Csa4G338430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G338430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGeneral transcription factor IIH subunit; contains IPR005607 (BSD), IPR011993 (Pleckstrin homology-like domain), IPR027079 (TFIIH subunit Tfb1/p62)
LocationChr4 : 13929048 .. 13937606 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGGTAAGCACAGGTGAGCATCTCCATCTTCTCAGCCGCCGTTCACCCCCAATCTCTGAACTTGATCACCGACGCAGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACGTTTCTGCGACGAGTAGCTTAGGTAACAATGGTCTCTTCGTGTTTCTATTGTTTGTTCTTATTACCCAAGATCTATGTGGTTTCTATTTGGGTTTCTCACTTTGTTTTTGTTTTGGAATCAAGAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTAAGGATTTGTTTTCATGACTTTCAAACTCGTTTAAGTTCGCTTAGTTAGTCTCTATCCTTGGAAATTCTTCCATTTCAATTGAGTTTCAGAGTAATTTTCGTTTAGTTTTTATTTATGAAATTTGATCCAGGCTCGTCCGAGTAACTTTTTGTTGTATAGTTAATTTTCGGATTGAATTGAAGTATTAACAGATCAGTTTCTAACCAATGGAGCCCATATGCGTTTAGGTTGAACCGATTAGATTGTGACTTATTGACATTTGGTGAGAGCTCATTACTACTAGCTCTTGAATTAAGTTTTCGAATTAGTAAGATTAAGTTTTGATTTCAGAAAATTTCTTTAGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGGTAAGTGGCTCCTATGATGTATGACCTTAGGGCAAGTCATATATGTGTATGGAATTATTTATTGATTATCCATGAATTATTATGATTGAAATGTATGATGAATGATGATTGCATGTGTGTTGATTGACAATGTTTGTTGTTTATGATCGAGATGAGCATGCATGTATTGATAATAAATATACGTGTGTGGGACCTCATGCATGGATGTAATGACATATGCATGATTGAAAACGTTTGTGGTAGTTGCCCATTTAGTAAATTTTGGAGCTTCTGATGGCTGATGCTCAACTCCAATGATTGGTTGCCAATTACCATTAGCCAGGGAAGAGACCTCGAGGTTGCCCACATATGCACCGTAAAAGAATTGGTGGCTAGAGCTACATAGTCCATAGTCCCCTTTCCATAAATAAATGATATGATTTGTCAAGATGATTAGGTCCTACAGATGCATTTGTTGTATGTTTGTGTGTGAGCGCGTCTGTTTATGCATCTAGTTTGAGTGTAGTTTTGGGATTTAATCCTTGCCCCAAGGCTGGCCGTTAGTTTCCAAAAGGCCTCTTCCTATCCTCCCCTTCGCTTTTGTGTTTGCCATTTTTGACTGTTTCTGAAACAATTTGGCATGCTGGATTTCTTGGTTATCTTATGTTTAAGTTGCAAATTGTCACGATCTATCTTTGGATTCATTTTTTGACTTCTTTTTAAAAATTTTTTAATGCACATTTTTACAACGGTTTTGTTTTTGAATATTGGGAAATCTTGAAATTTTTGGAGATTTTGTTGTGATACTATGCTTGTCTGATCTCTTTCTTTTTCTTTTGTTGGGATCTGGTTGTTTATAGTGTTTTAGTGCACAAGATGTTTGGTTTTGGTCAAGCTCTTGGATATGAGTAATCTGTTGTATTGTGGTTATTGGATTGATTTTCTGATAAAACACTGATATAGTGTTTCTATTTTATTGATACATTCAGCAAAAATTACAATATAAAAGAACAAACAAGTAGTAAAAGAACCCTAACCCTCTGCCCTTCCTCTCTTTCAAGGAATGTTGCAGCCCGTTATCCTCATCAAATTCCTCCTCCTTTCTTCCCTCCCCAACTTCCTATTTATAACCAACTAACCACCAACAAATCTAATTACCTTTATACCCCTACCCTATATTAATCTAGGTATCTAACATTTTCGTAACAATTCTTCCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGGTATTGGTCTAAAGTTTATTATTTTTGTGTCTAATTGTCTACCTATTTATTACCTTCGCTTTTGTTCTCTTTCAATTAATTATATACTTCTGATTTATTGTATTTGATGACCTACTTTACTATTTTCTTAAAGAGTATATGTTTATGTATTTTGTTGAACTGAGTTTATAAGACAATCTTGAAACCGTGCAAGAGATACAAAAATGATTTGTTTTAGGCATTTCATGTTCATTTTTGTAACTTTGTTTGTGAAACATCTTATGTTGTTGCTAAGAAGTATGGACACATGTCAGACACAGGTTCTTAAAACTGCTTTAAGACAAGTGTTCAACATGCAAAATTTTGTGTTCTTAAGTGTCTTTTATTTATTTGTTGTCTTTTATTAGTACAAGAGGAATTATACAATAAGCAAATAAAACAAGGAACATGAGGTGCACCCATGCATCTCAACTAGATTGACTCTTTAAGACACCCTTAGCACTCTCATCATATCCAAACAAGTTAATAAAGACAACAAATAAATGATGTACATAAGCAGGGCTAACATCAGCCTATACAACTTGAAAAGATCATAAGAAACAAAATCTTACAAGACAAGATGTTAATTAACAGCCAGTCAAGAAACAAAGAAATCTTCTAAAACTATAAGGAGCACTAAAGGTTGGGAGCCGAATCTGAAGCTTCAACAAAGAGGGAAAATGAAGACCTGCTGCCAGTTTAGTAAAATATCTTGCATAGAAAAGTCCTTAAATTGTTTCCTTAGGGAGTACCACGAAGAGGCATTCAGACGGTCGAACTCATATCTATCGAACCATAAAGAGGCTTTATTGTGGAAGACCCGCTGATTTCTCTCCAACCACAATTCCACCAAAATCGCCTTGACAGCATTGCACCAAAGCAAGGAAGCAGTTTTCATCAAAACTGGACCAATTATAATCTTTCTAACATTATTCTTGAACTATTTTTCAAAAACCCAGCTGAGATTTTAAAGGTGTGAGAGTTTACTCCAACACCTGGCAGCATAAACACATTCTAACAAAATGTGCTGGAGTTCCTCATGATAATTAAGGCAGAATGGACAGATATGTGGTGAAAGATAGTGAGTGGACAATTTCCTTTGCATAATGGATACACAATTTAAACTACCAAATAGCATAATCCATAGAGTTATACTCACCCTCCTTGGACTTTTTAGATTTCCAAAGGCATTTTTCTAGATAATGATTTAACTGAAAAAGCCTCATTAACTTCCAACAACTAGATTCTTTTATCTGCAACATCGGATAAACTTATTCTTTCTGAAGAACCCAGTAACAGTTGAAAGTCTGTGATTTCAACCTCCTTCTGCAGTGTTCGGAAATTAAGAGACCAAGAGGAAGTGGTTGTGTCCCAATGACCTAGGCACGTATCTACAGCCTCTCCTATGGATTAAGGGCAATTCTGTTATACTCTGAGCACACTTTATTGGAAGGCTCTGGAATTAAGTTGGAAGGTGCGACAATAAGGAACTCTATCATACTTTGTGCATACCTCAAAGTACAAAGTAATGATCCAAATACAACGTGACAATAAGGAAAAAAAAGAAACAACCCCAAACACAGTTAAACCAAAAAGAACAAGCCCGAAATCCGAGAGAAGGATAAGAAGAACTATCAAGCCAAAATTAATTTACGTTCTTCAGCAATGGAAATGAGCTGTAGTGTCTTACATACTTGGAACCCTTTCTTTAGAGGGGTTTTGTGTTCTTGTTCTTGTATTCTTTTGGTTTTTCTCAATGAAAACAATTGTTTCTGTAAAGAATCTAACCATATCATTTGTTTAATTAATATGGTTTGACTTTTCTCATTTTGTACAGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGTACCTACTGTATTGTTCCAAGTTAATATATTTCTGTTACCATTTTTGTGGTATGTTCTATATTCTCATATCTGTAATATTTACATTTTTGGTGAACGATCTATCTTTTCTTTTCATGTTGAGCACCTTCTGTAAGTAGAATTTAACTTGAATTCTTTACTCTATGCCCTGCACTATTCCACGTTACAATTTGTTACTGACTGATGTTTAATCTTGTCTGTGACCTTTATTTCTTGCAACCTTATGTTTGCATAAGATCTCAATGTATCTAAAGTGCACTTATTTTTCAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGTTTCTAATATTTTGCTAGACATTTTCTAAGGAATTATTGAATTGAGTAAAGGAAAAGGGTTTAATTAAAAGGTACCATAAGTTAGAACATTGGAAATATTACATCATTAAATCATTGTACGTATGATTTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTAATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTGTTCATCTTGGGATATGTGTTCAATTGAATGTTTTTAATTTTTCTTCCAAGTTTAAGTCTTTATTGATGGAATTTGGTTCTGGTCTTGTATTGGCAAGTCTGTAGTCTTATTTTGTTTCCTCCCGTGTACTTTGAATTATTGAATTGAGTAAAGGAAAAGGGTCTAATTAAAAGGTACCATAAGTTAGAGCATTGGAAATATTACATCATTAAATCGTTGTACGTATTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTAATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTGTTCATCTTGGGATATGTGTTCAATTGAATGTTTTTAATTTTTCTTCCAAGTTTAAGTCTTTATTGATGGAATTTGGTTCTGGTCTTGTATTGGCAAGTCTGTAGTCTTATTTTGTTTCCTCCCGTGTACTTTGAATTATTGAATTGAGTAAAGGAAAAGGGTCTAATTAAAAGGTACCATAAGTTAGAGCATTGGAAATATTACATCATTAAATCGTTGTACGTATTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTAATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTTTTCATCGTGGGATATGTGTTCAATTGAATTTTTTTAATTTTTCTTCCAAGTTCAAGTATTTATTGATAGAATTTGGTTCTGGTCTTGTATTGGCAAGTGAGTCTTTATTTTGTTTCCTCTCGTGTAATTTGAGCATTAGACAATTTCATTATATCAATGATTCGTAGTGAAAACACTTTTGCCGTTCCTTCTTCCTCCAATGACAGGTCACTTCCCTCTACTTCGTCAGAGTCTTTTGCCTTCATTCCCATTTCCTGTTCTGTGCCCACCAAAATCTTTTCTGGAAAAGCTCCTACTTCCAACTCTTCCTCCGCTGATCTTTCTTTGTCTTCTCTCTCATCCTCGGCCAAATTTGGGTCAAAGGCTAAGTCTAAAAAACATTGAAAATTGATTCTAGATCAGAACCTTTATTATTGGAGGCAAATTGTGCCCTTGTTCACGCCCATTCTCAATTAAACAGGCCTGATCCTCAGAGTTCTCTTCATCCTTATTTTAAATACTTAATTTTCCCTGTGCCTAATTCAAAGGTAAATTTTTTGAGAGGTTCTCCTATCCAAACTCCATTCTCCTCATTGAAAAAGAAGAGTGTATTAGATTTCGACTCTCCTTTTAGTGTGAGCTACGAGGAAGAACATATGCCGAAGTCAGCAGAGAAGGATGACTAAAGATCCTTTAGAATCTGATCTCAATACCCTGCTTCAGACAGAAGAGGATTTAATTACTGAGAAACAGGCCTCTTTATTTCCCTCACAAGGTCGTTACCGTGAAATTTCAGATCACTTGAAGTCAATTGTAGAGAAATGTGGAACTGTTTTGGTTTGAGTACAGTCTAATCTTTTTTCAGCAAATTATTTTTGATGTCTTTTTTAGTGGATCATGAGAGTTTCGTCGGATGCTGCTTTTATTTTGGCCCTTTAATGTTCTCTTGAAATTTTTTGGTTCTAGTCACTCACCCAAGATTTAAGGACTACTTGGAAGGCATATTTTTCAACAATCCTCAACTTGAAGCTGCATGGATGTTTTCTCTCCCTTGGTGTTTCCCTCCCATCCATTTTGAAGTTTCTAGTCTGCAATCTTCAGTTGTTTTCGGGCTTCTTGTTGAAAGATTTTAATTTTGCTTTGTTCTTATTTTTCTACTGTTTTGCTCAAGTTTCGTGTTCAATTCATTTGTACTTTTGTTTGCAATCACTTTTTTAGTATACTTCTTTTGTACTTTGAGCATTATTCTCTTTTATTTAATAAATAAAAGAGGCTCGTATCTGTTTAAAAAAATGGTTGGTTTTGTTTCCATTTCAAAGAAAAAAAAAGGTAAATAGAACACCTTATTTAAACAGGATCTATTCTGTAGCTTGTACAACTGCATCCTTGAGTTCTAAATATTAGGTAAATGGTGTATTCCTATATGCTTGTTTTTTTAAAAGAAAATTTCCTTATGAACCATTGTTTCACTTTCTATGACGGGTCCTAACAGGCTGCCTGTTCCTCTTCTTGTATGTTTGAAGAGGTCCATTAAGTAATTCTCACCATCAGGCTTATCTTCAAATTCTTTTTCAGTCGTTCTTATTGAAAATACTTTGTAATTGACGAGCTCTCTTAGTGATTTCATTAAGGGGCCTTTGCATATCAATCTCAGACATCATTTCAACAAAACATACTGTGACTCAAATTTATTTTATGAGATGGGGATTAATGATGTACTACATTTTTTCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGTAAGCCAGGACTCAAATTTAAGCAATCTTTGTTTATTGAACTGTAATGGAATTTACGACCTTTGTGATTTTAATTATATAAGAACTTTAGGTTCCTTGATCTGAAAGGTGGTGAATAGTTGTGAACTTTCCCAATGGATTGATAAGCCCCTTGTTTAGTTTAACTGTTCCTTAGGCAATTAGGACAAAGGGATGAAAGGCGAATGCCACGATCAGTTAACTTTATAAGGGCACCTCAGACACACTACTTAGTAACAAGTTAGAGGGGAAAGGCAAGGAAGTTGGGTGGTTCAATAATATGTTAAGATTAGGGGATGGCCAGTAGCGAATCATTCTGTAGTTTTGTTCCATTAACTTGGGTATGCAAGAGTATAGGAAAAGTCTCAAATCTCTTCCTAGGAATTTGTTCCTTCTAATTGCTATCTGAGGAACATCTATAATCCATTCTGTTCTCCATAGCAATCATTCAAATAATTTTTGTAATATTTCTCTACTTTTTATCCGACATTGTACTTATACCCTTTTCCCCTATTTGTTGGATTTTCTAGCCTGATGGTTTGGCATCTGGTGCCTTCTCCAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGGTAAACTGATGACCCATATCGTTGTTAACAAGAAGTCAACCTTTATCGCTTTATGTGTAACAAGTCACGTAACATCTCACGGCTCATCATTTATTCTGAGTCTGCAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGGTGCGGGGAGAATCTTTATCTTTTCTGCATTTGAAGCTGACTTTTTTCGAACTCTGATTGTATATTTAATGTGAGGAGTTCACAAAGTATATTCTGAAGAAAATATGACATTTTCTGCAACTAATTGATACAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGGTACAGCATCATTACCTTTTTCCAACCACATCAAATCTAGTTTTTTTATCATTAATATCTTATTTGTCAAATCCTTCTTCCTGCTTGGTTTTGGGGCTATTTTCAAATACAGCAAAATAGACCAAAATATTACAAAAATAGCAAAATATTGCAGTTTATCTACGAAGGACTGCAATAGACTATCTGTGTTCATATGTATCATGATGGACAGAGATCGTGGTTTGTTATAGATAGATTGTGATATTTTGCTATATTTGTAAATGCTTTTAGAAGTTGTCATTTAAAATAATTTCTCTTGGTTTTGACGTTATTATTTTCTTTTCTACTTTCAGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

mRNA sequence

ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

Coding sequence (CDS)

ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACAAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

Protein sequence

MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA*
Homology
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BLAST of Csa4G338430 vs. Swiss-Prot
Match: TFB1A_ARATH (Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis thaliana GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.9e-58
Identity = 116/205 (56.59%), Postives = 142/205 (69.27%), Query Frame = 1 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 277
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

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BLAST of Csa4G338430 vs. Swiss-Prot
Match: TFB1C_ARATH (Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis thaliana GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 3.4e-57
Identity = 117/205 (57.07%), Postives = 140/205 (68.29%), Query Frame = 1 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEEPN----KLVVLTPAEQLSMA 120

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 277
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

[Close]
BLAST of Csa4G338430 vs. Swiss-Prot
Match: TF2H1_DICDI (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-08
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 1 

Query: 214 LSKLEMELRMRCLQEDSELQKLHKQFVIGG-VLTESEFWAARKKLLEQDNSKKSKQLIGF 273
           LS+ +++ R+  LQ + EL++L++Q V    V++ES+FW +RK +L+ D+++  KQ  G 
Sbjct: 182 LSEQQIKQRVILLQSNKELRELYEQMVNKDRVISESDFWESRKSMLKNDSTRSEKQHTGM 241

Query: 274 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
            S+++ D +P S+   N V +  TP + +Q
Sbjct: 242 PSNLLADVRPSSE-TPNAVHYRFTPTVIHQ 270

[Close]
BLAST of Csa4G338430 vs. Swiss-Prot
Match: TF2H1_MOUSE (General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 8.4e-08
Identity = 49/157 (31.21%), Postives = 72/157 (45.86%), Query Frame = 1 

Query: 144 IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 203
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 204 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNS 263
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 264 KKS-KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 300
             S KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 TSSHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 191

[Close]
BLAST of Csa4G338430 vs. Swiss-Prot
Match: TF2H1_HUMAN (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-07
Identity = 49/158 (31.01%), Postives = 72/158 (45.57%), Query Frame = 1 

Query: 144 IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 203
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 204 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNS 263
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 264 KKS--KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 300
             S  KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 STSNHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 192

[Close]
BLAST of Csa4G338430 vs. TrEMBL
Match: A0A0A0KYD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338430 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 3.5e-170
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 

Query: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60
           MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA
Sbjct: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60

Query: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120
           FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT
Sbjct: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120

Query: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180
           ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL
Sbjct: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180

Query: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240
           HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV
Sbjct: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240

Query: 241 IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300
           IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK
Sbjct: 241 IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300

Query: 301 YQA 304
           YQA
Sbjct: 301 YQA 303

[Close]
BLAST of Csa4G338430 vs. TrEMBL
Match: A0A059AE27_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Csa4G338430 vs. TrEMBL
Match: A0A059ADT0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Csa4G338430 vs. TrEMBL
Match: A0A059AF21_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-74
Identity = 136/210 (64.76%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           M +  V K AKYKT+VKDPGT GVL+M   +F+F P+ P SAS LDVEFRFIKGHKNTKE
Sbjct: 1   MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT DQGGSYIFEF+++ DLH CR+ VG ++ + GE   A S +  A+ P E
Sbjct: 61  GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           Q+S  E+ELR++ L+E+SELQKLHKQ VIGG+LTE+EFWA RKKLL++++S+KSKQ +GF
Sbjct: 121 QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KS+M+ D KP +DGRTNKVTF+LTPE+  Q
Sbjct: 181 KSAMISDIKPATDGRTNKVTFSLTPEVILQ 210

[Close]
BLAST of Csa4G338430 vs. TrEMBL
Match: A0A0D2N8V3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.8e-73
Identity = 139/210 (66.19%), Postives = 168/210 (80.00%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           M + +V K AKYKT++KDPGTPG L MT  K +F P +P SA KLDVEFR+IKG K+TKE
Sbjct: 1   MASTHVTKRAKYKTTIKDPGTPGTLRMTFEKILFVPHNPKSAGKLDVEFRYIKGQKHTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT +Q GS+IFEF+N+SDL  CR+ VG  LAK GE     SE+P  ++P E
Sbjct: 61  GSNKPPWLNLTNNQNGSFIFEFENYSDLQECRDFVGKVLAKGGEV----SEKPTVSYPDE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           QLS  EMELR++ LQEDSELQKLHKQFV+ GVLTE+EFWA RKKLL+++ SKK+KQ +GF
Sbjct: 121 QLSAAEMELRIKLLQEDSELQKLHKQFVLSGVLTETEFWATRKKLLDREVSKKTKQRLGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KS+M+ D KP +DGRTNKVTFNLTPE+  Q
Sbjct: 181 KSAMISDIKPSTDGRTNKVTFNLTPEVILQ 206

[Close]
BLAST of Csa4G338430 vs. TAIR10
Match: AT1G55750.1 (AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 225.3 bits (573), Expect = 5.0e-59
Identity = 116/205 (56.59%), Postives = 142/205 (69.27%), Query Frame = 1 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 277
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

[Close]
BLAST of Csa4G338430 vs. TAIR10
Match: AT3G61420.1 (AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 117/205 (57.07%), Postives = 140/205 (68.29%), Query Frame = 1 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEEPN----KLVVLTPAEQLSMA 120

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMV 277
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

[Close]
BLAST of Csa4G338430 vs. NCBI nr
Match: gi|700199330|gb|KGN54488.1| (hypothetical protein Csa_4G338430 [Cucumis sativus])

HSP 1 Score: 605.5 bits (1560), Expect = 5.0e-170
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 

Query: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60
           MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA
Sbjct: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60

Query: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120
           FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT
Sbjct: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120

Query: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180
           ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL
Sbjct: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180

Query: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240
           HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV
Sbjct: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240

Query: 241 IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300
           IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK
Sbjct: 241 IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300

Query: 301 YQA 304
           YQA
Sbjct: 301 YQA 303

[Close]
BLAST of Csa4G338430 vs. NCBI nr
Match: gi|778694113|ref|XP_011653743.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 5.5e-116
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF
Sbjct: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Csa4G338430 vs. NCBI nr
Match: gi|659114894|ref|XP_008457279.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 8.7e-114
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+D+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Csa4G338430 vs. NCBI nr
Match: gi|659114892|ref|XP_008457278.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 8.7e-114
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+D+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of Csa4G338430 vs. NCBI nr
Match: gi|1009107857|ref|XP_015881811.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Ziziphus jujuba])

HSP 1 Score: 314.3 bits (804), Expect = 2.3e-82
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 1 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           M ++ V K AKYK SVKDPGTPGVL+M E K +FRPSDPTSA+KLDVEFR IKGHK+TKE
Sbjct: 1   MSSREVIKRAKYKISVKDPGTPGVLKMNENKLLFRPSDPTSATKLDVEFRHIKGHKHTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPV------ 212
           GSNKPPWLNL  DQGGSYIFEF++FSDLH+CRE VG+ALAK GEAA+A S   V      
Sbjct: 61  GSNKPPWLNLPHDQGGSYIFEFESFSDLHICREFVGNALAKSGEAAKAASVAKVSPATKV 120

Query: 213 ----AAFPH--EQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQ 272
               +A  H  EQLS  EMELRM+ L+E+SELQKLHKQFVIGGVLTESEFWA RKKLL+ 
Sbjct: 121 ASEGSAVTHLDEQLSTTEMELRMKLLRENSELQKLHKQFVIGGVLTESEFWATRKKLLDG 180

Query: 273 DNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           DN +K KQ +GFK+SM+LDTKPM+DGRTNKVTF+LTPEIKYQ
Sbjct: 181 DNYRKLKQRVGFKNSMILDTKPMTDGRTNKVTFSLTPEIKYQ 222

The following BLAST results are available for this feature:
BLAST of Csa4G338430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB1A_ARATH8.9e-5856.59Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis tha... [more]
TFB1C_ARATH3.4e-5757.07Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis tha... [more]
TF2H1_DICDI4.9e-0834.44General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1... [more]
TF2H1_MOUSE8.4e-0831.21General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2[more]
TF2H1_HUMAN1.1e-0731.01General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1[more]
BLAST of Csa4G338430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYD2_CUCSA3.5e-170100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338430 PE=4 SV=1[more]
A0A059AE27_EUCGR2.1e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A059ADT0_EUCGR2.1e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A059AF21_EUCGR2.1e-7464.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01409 PE=4 SV=1[more]
A0A0D2N8V3_GOSRA1.8e-7366.19Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1[more]
BLAST of Csa4G338430 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55750.15.0e-5956.59 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
AT3G61420.11.9e-5857.07 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
BLAST of Csa4G338430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199330|gb|KGN54488.1|5.0e-170100.00hypothetical protein Csa_4G338430 [Cucumis sativus][more]
gi|778694113|ref|XP_011653743.1|5.5e-116100.00PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114894|ref|XP_008457279.1|8.7e-11498.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114892|ref|XP_008457278.1|8.7e-11498.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|1009107857|ref|XP_015881811.1|2.3e-8272.52PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Ziziph... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
IPR027079Tfb1/GTF2H1
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G338430.1Csa4G338430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3DG3DSA:2.30.29.30coord: 99..193
score: 5.
IPR011993PH domain-likeunknownSSF50729PH domain-likecoord: 101..193
score: 2.9
IPR027079TFIIH subunit Tfb1/p62PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 89..299
score: 2.1
NoneNo IPR availableunknownSSF140383BSD domain-likecoord: 212..258
score: 3.14

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G338430CSPI04G16990Wild cucumber (PI 183967)cpicuB181
Csa4G338430Cucsa.017920Cucumber (Gy14) v1cgycuB380
Csa4G338430CsGy4G016270Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G338430Cucurbita maxima (Rimu)cmacuB675
Csa4G338430Cucurbita maxima (Rimu)cmacuB873
Csa4G338430Cucurbita moschata (Rifu)cmocuB665
Csa4G338430Cucurbita moschata (Rifu)cmocuB860
Csa4G338430Watermelon (97103) v1cuwmB345
Csa4G338430Cucurbita pepo (Zucchini)cpecuB076
Csa4G338430Cucurbita pepo (Zucchini)cpecuB493
Csa4G338430Bottle gourd (USVL1VR-Ls)culsiB266
Csa4G338430Silver-seed gourdcarcuB0506
Csa4G338430Silver-seed gourdcarcuB0555