Cucsa.011660 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.011660
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionNADH dehydrogenase (ubiquinone)s
Locationscaffold00154 : 971396 .. 971700 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAGGGAAAGTCGGAAGTGCGCAATTTTGGATCTTTAAACTCGAAGAAGGAGAAAGAAATCAGAGCAAGCAATCTTCAATGGCCAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTTCCAATCAGTTCCGTCACGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCTTCTTCTTCTCACCACCACCATTCCAATGCATCCTCCGCCACCCATTAA

mRNA sequence

GGGAAGGGAAAGTCGGAAGTGCGCAATTTTGGATCTTTAAACTCGAAGAAGGAGAAAGAAATCAGAGCAAGCAATCTTCAATGGCCAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTTCCAATCAGTTCCGTCACGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCTTCTTCTTCTCACCACCACCATTCCAATGCATCCTCCGCCACCCATTAA

Coding sequence (CDS)

GGGAAGGGAAAGTCGGAAGTGCGCAATTTTGGATCTTTAAACTCGAAGAAGGAGAAAGAAATCAGAGCAAGCAATCTTCAATGGCCAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTTCCAATCAGTTCCGTCACGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCTTCTTCTTCTCACCACCACCATTCCAATGCATCCTCCGCCACCCATTAA

Protein sequence

EGKVGSAQFWIFKLEEGERNQSKQSSMANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSHHHHSNASSATH*
Homology
[Close]
BLAST of Cucsa.011660 vs. Swiss-Prot
Match: NDB3B_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-25
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 

Query: 30  KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
           KPLG+TGEFFRRRDEWRKHPMLSNQ RHA PGLGI + AF +YLVGEQ+YN+  +PS S 
Sbjct: 3   KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKSS 62

Query: 90  HHHSNASSATH 101
           HHH   ++ +H
Sbjct: 63  HHHQEQTAPSH 73

[Close]
BLAST of Cucsa.011660 vs. Swiss-Prot
Match: NDB3A_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis thaliana GN=At2g02510 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-21
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 30 KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
          KPLG+TGEFFRRRDEWRKHPMLSNQ RHA PG+GI + AF +YLVGEQ+Y+++ +PSS  
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQS 62

Query: 90 HH 92
           H
Sbjct: 63 SH 64

[Close]
BLAST of Cucsa.011660 vs. TrEMBL
Match: A0A0A0KR92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528700 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 27  MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 86
           MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS
Sbjct: 1   MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 87  SSHHHHSNASSATH 101
           SSHHHHSNASSATH
Sbjct: 61  SSHHHHSNASSATH 74

[Close]
BLAST of Cucsa.011660 vs. TrEMBL
Match: A0A0B0NDD3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04523 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 30  KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
           KPLGSTGEFF+RRDEWRKHPMLSNQ RHATPGLGIALVAFGIYLVGEQVYNRI +PSSSH
Sbjct: 3   KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 90  HHHSNASSATH 101
           HH   +SS +H
Sbjct: 63  HHQQQSSSHSH 73

[Close]
BLAST of Cucsa.011660 vs. TrEMBL
Match: A0A0D2QHQ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G167700 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 30  KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
           KPLGSTGEFF+RRDEWRKHPMLSNQ RHATPGLGIALVAFGIYLVGEQVYNRI +PSSSH
Sbjct: 3   KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 90  HHHSNASSATH 101
           HH   +SS +H
Sbjct: 63  HHQQQSSSHSH 73

[Close]
BLAST of Cucsa.011660 vs. TrEMBL
Match: B9S045_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1297890 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 56/66 (84.85%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 30 KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
          KPLG+TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY+++ +PSSSH
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 90 HHHSNA 96
          HH S++
Sbjct: 63 HHSSSS 68

[Close]
BLAST of Cucsa.011660 vs. TrEMBL
Match: A0A061G8N9_THECC (NADH dehydrogenase (Ubiquinone)s OS=Theobroma cacao GN=TCM_027149 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 30 KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
          KPLG TGEFFRRRDEWRKHPML NQ RHATPGLGIALVAFGIYLVGEQVYNR+ +PSSSH
Sbjct: 3  KPLGPTGEFFRRRDEWRKHPMLGNQLRHATPGLGIALVAFGIYLVGEQVYNRVYAPSSSH 62

Query: 90 H 91
          H
Sbjct: 63 H 63

[Close]
BLAST of Cucsa.011660 vs. TAIR10
Match: AT1G14450.1 (AT1G14450.1 NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-26
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 

Query: 30  KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
           KPLG+TGEFFRRRDEWRKHPMLSNQ RHA PGLGI + AF +YLVGEQ+YN+  +PS S 
Sbjct: 3   KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKSS 62

Query: 90  HHHSNASSATH 101
           HHH   ++ +H
Sbjct: 63  HHHQEQTAPSH 73

[Close]
BLAST of Cucsa.011660 vs. TAIR10
Match: AT2G02510.1 (AT2G02510.1 NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-22
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 30 KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
          KPLG+TGEFFRRRDEWRKHPMLSNQ RHA PG+GI + AF +YLVGEQ+Y+++ +PSS  
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQS 62

Query: 90 HH 92
           H
Sbjct: 63 SH 64

[Close]
BLAST of Cucsa.011660 vs. NCBI nr
Match: gi|778703796|ref|XP_011655428.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 158.3 bits (399), Expect = 7.1e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 27  MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 86
           MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS
Sbjct: 1   MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 87  SSHHHHSNASSATH 101
           SSHHHHSNASSATH
Sbjct: 61  SSHHHHSNASSATH 74

[Close]
BLAST of Cucsa.011660 vs. NCBI nr
Match: gi|659121279|ref|XP_008460580.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 155.2 bits (391), Expect = 6.0e-35
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 27  MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 86
           MANKPLGSTGEFFRRRDEWRKHPML+NQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS
Sbjct: 1   MANKPLGSTGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 87  SSHHHHSNASSATH 101
           SSHHHHS+ASSATH
Sbjct: 61  SSHHHHSDASSATH 74

[Close]
BLAST of Cucsa.011660 vs. NCBI nr
Match: gi|823224383|ref|XP_012444958.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 132.9 bits (333), Expect = 3.2e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 30  KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
           KPLGSTGEFF+RRDEWRKHPMLSNQ RHATPGLGIALVAFGIYLVGEQVYNRI +PSSSH
Sbjct: 3   KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 90  HHHSNASSATH 101
           HH   +SS +H
Sbjct: 63  HHQQQSSSHSH 73

[Close]
BLAST of Cucsa.011660 vs. NCBI nr
Match: gi|255556661|ref|XP_002519364.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-26
Identity = 56/66 (84.85%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 30 KPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 89
          KPLG+TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY+++ +PSSSH
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 90 HHHSNA 96
          HH S++
Sbjct: 63 HHSSSS 68

[Close]
BLAST of Cucsa.011660 vs. NCBI nr
Match: gi|645223435|ref|XP_008218629.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-25
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 26  SMANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSP 85
           S + K LG+TGEFFRRRDEWRKHPML+NQ RHATPGLGIALVAFG+YLVGEQVYNR+ SP
Sbjct: 3   SSSKKALGTTGEFFRRRDEWRKHPMLTNQLRHATPGLGIALVAFGVYLVGEQVYNRVISP 62

Query: 86  SS-------SHHHHSNASSATH 101
           S+       SH H ++ +SATH
Sbjct: 63  SAASSSHAHSHSHSASTTSATH 84

The following BLAST results are available for this feature:
BLAST of Cucsa.011660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDB3B_ARATH9.6e-2569.01NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis tha... [more]
NDB3A_ARATH4.9e-2170.97NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis tha... [more]
BLAST of Cucsa.011660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR92_CUCSA4.9e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528700 PE=4 SV=1[more]
A0A0B0NDD3_GOSAR2.2e-2885.92Uncharacterized protein OS=Gossypium arboreum GN=F383_04523 PE=4 SV=1[more]
A0A0D2QHQ5_GOSRA2.2e-2885.92Uncharacterized protein OS=Gossypium raimondii GN=B456_009G167700 PE=4 SV=1[more]
B9S045_RICCO2.7e-2684.85Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1297890 PE=4 SV=1[more]
A0A061G8N9_THECC8.7e-2590.16NADH dehydrogenase (Ubiquinone)s OS=Theobroma cacao GN=TCM_027149 PE=4 SV=1[more]
BLAST of Cucsa.011660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14450.15.4e-2669.01 NADH dehydrogenase (ubiquinone)s[more]
AT2G02510.12.8e-2270.97 NADH dehydrogenase (ubiquinone)s[more]
BLAST of Cucsa.011660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778703796|ref|XP_011655428.1|7.1e-36100.00PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659121279|ref|XP_008460580.1|6.0e-3597.30PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|823224383|ref|XP_012444958.1|3.2e-2885.92PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|255556661|ref|XP_002519364.1|3.9e-2684.85PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|645223435|ref|XP_008218629.1|9.6e-2570.73PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012576NDUFB3
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005747mitochondrial respiratory chain complex I
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.011660.1Cucsa.011660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012576NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3PFAMPF08122NDUF_B12coord: 41..92
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.011660Cla001879Watermelon (97103) v1cgywmB364
Cucsa.011660MELO3C022919Melon (DHL92) v3.5.1cgymeB339
Cucsa.011660CSPI05G18760Wild cucumber (PI 183967)cgycpiB296
Cucsa.011660CmaCh04G018930Cucurbita maxima (Rimu)cgycmaB0545
Cucsa.011660Lsi11G001030Bottle gourd (USVL1VR-Ls)cgylsiB317
Cucsa.011660CsaV3_5G027560Cucumber (Chinese Long) v3cgycucB300
Cucsa.011660BhiUN159G40Wax gourdcgywgoB390
Cucsa.011660Carg26172Silver-seed gourdcarcgyB0330
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.011660Cucurbita pepo (Zucchini)cgycpeB0524
Cucsa.011660Melon (DHL92) v3.6.1cgymedB334
Cucsa.011660Watermelon (97103) v2cgywmbB346
Cucsa.011660Cucurbita moschata (Rifu)cgycmoB0546
Cucsa.011660Cucumber (Chinese Long) v2cgycuB286
Cucsa.011660Watermelon (Charleston Gray)cgywcgB340