Cucsa.017920 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.017920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Locationscaffold00252 : 150741 .. 159372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGCGCTCATCTCCCTCACTCACGAAATTACTAGCTCCTGCGCCATTGCGCTGCCCATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGGTAAGCACAGGTGAGCATCTCCATCTTCTCAGCCGCCGTTCACCCCCAATCTCTGAACTTGATCACCGACGCAGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACGTTTCTGCGACGAGTAGCTTAGGTAACAATGGTCTCTTCGTGTTTCTATTGTTTGTTCTTATTACCCAAGATCTATGTGGTTTCTATTTGGGTTTCTCACTTTGTTTTTGTTTTGGAATCAAGAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTAAGGATTTGTTTTCATGACTTTCAAACTCGTTTAAGTTCGCTTAGTTAGTCTCTATCCTTGGAAATTCTTCCATTTCAATTGAGTTTCAGAGTAATTTTCGTTTAGTTTTTATTTATGAAATTTGATCCAGGCTCGTCCGAGTAACTTTTTGTTGTATAGTTAATTTTCGGATTGAATTGAAGTATTAACAGATCAGTTTCTAACCAATGGAGCCCATATGCGTTTAGGTTGAACCGATTAGATTGTGACTTATTGACATTTGGTGAGAGCTCATTACTACTAGCTCTTGAATTAAGTTTTCGAATTAGTAAGATTAAGTTTTGATTTCAGAAAATTTCTTTAGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGGTAAGTGGCTCCTATGATGTATGACCTTAGGGCAAGTCATATATGTGTATGGAATTATTTATTGATTATCCATGAATTATTATGATTGAAATGTATGATGAATGATGATTGCATGTGTGTTGATTGACAATGTTTGTTGTTTATGATCGAGATGAGCATGCATGTATTGATAATAAATATACGTGTGTGGGACCTCATGCATGGATGTAATGACATATGCATGATTGAAAACGTTTGTGGTAGTTGCCCATTTAGTAAATTTTGGAGCTTCTGATGGCTGATGCTCAACTCCAATGATTGGTTGCCAATTACCATTAGCCAGGGAAGAGACCTCGAGGTTGCCCACATATGCACCGTAAAAGAATTGGTGGCTAGAGCTACATAGTCCATAGTCCCCTTTCCATAAATAAATGATATGATTTGTCAAGATGATTAGGTCCTACAGATGCATTTGTTGTATGTTTGTGTGTGAGCGCGTCTGTTTATGCATCTAGTTTGAGTGTAGTTTTGGGATTTAATCCTTGCCCCAAGGCTGGCCGTTAGTTTCCAAAAGGCCTCTTCCTATCCTCCCCTTCGCTTTTGTGTTTGCCATTTTTGACTGTTTCTGAAACAATTTGGCATGCTGGATTTCTTGGTTATCTTATGTTTAAGTTGCAAATTGTCACGATCTATCTTTGGATTCATTTTTTGACTTCTTTTTAAAAATTTTTTAATGCACATTTTTACAACGGTTTTGTTTTTGAATATTGGGAAATCTTGAAATTTTTGGAGATTTTGTTGTGATACTATGCTTGTCTGATCTCTTTCTTTTTCTTTTGTTGGGATCTGGTTGTTTATAGTGTTTTAGTGCACAAGATGTTTGGTTTTGGTCAAGCTCTTGGATATGAGTAATCTGTTGTATTGTGGTTATTGGATTGATTTTCTGATAAAACACTGATATAGTGTTTCTATTTTATTGATACATTCAGCAAAAATTACAATATAAAAGAACAAACAAGTAAAAGAACCGTAACCCTCTGCCCTTCCTCTCTTTCAAGGAATGTTGCAGCCCGTTATCCTCATCAAATTCCTCCTCCTTTCTTCCCTCCCCAACTTCCTATTTATAACCAACTAACCACCAACAAATCTAATTACCTTTATACCCCTACCCTATATTAATCTAGGTATCTAACATTTTCGTAACAATTCTTCCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGGTATTGGTCTAAAGTTTATTATTTTTGTGTCTAATTGTCTACCTATTTATTACCTTCGCTTTTGTTCTCTTTCAATTAATTATATACTTCTGATTTATTGTATTTGATGACCTACTTTACTATTTTCTTAAAGAGTATATGTTTATGTATTTTGTTGAACTGAGTTTATAAGACAATCTTGAAACCGTGCAAGAGATACAAAAATGATTTGTTTTAGGCATTTCATGTTCATTTTTGTAACTTTGTTTGTGAAACATCTTATGTTGTTGCTAAGAAGTATGGACACATGTCAGACACAGGTTCTTAAAACTGCTTTAAGACAAGTGTTCAACATGCAAAATTTTGTGTTCTTAAGTGTCTTTTATTTATTTGTTGTCTTTTATTAGTACAAGAGGAATTATACAATAAGCAAATAAAACAAGGAACATGAGGTGCACCCATGCATCTCAACTAGATTGACTCTTTAAGACACCCTTAGCACTCTCATCATATCCAAACAAGTTAATAAAGACAACAAATAAATGATGTACATAAGCAGGGCTAACATCAGCCTATACAACTTGAAAAGATCATAAGAAACAAAATCTTACAAGACAAGATGTTAATTAACAGCCAGTCAAGAAACAAAGAAATCTTCTAAAACTATAAGGAGCACTAAAGGTTGGGAGCCGAATCTGAAGCTTCAACAAAGAGGGAAAATGAAGACCTGCTGCCAGTTTAGTAAAATATCTTGCATAGAAAAGTCCTTAAATTGTTTCCTTAGGGAGTACCACGAAGAGGCATTCAGACGGTCGAACTCATATCTATCGAACCATAAAGAGGCTTTATTGTGGAAGACCCGCTGATTTCTCTCCAACCACAATTCCACCAAAATCGCCTTGACAGCATTGCACCAAAGCAAGGAAGCAGTTTTCATCAAAACTGGACCAATTATAATCTTTCTAACATTATTCTTGAACTATTTTTCAAAAACCCAGCTGAGATTTTAAAGGTGTGAGAGTTTACTCCAACACCTGGCAGCATAAACACATTCTAACAAAATGTGCTGGAGTTCCTCATGATAATTAAGGCAGAATGGACAGATATGTGGTGAAAGATAGTGAGTGGACAATTTCCTTTGCATAATGGATACACAATTTAAACTACCAAATAGCATAATCCATAGAGTTATACTCACCCTCCTTGGACTTTTTAGATTTCCAAAGGCATTTTTCTAGATAATGATTTAACTGAAAAAGCCTCATTAACTTCCAACAACTAGATTCTTTTATCTGCAACATCGGATAAACTTATTCTTTCTGAAGAACCCAGTAACAGTTGAAAGTCTGTGATTTCAACCTCCTTCTGCAGTGTTCGGAAATTAAGAGACCAAGAGGAAGTGGTTGTGTCCCAATGACCTAGGCACGTATCTACAGCCTCTCCTATGGATTAAGGGCAATTCTGTTATACTCTGAGCACACTTTATTGGAAGGCTCTGGAATTAAGTTGGAAGGTGCGACAATAAGGAACTCTATCATACTTTGTGCATACCTCAAAGTACAAAGTAATGATCCAAATACAACGTGACAATAAGGAACAAAAAGAAACAACCCCAAACACAGTTAAACCAAAAAGAACAAGCCCGAAATCCGAGAGAAGGATAAGAAGAACTATCAAGCCAAAATTAATTTACGTTCTTCAGCAATGGAAATGAGCTGTAGTGTCTTACATACTTGGAACCCTTTCTTTAGAGGGGTTTTGTGTTCTTGTTCTTGTATTCTTTTGGTTTTTCTCAATGAAAACAATTGTTTCTGTAAAGAATCTAACCATATCATTTGTTTAATTAATATGGTTTGACTTTTCTCATTTTGTACAGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGTACCTACTGTATTGTTCCAAGTTAATATATTTCTGTTACCATTTTTGTGGTATGTTCTATATTCTCATATCTGTAATATTTACATTTTTGGTGAACGATCTATCTTTTCTTTTCATGTTGAGCACCTTCTGTAAGTAGAATTTAACTTGAATTCTTTACTCTATGCCCTGCACTATTCCACGTTACAATTTGTTACTGACTGATGTTTAATCTTGTCTGTGACCTTTATTTCTTGCAACCTTATGTTTGCATAAGATCTCAATGTATCTAAAGTGCACTTATTTTTCAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGTTTCTAATATTTTGCTAGACATTTTCTAAGGAATTATTGAATTGAGTAAAGGAAAAGGGTTTAATTAAAAGGTACCATAAGTTAGAACATTGGAAATATTACATCATTAAATCATTGTACGTATGATTTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTTATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTGTTCATCTTGGGATATGTGTTCAATTGAATGTTTTTAATTTTTCTTCCAAGTTTAAGTCTTTATTGATGGAATTTGGTTCTGGTCTTGTATTGGCAAGTCTGTAGTCTTATTTTGTTTCCTCCCGTGTACTTTGAATTATTGAATTGAGTAAAGGAAAAGGGTCTAATTAAAAGGTACCATAAGTTAGAGCATTGGAAATATTACATCATTAAATCGTTGTACGTATTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTAATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTTTTCATCGTGGGATATGTGTTCAATTGAATTTTTTTAATTTTTCTTCCAAGTTCAAGTATTTATTGATAGAATTTGGTTCTGGTCTTGTATTGGCAAGTGAGTCTTTATTTTGTTTCCTCTCGTGTAATTTGAGCATTAGACAATTTCATTATATCAATGATTCGTAGTGAAAACACTTTTGCCGTTCCTTCTTCCTCCAATGACAGGTCACTTCCCTCTACTTCGTCAGAGTCTTTTGCCTTCATTCCCATTTCCTGTTCTGTGCCCACCAAAATCTTTTCTGGAAAAGCTCCTACTTCCAACTCTTCCTCCGCTGATCTTTCTTTGTCTTCTCTCTCATCCTCGGCCAAATTTGGGTCAAAGGCTAAGTCTAAAAAACATTGAAAATTGATTCTAGATCAGAACCTTTATTATTGGAGGCAAATTGTGCCCTTGTTCACGCCCATTCTCAATTAAACAGGCCTGATCCTCAGAGTTCTCTTCATCCTTATTTTAAATACTTAATTTTCCCTGTGCCTAATTCAAAGGTAAATTTTTTGAGAGGTTCTCCTATCCAAACTCCATTCTCCTCATTGAAAAAGAAGAGTGTATTAGATTTCGACTCTCCTTTTAGTGTGAGCTACGAGGAAGAACATATGCCGAAGTCAGCAGAGAAGGATGACTAAAGATCCTTTAGAATCTGATCTCAATACCCTGCTTCAGACAGAAGAGGATTTAATTACTGAGAAACAGGCCTCTTTATTTCCCTCACAAGGTCGTTACCGTGAAATTTCAGATCACTTGAAGTCAATTGTAGAGAAATGTGGAACTGTTTTGGTTTGAGTACAGTCTAATCTTTTTTCAGCAAATTATTTTTGATGTCTTTTTTAGTGGATCATGAGAGTTTCGTCGGATGCTGCTTTTATTTTGGCCCTTTAATGTTCTCTTGAAATTTTTTGGTTCTAGTCACTCACCCAAGATTTAAGGACTACTTGGAAGGCATATTTTTCAACAATCCTCAACTTGAAGCTGCATGGATGTTTTCTCTCCCTTGGTGTTTCCCTCCCATCCATTTTGAAGTTTCTAGTCTGCAATCTTCAGTTGTTTTCGGGCTTCTTGTTGAAAGATTTTAATTTTGCTTTGTTCTTATTTTTCTACTGTTTTGCTCAAGTTTCGTGTTCAATTCATTTGTACTTTTGTTTGCAATCACTTTTTTAGTATACTTCTTTTGTACTTTGAGCATTATTCTCTTTTATTTAATAAATAAAAGAGGCTCGTATCTGTTTAAAAAAATGGTTGGTTTTGTTTCCATTTCAAAGAAAAAAAAAGGTAAATAGAACACCTTATTTAAACAGGATCTATTCTGTAGCTTGTACAACTGCATCCTTGAGTTCTAAATATTAGGTAAATGGTGTATTCCTATATGCTTGTTTTTTTAAAAGAAAATTTCCTTATGAACCATTGTTTCACTTTCTATGACGGGTCCTAACAGGCTGCCTGTTCCTCTTCTTGTATGTTTGAAGAGGTCCATTAAGTAATTCTCACCATCAGGCTTATCTTCAAATTCTTTTTCAGTCGTTCTTATTGAAAATACTTTGTAATTGACGAGCTCTCTTAGTGATTTCATTAAGGGGCCTTTGCATATCAATCTCAGACATCATTTCAACAAAACATACTGTGACTCAAATTTATTTTATGAGATGGGGATTAATGATGTACTACATTTTTTCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGTAAGCCAGGACTCAAATTTAAGCAATCTTTGTTTATTGAACTGTAATGGAATTTACGACCTTTGTGATTTTAATTATATAAGAACTTTAGGTTCCTTGATCTGAAAGGTGGTGAATAGTTGTGAACTTTCCCAATGGATTGATAAGCCCCTTGTTTAGTTTAACTGTTCCTTAGGCAATTAGGACAAAGGGATGAAAGGCGAATGCCACGATCAGTTAACTTTATAAGGGCACCTCAGACACACTACTTAGTAACAAGTTAGAGGGGAAAGGCAAGGAAGTTGGGTGGTTCAATAATATGTTAAGATTAGGGGATGGCCAGTAGCGAATCATTCTGTAGTTTTGTTCCATTAACTTGGGTATGCAAGAGTATAGGAAAAGTCTCAAATCTCTTCCTAGGAATTTGTTCCTTCTAATTGCTATCTGAGGAACATCTATAATCCATTCTGTTCTCCATAGCAATCATTCAAATAATTTTTGTAATATTTCTCTACTTTTTATCCGACATTGTACTTATACCCTTTTCCCCTATTTGTTGGATTTTCTAGCCTGATGGTTTGGCATCTGGTGCCTTCTCCAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGGTAAACTGATGACCCATATCGTTGTTAACAAGAAGTCAACCTTTATCGCTTTATGTGTAACAAGTCACGTAACATCTCACGGCTCATCATTTATTCTGAGTCTGCAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGGTGCGGGGAGAATCTTTATCTTTTCTGCATTTGAAGCTGACTTTTTTCGAACTCTGATTGTATATTTAATGTGAGGAGTTCACAAAGTATATTCTGAAGAAAATATGACATTTTCTGCAACTAATTGATACAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGGTACAGCATCATTACCTTTTTCCAACCACATCAAATCTAGTTTTTTTATCATTAATATCTTATTTGTCAAATCCTTCTTCCTGCTTGGTTTTGGGGCTATTTTCAAATACAGCAAAATAGACCAAAATATTACAAAAATAGCAAAATATTGCAGTTTATCTACGAAGGACTGCAATAGACTATCTGTGTTCATATGTATCATGATGGACAGAGATCGTGGTTTGTTATAGATAGATTGTGATATTTTGCTATATTTGTAAATGCTTTTAGAAGTTGTCATTTAAAATAATTTCTCTTGGTTTTGACGTTATTATTTTCTTTTCTACTTTCAGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGATTTGATTCTTTGTTTCTTCCTCACTCCTTCCCCAATTTTTGTATTGTCAAGTAGAGGTTCCTTTTTAACTTAATTATTTTATTCAAACATGTGTGGTTGGGGAGATTTGAACTTTTGACCTCTTGGTCAAGAGTATATCTCTTAACCAATTGAGATCTGCTCAGGTTGGTCTTTTGATTTTCTTTGTTATTCTTTTGAACTTGTACATTCTGTAATATGTAATATATGTATATATGTGTGTGTGTATATATGTATAATATTATTTTTAAATGTAAGGAAAAAGAAATTCTCTTATTCAAACTCTAAGGTAAGGGATGTTGAAAGTTTAAAGAAGCCTGAAGGAAGGAAGTA

mRNA sequence

CTCGCGCTCATCTCCCTCACTCACGAAATTACTAGCTCCTGCGCCATTGCGCTGCCCATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGGTAAGCACAGGTGAGCATCTCCATCTTCTCAGCCGCCGTTCACCCCCAATCTCTGAACTTGATCACCGACGCAGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACGTTTCTGCGACGAGTAGCTTAGAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGATTTGATTCTTTGTTTCTTCCTCACTCCTTCCCCAATTTTTGTATTGTCAAGTAGAGGTTCCTTTTTAACTTAATTATTTTATTCAaacatgtgtggttggggagatttgaacttttgacctcttggtcaagagtatatctcttaaccaattgagatctgctCAGGTTGGTCTTTTGATTTTCTTTGTTATTCTTTTGAACTTGTACATTCTGTAATATGTAAtatatgtatatatgtgtgtgtgtatatatgtataATATTATTTTTAAATGTAAGGAAAAAGAAATTCTCTTATTCAAACTCTAAGGTAAGGGATGTTGAAAGTTTAAAGAAGCCTGAAGGAAGGAAgta

Coding sequence (CDS)

ATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

Protein sequence

MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA*
Homology
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BLAST of Cucsa.017920 vs. Swiss-Prot
Match: TFB1A_ARATH (Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis thaliana GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.2e-58
Identity = 116/205 (56.59%), Postives = 144/205 (70.24%), Query Frame = 1 

Query: 6   VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 65
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 66  PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 125
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 126 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 185
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 186 LDTKPMSDGRTNKVTFNLTPEIKYQ 211
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

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BLAST of Cucsa.017920 vs. Swiss-Prot
Match: TFB1C_ARATH (Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis thaliana GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-57
Identity = 117/205 (57.07%), Postives = 142/205 (69.27%), Query Frame = 1 

Query: 6   VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 65
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 66  PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 125
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEEPN----KLVVLTPAEQLSMA 120

Query: 126 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 185
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 186 LDTKPMSDGRTNKVTFNLTPEIKYQ 211
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

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BLAST of Cucsa.017920 vs. Swiss-Prot
Match: TF2H1_DICDI (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 122 LSKLEMELRMRCLQEDSELQKLHKQFVIGG-VLTESEFWAARKKLLEQDNSKKSKQLIGF 181
           LS+ +++ R+  LQ + EL++L++Q V    V++ES+FW +RK +L+ D+++  KQ  G 
Sbjct: 182 LSEQQIKQRVILLQSNKELRELYEQMVNKDRVISESDFWESRKSMLKNDSTRSEKQHTGM 241

Query: 182 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
            S+++ D +P S+   N V +  TP + +Q
Sbjct: 242 PSNLLADVRPSSE-TPNAVHYRFTPTVIHQ 270

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BLAST of Cucsa.017920 vs. Swiss-Prot
Match: TF2H1_MOUSE (General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 49/157 (31.21%), Postives = 74/157 (47.13%), Query Frame = 1 

Query: 52  IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 111
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 112 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNS 171
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 172 KKS-KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 208
             S KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 TSSHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 191

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BLAST of Cucsa.017920 vs. Swiss-Prot
Match: TF2H1_HUMAN (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-08
Identity = 49/158 (31.01%), Postives = 74/158 (46.84%), Query Frame = 1 

Query: 52  IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 111
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 112 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNS 171
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 172 KKS--KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 208
             S  KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 STSNHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 192

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BLAST of Cucsa.017920 vs. TrEMBL
Match: A0A0A0KYD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338430 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 9.1e-117
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF
Sbjct: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA 212
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA
Sbjct: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA 303

[Close]
BLAST of Cucsa.017920 vs. TrEMBL
Match: A0A059AF21_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Cucsa.017920 vs. TrEMBL
Match: A0A059AE27_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Cucsa.017920 vs. TrEMBL
Match: A0A059ADT0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Cucsa.017920 vs. TrEMBL
Match: A0A0D2LY16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 139/210 (66.19%), Postives = 168/210 (80.00%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           M + +V K AKYKT++KDPGTPG L MT  K +F P +P SA KLDVEFR+IKG K+TKE
Sbjct: 1   MASTHVTKRAKYKTTIKDPGTPGTLRMTFEKILFVPHNPKSAGKLDVEFRYIKGQKHTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLT +Q GS+IFEF+N+SDL  CR+ VG  LAK GE     SE+P  ++P E
Sbjct: 61  GSNKPPWLNLTNNQNGSFIFEFENYSDLQECRDFVGKVLAKGGEV----SEKPTVSYPDE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLS  EMELR++ LQEDSELQKLHKQFV+ GVLTE+EFWA RKKLL+++ SKK+KQ +GF
Sbjct: 121 QLSAAEMELRIKLLQEDSELQKLHKQFVLSGVLTETEFWATRKKLLDREVSKKTKQRLGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KS+M+ D KP +DGRTNKVTFNLTPE+  Q
Sbjct: 181 KSAMISDIKPSTDGRTNKVTFNLTPEVILQ 206

[Close]
BLAST of Cucsa.017920 vs. TAIR10
Match: AT1G55750.1 (AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 225.3 bits (573), Expect = 3.5e-59
Identity = 116/205 (56.59%), Postives = 144/205 (70.24%), Query Frame = 1 

Query: 6   VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 65
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 66  PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 125
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 126 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 185
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 186 LDTKPMSDGRTNKVTFNLTPEIKYQ 211
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

[Close]
BLAST of Cucsa.017920 vs. TAIR10
Match: AT3G61420.1 (AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-58
Identity = 117/205 (57.07%), Postives = 142/205 (69.27%), Query Frame = 1 

Query: 6   VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 65
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 66  PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 125
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEEPN----KLVVLTPAEQLSMA 120

Query: 126 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 185
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 186 LDTKPMSDGRTNKVTFNLTPEIKYQ 211
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

[Close]
BLAST of Cucsa.017920 vs. NCBI nr
Match: gi|700199330|gb|KGN54488.1| (hypothetical protein Csa_4G338430 [Cucumis sativus])

HSP 1 Score: 427.6 bits (1098), Expect = 1.3e-116
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF
Sbjct: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA 212
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA
Sbjct: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA 303

[Close]
BLAST of Cucsa.017920 vs. NCBI nr
Match: gi|778694113|ref|XP_011653743.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 3.8e-116
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF
Sbjct: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Cucsa.017920 vs. NCBI nr
Match: gi|659114894|ref|XP_008457279.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 6.1e-114
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+D+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Cucsa.017920 vs. NCBI nr
Match: gi|659114892|ref|XP_008457278.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 6.1e-114
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+D+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Cucsa.017920 vs. NCBI nr
Match: gi|1009107857|ref|XP_015881811.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Ziziphus jujuba])

HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 1 

Query: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60
           M ++ V K AKYK SVKDPGTPGVL+M E K +FRPSDPTSA+KLDVEFR IKGHK+TKE
Sbjct: 1   MSSREVIKRAKYKISVKDPGTPGVLKMNENKLLFRPSDPTSATKLDVEFRHIKGHKHTKE 60

Query: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPV------ 120
           GSNKPPWLNL  DQGGSYIFEF++FSDLH+CRE VG+ALAK GEAA+A S   V      
Sbjct: 61  GSNKPPWLNLPHDQGGSYIFEFESFSDLHICREFVGNALAKSGEAAKAASVAKVSPATKV 120

Query: 121 ----AAFPH--EQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQ 180
               +A  H  EQLS  EMELRM+ L+E+SELQKLHKQFVIGGVLTESEFWA RKKLL+ 
Sbjct: 121 ASEGSAVTHLDEQLSTTEMELRMKLLRENSELQKLHKQFVIGGVLTESEFWATRKKLLDG 180

Query: 181 DNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 211
           DN +K KQ +GFK+SM+LDTKPM+DGRTNKVTF+LTPEIKYQ
Sbjct: 181 DNYRKLKQRVGFKNSMILDTKPMTDGRTNKVTFSLTPEIKYQ 222

The following BLAST results are available for this feature:
BLAST of Cucsa.017920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB1A_ARATH6.2e-5856.59Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis tha... [more]
TFB1C_ARATH2.3e-5757.07Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis tha... [more]
TF2H1_DICDI3.4e-0834.44General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1... [more]
TF2H1_MOUSE5.9e-0831.21General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2[more]
TF2H1_HUMAN7.7e-0831.01General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1[more]
BLAST of Cucsa.017920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYD2_CUCSA9.1e-117100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338430 PE=4 SV=1[more]
A0A059AF21_EUCGR1.5e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A059AE27_EUCGR1.5e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A059ADT0_EUCGR1.5e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A0D2LY16_GOSRA1.2e-7366.19Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1[more]
BLAST of Cucsa.017920 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55750.13.5e-5956.59 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
AT3G61420.11.3e-5857.07 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
BLAST of Cucsa.017920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199330|gb|KGN54488.1|1.3e-116100.00hypothetical protein Csa_4G338430 [Cucumis sativus][more]
gi|778694113|ref|XP_011653743.1|3.8e-116100.00PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114894|ref|XP_008457279.1|6.1e-11498.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114892|ref|XP_008457278.1|6.1e-11498.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|1009107857|ref|XP_015881811.1|1.6e-8272.52PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Ziziph... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
IPR013876TFIIH_BTF_p62_N
IPR027079Tfb1/GTF2H1
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.017920.1Cucsa.017920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3DG3DSA:2.30.29.30coord: 7..101
score: 2.
IPR011993PH domain-likeunknownSSF50729PH domain-likecoord: 9..101
score: 1.3
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 21..86
score: 1.
IPR027079TFIIH subunit Tfb1/p62PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 5..207
score: 4.3
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 5..207
score: 4.3
NoneNo IPR availableunknownSSF140383BSD domain-likecoord: 120..166
score: 1.78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.017920Csa4G338430Cucumber (Chinese Long) v2cgycuB380
Cucsa.017920CSPI04G16990Wild cucumber (PI 183967)cgycpiB400
Cucsa.017920CsaV3_4G027560Cucumber (Chinese Long) v3cgycucB405
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.017920Cucurbita maxima (Rimu)cgycmaB0738
Cucsa.017920Cucurbita maxima (Rimu)cgycmaB0740
Cucsa.017920Cucurbita moschata (Rifu)cgycmoB0728
Cucsa.017920Cucurbita moschata (Rifu)cgycmoB0730
Cucsa.017920Cucurbita pepo (Zucchini)cgycpeB0693
Cucsa.017920Cucurbita pepo (Zucchini)cgycpeB0694
Cucsa.017920Silver-seed gourdcarcgyB0547