Cucsa.032860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.032860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	30S ribosomal protein S3, chloroplastic
Location	scaffold00429 : 2105797 .. 2105958 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATGTACAAAAAGAATTCAATTCTGGGAACCGAAAACTCAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAACCAATGAAAAAAAGCTATTGA

mRNA sequence

ATTAATGTACAAAAAGAATTCAATTCTGGGAACCGAAAACTCAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAACCAATGAAAAAAAGCTATTGA

Coding sequence (CDS)

ATTAATGTACAAAAAGAATTCAATTCTGGGAACCGAAAACTCAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAACCAATGAAAAAAAGCTATTGA

Protein sequence

INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKSY*

Homology

[Close]

BLAST of Cucsa.032860 vs. Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.9e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. Swiss-Prot
Match: RR3_GOSHI (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum GN=rps3 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-19
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE N  NRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNCMNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. Swiss-Prot
Match: RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-19
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE N  NRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNCMNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-19
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           INVQKE N  NRKLNIAITRI NPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  INVQKELNCVNRKLNIAITRISNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +N+QKE NS NRKLN+AITRI NPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 95  MNIQKELNSVNRKLNMAITRIANPYGHPNILAEFIAGQLKNRVSFRKAMKKA 146

[Close]

BLAST of Cucsa.032860 vs. TrEMBL
Match: W8E3G6_9ROSI (Ribosomal protein S3 OS=Cucumis hystrix GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.7e-20
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. TrEMBL
Match: G3ETT6_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo GN=rps3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.5e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. TrEMBL
Match: X2EYC6_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.5e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. TrEMBL
Match: X2EZ87_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.5e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. TrEMBL
Match: X2F0P5_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.5e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. TAIR10
Match: ATCG00800.1 (ATCG00800.1 structural constituent of ribosome)

HSP 1 Score: 89.0 bits (219), Expect = 9.9e-19
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE N  NRKLNIAITRI NPYG PNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. NCBI nr
Match: gi|68164842|ref|YP_247638.1| (ribosomal protein S3 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-19
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. NCBI nr
Match: gi|595645242|gb|AHM88705.1| (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. NCBI nr
Match: gi|346578230|ref|YP_004841822.1| (ribosomal protein S3 [Cucumis melo subsp. melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. NCBI nr
Match: gi|595645478|gb|AHM88937.1| (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

[Close]

BLAST of Cucsa.032860 vs. NCBI nr
Match: gi|595645302|gb|AHM88764.1| (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   INVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKPMKKS 53
           +NVQKE NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRK MKK+
Sbjct: 97  MNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKA 148

The following BLAST results are available for this feature:

BLAST of Cucsa.032860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR3_CUCSA	6.9e-22	96.15	30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1	[more]
RR3_GOSHI	3.2e-19	88.46	30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum GN=rps3 PE=3 SV=1	[more]
RR3_GOSBA	3.2e-19	88.46	30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=...	[more]
RR3_DRANE	7.1e-19	88.46	30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1	[more]
RR3_MORIN	1.2e-18	84.62	30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1	[more]

BLAST of Cucsa.032860 vs. TrEMBL


Match Name	E-value	Identity	Description
W8E3G6_9ROSI	7.7e-20	96.15	Ribosomal protein S3 OS=Cucumis hystrix GN=rps3 PE=3 SV=1	[more]
G3ETT6_CUCME	8.5e-19	92.31	30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo GN=rps3 PE=3...	[more]
X2EYC6_LAGSI	8.5e-19	92.31	30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1	[more]
X2EZ87_LAGSI	8.5e-19	92.31	30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1	[more]
X2F0P5_LAGSI	8.5e-19	92.31	30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1	[more]

BLAST of Cucsa.032860 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00800.1	9.9e-19	84.62	ATCG00800.1 structural constituent of ribosome	[more]

BLAST of Cucsa.032860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|68164842\|ref\|YP_247638.1\|	1.1e-19	96.15	ribosomal protein S3 [Cucumis sativus]	[more]
gi\|595645242\|gb\|AHM88705.1\|	1.2e-18	92.31	ribosomal protein S3 (chloroplast) [Lagenaria siceraria]	[more]
gi\|346578230\|ref\|YP_004841822.1\|	1.2e-18	92.31	ribosomal protein S3 [Cucumis melo subsp. melo]	[more]
gi\|595645478\|gb\|AHM88937.1\|	1.2e-18	92.31	ribosomal protein S3 (chloroplast) [Lagenaria siceraria]	[more]
gi\|595645302\|gb\|AHM88764.1\|	1.2e-18	92.31	ribosomal protein S3 (chloroplast) [Lagenaria siceraria]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001351	Ribosomal_S3_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.032860.1	Cucsa.032860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001351	Ribosomal protein S3, C-terminal	GENE3D	G3DSA:3.30.1140.32		coord: 23..51 score: 3.
IPR001351	Ribosomal protein S3, C-terminal	unknown	SSF54821	Ribosomal protein S3 C-terminal domain	coord: 23..51 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.032860	Cucurbita pepo (Zucchini)	cgycpeB0005
Cucsa.032860	Cucurbita pepo (Zucchini)	cgycpeB0007
Cucsa.032860	Bottle gourd (USVL1VR-Ls)	cgylsiB003
Cucsa.032860	Melon (DHL92) v3.6.1	cgymedB002
Cucsa.032860	Silver-seed gourd	carcgyB0048
Cucsa.032860	Silver-seed gourd	carcgyB0730
Cucsa.032860	Cucumber (Chinese Long) v3	cgycucB006
Cucsa.032860	Watermelon (97103) v2	cgywmbB003
Cucsa.032860	Wax gourd	cgywgoB003
Cucsa.032860	Cucurbita maxima (Rimu)	cgycmaB0007
Cucsa.032860	Cucurbita maxima (Rimu)	cgycmaB0012
Cucsa.032860	Cucurbita moschata (Rifu)	cgycmoB0006
Cucsa.032860	Cucurbita moschata (Rifu)	cgycmoB0012
Cucsa.032860	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.032860	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.032860	Melon (DHL92) v3.5.1	cgymeB002
Cucsa.032860	Watermelon (Charleston Gray)	cgywcgB003
Cucsa.032860	Watermelon (97103) v1	cgywmB002