSGCVRCVWDVYYDELEDYNK 126

BLAST of CmoCh07G004460 vs. NCBI nr
Match: gi|659080428|ref|XP_008440785.1| (PREDICTED: uncharacterized protein LOC103485102 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 1

Query: 1   MKLIHHNFIPSSIFSSSLSNRNSNRLRQFEAENVRRYVPLAMRRVPAKIIPNFQSSSVYP 60
           MKLI  NF P+++F SSL N NSN LR+   E VR ++P  MRRVP KIIPNFQSS +YP
Sbjct: 1   MKLIEPNFAPNALFLSSLPNHNSNCLRRLRPEYVRPFLPWVMRRVPTKIIPNFQSSRIYP 60

Query: 61  KSIMASDGAREIQS-VDLQRTGVEEK-----EKKATEKKAVKLPPPPPEKPLPGDCCGSG 120
            SIMASD  RE+QS VD ++ G EE+     E+K  EK+ +   PPPPEKPLPGDCCGSG
Sbjct: 61  NSIMASDATREMQSSVDSKKKGAEEEKVEKEEEKEKEKEKIVKLPPPPEKPLPGDCCGSG 120

Query: 121 CVRCVWDVYYEELEDYNKLCEKGSA 140
           CVRCVWDVYYEELEDYNKLCEKGSA
Sbjct: 121 CVRCVWDVYYEELEDYNKLCEKGSA 145

BLAST of CmoCh07G004460 vs. NCBI nr
Match: gi|700193683|gb|KGN48887.1| (hypothetical protein Csa_6G504670 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 64  MASDGAREIQS-VDLQRTGVEEK--EKKATEKKAVKLPPPPPEKPLPGDCCGSGCVRCVW 123
           MAS+G RE+QS VD ++ GVEE+  EK+  +++ VKL PPPPEKPLPGDCCGSGCVRCVW
Sbjct: 1   MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKL-PPPPEKPLPGDCCGSGCVRCVW 60

Query: 124 DVYYEELEDYNKLCEKGS 139
           DVYYEELEDYNKLCEKGS
Sbjct: 61  DVYYEELEDYNKLCEKGS 77

BLAST of CmoCh07G004460 vs. NCBI nr
Match: gi|1009181324|ref|XP_015872105.1| (PREDICTED: uncharacterized protein LOC107409185 [Ziziphus jujuba])

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 1

Query: 6   HNFIPSSIFSSSLSNRNSNRLRQFEAENVRRYVPLAM---------RRVPAKIIPNFQSS 65
           H    +S ++S+++N      +Q + +NVR +  L M         R +P+   P   +S
Sbjct: 8   HRLRWTSAYTSAIANH-----KQAKKKNVRTHTGLGMTMRGVLALKRVLPSNSNPVITNS 67

Query: 66  SVYPKSI--------MASDGAREIQSVD-LQRTGVEEKEKKATEKKAVKLPPPPPEKPLP 125
           +  P+S+        MA +   +    +   + G++ K K+   +      PPPPEKPLP
Sbjct: 68  NYPPRSLGPRCRRKSMADEAPNKTLPYESATKQGIDSKAKEDDAESKQSRAPPPPEKPLP 127

Query: 126 GDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 143
           GDCCGSGCVRCVWDVYYEELE+YNKL +  S +NS
Sbjct: 128 GDCCGSGCVRCVWDVYYEELEEYNKLYKTESEANS 157

BLAST of CmoCh07G004460 vs. NCBI nr
Match: gi|922421010|ref|XP_013616386.1| (PREDICTED: uncharacterized protein LOC106322797 [Brassica oleracea var. oleracea])

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-16
Identity = 60/137 (43.80%), Postives = 78/137 (56.93%), Query Frame = 1

Query: 1   MKLIHHNFIPSSIFSSSLSNRNSNRLRQFEAENVRRYVPLAMRRVPAKIIPNFQSSSVYP 60
           M L+HH+ +      S  ++ + NRLR+   +     V L+MR    + +P  +SS  Y 
Sbjct: 1   MVLLHHHGLHLHPRISIATSPDYNRLRKSLDD-----VLLSMRFGLTRDLPLKRSSFAY- 60

Query: 61  KSIMASDGAREIQSVDL----QRTGVEEKEKKATEKKAVKLPPPPPEKPLPGDCCGSGCV 120
                  G+RE Q + +     +T  E KEK   EKK     PPPPEKP  GDCCGSGCV
Sbjct: 61  -----YSGSREQQPITMATKGDKTSTEVKEKVVEEKKKEVSLPPPPEKPEAGDCCGSGCV 120

Query: 121 RCVWDVYYEELEDYNKL 134
           RCVWDVYY+ELE+YNKL
Sbjct: 121 RCVWDVYYDELEEYNKL 126

BLAST of CmoCh07G004460 vs. NCBI nr
Match: gi|976904659|gb|KVH92323.1| (Oxidoreductase-like, N-terminal [Cynara cardunculus var. scolymus])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1

Query: 62  SIMASDGAR-EIQSVDLQRTGVEE-KEKKATEKKAVKLP--PPPPEKPLPGDCCGSGCVR 121
           SIM   GA+ EI+S D    G+   K+ K TEK    LP  PPPPEKPLPGDCCGSGCVR
Sbjct: 82  SIMDGSGAKNEIRSGD----GLSAVKDTKETEK----LPEIPPPPEKPLPGDCCGSGCVR 141

Query: 122 CVWDVYYEELEDYNKLCE 136
           CVWD+YYEELE+YNKLC+
Sbjct: 142 CVWDIYYEELEEYNKLCK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YJH2_SCHPO2.2e-0657.89UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
Match NameE-valueIdentityDescription
A0A0A0KKK8_CUCSA6.1e-2475.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504670 PE=4 SV=1[more]
A0A0D3AJH1_BRAOL3.6e-1643.80Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A9P8F3_POPTR6.1e-1641.72Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A0A103XKF0_CYNCS6.1e-1665.38Oxidoreductase-like, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_0056... [more]
D7LWZ1_ARALL6.1e-1650.51Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
Match NameE-valueIdentityDescription
AT5G17280.13.4e-1854.26 Oxidoreductase-like, N-terminal (InterPro:IPR019180)[more]
Match NameE-valueIdentityDescription
gi|659080428|ref|XP_008440785.1|2.4e-4566.90PREDICTED: uncharacterized protein LOC103485102 [Cucumis melo][more]
gi|700193683|gb|KGN48887.1|8.7e-2475.64hypothetical protein Csa_6G504670 [Cucumis sativus][more]
gi|1009181324|ref|XP_015872105.1|4.6e-1737.42PREDICTED: uncharacterized protein LOC107409185 [Ziziphus jujuba][more]
gi|922421010|ref|XP_013616386.1|5.1e-1643.80PREDICTED: uncharacterized protein LOC106322797 [Brassica oleracea var. oleracea... [more]
gi|976904659|gb|KVH92323.1|8.7e-1665.38Oxidoreductase-like, N-terminal [Cynara cardunculus var. scolymus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019180Oxidoreductase-like_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
biological_process GO:0022900 electron transport chain
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G004460.1CmoCh07G004460.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019180Oxidoreductase-like, N-terminalPFAMPF09791Oxidored-likecoord: 99..135
score: 2.9
NoneNo IPR availablePANTHERPTHR21193FAMILY NOT NAMEDcoord: 99..132
score: 2.4

The following gene(s) are paralogous to this gene:

None