CsaV3_UNG232170 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG232170
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NAC domain-containing protein 89-like isoform X3
Location	scaffold118 : 38516 .. 38754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGTGGCTCTGATGATTTCTACTCCGACATACTAAAAGATGATATTATAAATCTGGACACTGCACCTTTGGATGGTGCTTTGGATCCTTTACCACTGATTTTCCAGAGATCAGACACAGAGAGAAGATCCCAGCAGCGAGGGAAGCGATGGTTTCGAATGGCTACCGAACCAAGGCTCCGCCAATCGAAGAATCAGATTGAAAAAGAGAGAAGCGACTGGAGGAAAGAAGCTAGAAA

mRNA sequence

GATTGTGGCTCTGATGATTTCTACTCCGACATACTAAAAGATGATATTATAAATCTGGACACTGCACCTTTGGATGGTGCTTTGGATCCTTTACCACTGATTTTCCAGAGATCAGACACAGAGAGAAGATCCCAGCAGCGAGGGAAGCGATGGTTTCGAATGGCTACCGAACCAAGGCTCCGCCAATCGAAGAATCAGATTGAAAAAGAGAGAAGCGACTGGAGGAAAGAAGCTAGAAA

Coding sequence (CDS)

GATTGTGGCTCTGATGATTTCTACTCCGACATACTAAAAGATGATATTATAAATCTGGACACTGCACCTTTGGATGGTGCTTTGGATCCTTTACCACTGATTTTCCAGAGATCAGACACAGAGAGAAGATCCCAGCAGCGAGGGAAGCGATGGTTTCGAATGGCTACCGAACCAAGGCTCCGCCAATCGAAGAATCAGATTGAAAAAGAGAGAAGCGACTGGAGGAAAGAAGCTAGAAA

Protein sequence

DCGSDDFYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQQRGKRWFRMATEPRLRQSKNQIEKERSDWRKEARX

Homology

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BLAST of CsaV3_UNG232170 vs. NCBI nr
Match: XP_004139589.1 (PREDICTED: protein NTM1-like 8 isoform X1 [Cucumis sativus] >XP_011654576.1 PREDICTED: protein NTM1-like 8 isoform X1 [Cucumis sativus] >KGN64961.1 hypothetical protein Csa_1G168870 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 7   FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQQRGKRWF 53
           FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQ  G   F
Sbjct: 225 FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQHEGSDGF 270

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BLAST of CsaV3_UNG232170 vs. NCBI nr
Match: XP_011654585.1 (PREDICTED: NAC domain-containing protein 89 isoform X2 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 7   FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQQRGKRWF 53
           FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQ  G   F
Sbjct: 185 FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQHEGSDGF 230

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BLAST of CsaV3_UNG232170 vs. NCBI nr
Match: XP_023541345.1 (LOW QUALITY PROTEIN: NAC domain-containing protein 89-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   DCGSDDFYSDILKDDIINLD-TAPLDGALDPLPLIFQRSDTERRSQQ 47
           D GSDDFYSDILKDDI+NLD +AP + A D  PL+F RSD ER+ QQ
Sbjct: 226 DYGSDDFYSDILKDDILNLDASAPYNAASDLFPLVFHRSDAERKYQQ 272

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BLAST of CsaV3_UNG232170 vs. NCBI nr
Match: XP_022967106.1 (uncharacterized protein LOC111466609 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   DCGSDDFYSDILKDDIINLD-TAPLDGALDPLPLIFQRSDTERRSQQ 47
           D GSDDFYSDILKDDI+NLD +AP + A D  PL+F RSD ER+ QQ
Sbjct: 69  DYGSDDFYSDILKDDILNLDASAPYNAASDLFPLVFHRSDGERKYQQ 115

[Close]

BLAST of CsaV3_UNG232170 vs. NCBI nr
Match: XP_022142529.1 (NAC domain-containing protein 40-like [Momordica charantia])

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 1   DCGSDDFYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQ 46
           D GSDDFY++ILKDDIINLD +      +  PL+F+RSD E+ SQ
Sbjct: 328 DYGSDDFYTEILKDDIINLDESTPHADSNLYPLVFRRSDIEKESQ 372

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BLAST of CsaV3_UNG232170 vs. TrEMBL
Match: tr|A0A0A0LYC3|A0A0A0LYC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168870 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 7   FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQQRGKRWF 53
           FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQ  G   F
Sbjct: 225 FYSDILKDDIINLDTAPLDGALDPLPLIFQRSDTERRSQHEGSDGF 270

[Close]

BLAST of CsaV3_UNG232170 vs. TrEMBL
Match: tr|A0A1S3CK82|A0A1S3CK82_CUCME (NAC domain-containing protein 89-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501742 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 19  LDTAPLDGALDPLPLIFQRSDTERRSQ 46
           LDTAP +GA DPLPLIFQRSDTERRSQ
Sbjct: 184 LDTAPFNGASDPLPLIFQRSDTERRSQ 210

[Close]

BLAST of CsaV3_UNG232170 vs. TrEMBL
Match: tr|A0A1S3CJR1|A0A1S3CJR1_CUCME (NAC domain-containing protein 89-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501742 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 19  LDTAPLDGALDPLPLIFQRSDTERRSQ 46
           LDTAP +GA DPLPLIFQRSDTERRSQ
Sbjct: 238 LDTAPFNGASDPLPLIFQRSDTERRSQ 264

[Close]

BLAST of CsaV3_UNG232170 vs. TrEMBL
Match: tr|A0A1S3CJQ8|A0A1S3CJQ8_CUCME (NAC domain-containing protein 89-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501742 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 19  LDTAPLDGALDPLPLIFQRSDTERRSQ 46
           LDTAP +GA DPLPLIFQRSDTERRSQ
Sbjct: 237 LDTAPFNGASDPLPLIFQRSDTERRSQ 263

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG232170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139589.1	4.4e-13	89.13	PREDICTED: protein NTM1-like 8 isoform X1 [Cucumis sativus] >XP_011654576.1 PRED...	[more]
XP_011654585.1	4.4e-13	89.13	PREDICTED: NAC domain-containing protein 89 isoform X2 [Cucumis sativus]	[more]
XP_023541345.1	6.2e-07	68.09	LOW QUALITY PROTEIN: NAC domain-containing protein 89-like [Cucurbita pepo subsp...	[more]
XP_022967106.1	1.1e-06	68.09	uncharacterized protein LOC111466609 [Cucurbita maxima]	[more]
XP_022142529.1	6.4e-04	57.78	NAC domain-containing protein 40-like [Momordica charantia]	[more]

BLAST of CsaV3_UNG232170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG232170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG232170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYC3\|A0A0A0LYC3_CUCSA	2.9e-13	89.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168870 PE=4 SV=1	[more]
tr\|A0A1S3CK82\|A0A1S3CK82_CUCME	9.5e-04	88.89	NAC domain-containing protein 89-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3CJR1\|A0A1S3CJR1_CUCME	9.5e-04	88.89	NAC domain-containing protein 89-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3CJQ8\|A0A1S3CJQ8_CUCME	9.5e-04	88.89	NAC domain-containing protein 89-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG232170.1	CsaV3_UNG232170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG232170	MELO3C025584	Melon (DHL92) v3.5.1	cucmeB095

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG232170	Cucumber (Gy14) v2	cgybcucB014
CsaV3_UNG232170	Wild cucumber (PI 183967)	cpicucB018
CsaV3_UNG232170	Cucumber (Chinese Long) v3	cuccucB005