Cucsa.033180 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.033180
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBasic blue protein
Locationscaffold00429 : 2574901 .. 2575472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACCACATCATTCCAAACACTACTCTCTCTTTTTAAAACCTTTaGCccTTTGTTACATTTTtGTTTGAGAAAATTTAGAAGAAGAATGGGTGAGGGAAGAGGCAGTGCAATGGTGTGTGTTGTGATGGTTTGTATGTTGTTGATGCTTCAATATTCTCACATGGCTCATGCTGCAGTCTATACTGTTGGAGGTGCTCAAGGCTGGACCTTCAATGTTGCCTCTTGGCCCAAGGGAAAGCGTTTTCGCGCCGGAGATACACTTGGTAACTTTACTATTTTTAAACATTTGAAAAGTCATTTCGAAAAGCTCCTAAATACTGTACTCATATGCTTAAACGTAATATTATTGGTACAACTAATTTTACTCAGAAATGTTTTtCCTTTCCAAGACTATCCTGTGTGATAAAAGTTATAGTAAAATTATTTTTTtAATCCCTTAAATTTTACTCATGAGCGAATTCAAAATAAATATTTTTAGTCTCTAATTTTATTAAATAGCAGCAGAGAAATTTTAAATGAAAAGAGAAAGAAATTAGCCATATTTAGGCCATGTTTACCCAATATAACCCC

mRNA sequence

TTCACCACATCATTCCAAACACTACTCTCTCTTTTTAAAACCTTTAGCCCTTTGTTACATTTTTGTTTGAGAAAATTTAGAAGAAGAATGGGTGAGGGAAGAGGCAGTGCAATGGTGTGTGTTGTGATGGTTTGTATGTTGTTGATGCTTCAATATTCTCACATGGCTCATGCTGCAGTCTATACTGTTGGAGGTGCTCAAGGCTGGACCTTCAATGTTGCCTCTTGGCCCAAGGGAAAGCGTTTTCGCGCCGGAGATACACTTGGTAACTTTACTATTTTTAAACATTTGAAAAGTCATTTCGAAAAGCTCCTAAATACTGTACTCATATGCTTAAACGTAATATTATTGGTACAACTAATTTTACTCAGAAATGTTTTTCCTTTCCAAGACTATCCTGTGTGATAAAAGTTATAGTAAAATTATTTTTTTAATCCCTTAAATTTTACTCATGAGCGAATTCAAAATAAATATTTTTAGTCTCTAATTTTATTAAATAGCAGCAGAGAAATTTTAAATGAAAAGAGAAAGAAATTAGCCATATTTAGGCCATGTTTACCCAATATAACCCC

Coding sequence (CDS)

ATGGGTGAGGGAAGAGGCAGTGCAATGGTGTGTGTTGTGATGGTTTGTATGTTGTTGATGCTTCAATATTCTCACATGGCTCATGCTGCAGTCTATACTGTTGGAGGTGCTCAAGGCTGGACCTTCAATGTTGCCTCTTGGCCCAAGGGAAAGCGTTTTCGCGCCGGAGATACACTTGGTAACTTTACTATTTTTAAACATTTGAAAAGTCATTTCGAAAAGCTCCTAAATACTGTACTCATATGCTTAAACGTAATATTATTGGTACAACTAATTTTACTCAGAAATGTTTTtCCTTTCCAAGACTATCCTGTGTGA

Protein sequence

MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLGNFTIFKHLKSHFEKLLNTVLICLNVILLVQLILLRNVFPFQDYPV*
Homology
[Close]
BLAST of Cucsa.033180 vs. Swiss-Prot
Match: BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-08
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 1  MGEGRGSAM-----VCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRA 60
          M +GRGSA      +  +M   +L+LQ  ++  AA YTVG +  WTFN   WPKGK FRA
Sbjct: 1  MAKGRGSASWSARAIVTLMAVSVLLLQADYV-QAATYTVGDSGIWTFNAVGWPKGKHFRA 60

[Close]
BLAST of Cucsa.033180 vs. Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-08
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYS-HMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          M +G GSA   +V+  +L+ L ++  +A + VYTVG   GWTF  + WP GK FRAGD L
Sbjct: 1  MAQGSGSAERALVLGVVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVL 60

Query: 61 GNFTIFKH 68
              +FK+
Sbjct: 61 ----VFKY 64

[Close]
BLAST of Cucsa.033180 vs. Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 

Query: 30 AVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          AVY VGG+ GWTFN  SWPKGKRFRAGD L
Sbjct: 1  AVYVVGGSGGWTFNTESWPKGKRFRAGDIL 30

[Close]
BLAST of Cucsa.033180 vs. TrEMBL
Match: A0A0A0LC13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215590 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL
Sbjct: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 59

[Close]
BLAST of Cucsa.033180 vs. TrEMBL
Match: V7CQP8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G250700g PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-14
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLG 60
          MG GRGSA+V ++ +C L++  +S MAHAA YTVGG+ GWTFN   WP GKRFRAGDTL 
Sbjct: 1  MGLGRGSAVVLLISLCFLVL--HSQMAHAATYTVGGSGGWTFNTVGWPNGKRFRAGDTL- 60

Query: 61 NFTIFKH 68
             +FK+
Sbjct: 61 ---VFKY 61

[Close]
BLAST of Cucsa.033180 vs. TrEMBL
Match: W9SBG7_9ROSA (Basic blue protein OS=Morus notabilis GN=L484_024185 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          MG+GR SAMV   ++ +LL+L  + +A AA YTVGGA GWTFNVA WPKGKRFRAGDTL
Sbjct: 1  MGQGRVSAMVAAALL-LLLVLSQTELARAATYTVGGAGGWTFNVAGWPKGKRFRAGDTL 58

[Close]
BLAST of Cucsa.033180 vs. TrEMBL
Match: A0A0S3QYS5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G098300 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 1   MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLG 60
           M  GRGSA+V  + +C  L+  +SHMAHAA YTVGG+  WTFN   WPKGKRFRAGDTL 
Sbjct: 59  MALGRGSAVVLSLSLCFFLL--HSHMAHAATYTVGGSNRWTFNTVGWPKGKRFRAGDTL- 118

Query: 61  NFTIFKH 68
              +FK+
Sbjct: 119 ---VFKY 119

[Close]
BLAST of Cucsa.033180 vs. TrEMBL
Match: A0A0L9TDX5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan564s002800 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLG 60
          M  GRGSA+V  + +C  L+  +SHMAHAA YTVGG+  WTFN   WPKGKRFRAGDTL 
Sbjct: 1  MALGRGSAVVLSLSLCFFLL--HSHMAHAATYTVGGSNRWTFNTVGWPKGKRFRAGDTL- 60

Query: 61 NFTIFKH 68
             +FK+
Sbjct: 61 ---VFKY 61

[Close]
BLAST of Cucsa.033180 vs. TAIR10
Match: AT2G02850.1 (AT2G02850.1 plantacyanin)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 1  MGEGRGSAM-----VCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRA 60
          M +GRGSA      +  +M   +L+LQ  ++  AA YTVG +  WTFN   WPKGK FRA
Sbjct: 1  MAKGRGSASWSARAIVTLMAVSVLLLQADYV-QAATYTVGDSGIWTFNAVGWPKGKHFRA 60

[Close]
BLAST of Cucsa.033180 vs. NCBI nr
Match: gi|449464494|ref|XP_004149964.1| (PREDICTED: basic blue protein-like [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL
Sbjct: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 59

[Close]
BLAST of Cucsa.033180 vs. NCBI nr
Match: gi|659131262|ref|XP_008465594.1| (PREDICTED: basic blue protein-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          MGEGRGSAMVCVVMVC+LLMLQYS MAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL
Sbjct: 1  MGEGRGSAMVCVVMVCVLLMLQYSQMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 59

[Close]
BLAST of Cucsa.033180 vs. NCBI nr
Match: gi|593793114|ref|XP_007159596.1| (hypothetical protein PHAVU_002G250700g [Phaseolus vulgaris])

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLG 60
          MG GRGSA+V ++ +C L++  +S MAHAA YTVGG+ GWTFN   WP GKRFRAGDTL 
Sbjct: 1  MGLGRGSAVVLLISLCFLVL--HSQMAHAATYTVGGSGGWTFNTVGWPNGKRFRAGDTL- 60

Query: 61 NFTIFKH 68
             +FK+
Sbjct: 61 ---VFKY 61

[Close]
BLAST of Cucsa.033180 vs. NCBI nr
Match: gi|703127617|ref|XP_010103882.1| (Basic blue protein [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 1  MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTL 60
          MG+GR SAMV   ++ +LL+L  + +A AA YTVGGA GWTFNVA WPKGKRFRAGDTL
Sbjct: 1  MGQGRVSAMVAAALL-LLLVLSQTELARAATYTVGGAGGWTFNVAGWPKGKRFRAGDTL 58

[Close]
BLAST of Cucsa.033180 vs. NCBI nr
Match: gi|965657073|dbj|BAT73492.1| (hypothetical protein VIGAN_01098300 [Vigna angularis var. angularis])

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 1   MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLG 60
           M  GRGSA+V  + +C  L+  +SHMAHAA YTVGG+  WTFN   WPKGKRFRAGDTL 
Sbjct: 59  MALGRGSAVVLSLSLCFFLL--HSHMAHAATYTVGGSNRWTFNTVGWPKGKRFRAGDTL- 118

Query: 61  NFTIFKH 68
              +FK+
Sbjct: 119 ---VFKY 119

The following BLAST results are available for this feature:
BLAST of Cucsa.033180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BABL_ARATH2.9e-0848.44Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2[more]
BABL_LILLO3.8e-0844.12Chemocyanin OS=Lilium longiflorum PE=1 SV=1[more]
BABL_CUCSA1.5e-0780.00Basic blue protein OS=Cucumis sativus PE=1 SV=1[more]
BLAST of Cucsa.033180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC13_CUCSA1.3e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215590 PE=4 SV=1[more]
V7CQP8_PHAVU9.5e-1459.70Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G250700g PE=4 SV=1[more]
W9SBG7_9ROSA1.6e-1367.80Basic blue protein OS=Morus notabilis GN=L484_024185 PE=4 SV=1[more]
A0A0S3QYS5_PHAAN3.6e-1359.70Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G098300 PE=... [more]
A0A0L9TDX5_PHAAN3.6e-1359.70Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan564s002800 PE=4 SV=1[more]
BLAST of Cucsa.033180 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02850.11.7e-0948.44 plantacyanin[more]
BLAST of Cucsa.033180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464494|ref|XP_004149964.1|1.8e-26100.00PREDICTED: basic blue protein-like [Cucumis sativus][more]
gi|659131262|ref|XP_008465594.1|4.5e-2596.61PREDICTED: basic blue protein-like [Cucumis melo][more]
gi|593793114|ref|XP_007159596.1|1.4e-1359.70hypothetical protein PHAVU_002G250700g [Phaseolus vulgaris][more]
gi|703127617|ref|XP_010103882.1|2.3e-1367.80Basic blue protein [Morus notabilis][more]
gi|965657073|dbj|BAT73492.1|5.2e-1359.70hypothetical protein VIGAN_01098300 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.033180.1Cucsa.033180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3DG3DSA:2.60.40.420coord: 28..67
score: 2.
IPR008972CupredoxinunknownSSF49503Cupredoxinscoord: 30..59
score: 1.7
NoneNo IPR availablePANTHERPTHR33021FAMILY NOT NAMEDcoord: 2..59
score: 2.2
NoneNo IPR availablePANTHERPTHR33021:SF61SUBFAMILY NOT NAMEDcoord: 2..59
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.033180Csa3G215590Cucumber (Chinese Long) v2cgycuB003
Cucsa.033180CSPI03G18860Wild cucumber (PI 183967)cgycpiB003
Cucsa.033180CmaCh04G005120Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.033180CmoCh04G005510Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.033180Lsi05G001910Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.033180Cp4.1LG01g02130Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.033180CsaV3_3G018920Cucumber (Chinese Long) v3cgycucB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.033180Watermelon (97103) v2cgywmbB003
Cucsa.033180Melon (DHL92) v3.5.1cgymeB002
Cucsa.033180Watermelon (Charleston Gray)cgywcgB003
Cucsa.033180Watermelon (97103) v1cgywmB002
Cucsa.033180Melon (DHL92) v3.6.1cgymedB002