CsaV3_UNG208670 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG208670
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NADH-ubiquinone oxidoreductase chain 6
Location	scaffold18_1 : 741960 .. 742477 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGCTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

mRNA sequence

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

Coding sequence (CDS)

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

Protein sequence

MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKSDFISSHDWGYSTDYA

Homology

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: YP_004849335.1 (NADH dehydrogenase subunit 6 (mitochondrion) [Cucumis sativus] >ADZ10762.1 NADH dehydrogenase subunit 6 (mitochondrion) [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AEN56128.1 (hypothetical protein (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AUD57050.1 (NADH dehydrogenase subunit 6 (mitochondrion) [Pentas lanceolata])

HSP 1 Score: 246.9 bits (629), Expect = 4.3e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AUD57051.1 (NADH dehydrogenase subunit 6 (mitochondrion) [Cephalanthus occidentalis] >AUD57053.1 NADH dehydrogenase subunit 6 (mitochondrion) [Deppea grandiflora])

HSP 1 Score: 246.9 bits (629), Expect = 4.3e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AUD57052.1 (NADH dehydrogenase subunit 6 (mitochondrion) [Cubanola domingensis] >AUD57054.1 NADH dehydrogenase subunit 6 (mitochondrion) [Guettarda scabra] >AUD57055.1 NADH dehydrogenase subunit 6 (mitochondrion) [Hillia triflora] >AUD57056.1 NADH dehydrogenase subunit 6 (mitochondrion) [Hymenodictyon parvifolium] >AUD57057.1 NADH dehydrogenase subunit 6 (mitochondrion) [Rondeletia odorata])

HSP 1 Score: 246.9 bits (629), Expect = 4.3e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR10
Match: ATMG00270.1 (NADH dehydrogenase 6)

HSP 1 Score: 243.4 bits (620), Expect = 8.6e-65
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR10
Match: AT2G07718.1 (Cytochrome b/b6 protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+  
Sbjct: 45  MILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLAT 104

Query: 61  IAVSFLFVVMMF 73
                LF++  F
Sbjct: 105 KCQLLLFLISHF 111

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR10
Match: ATMG00590.1 (Cytochrome b/b6 protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+  
Sbjct: 45  MILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLAT 104

Query: 61  IAVSFLFVVMMF 73
                LF++  F
Sbjct: 105 KCQLLLFLISHF 111

[Close]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot
Match: sp|P60498|NU6M_BRACM (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-63
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot
Match: sp|Q02500|NU6M_WHEAT (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-58
Identity = 120/130 (92.31%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPI VF +TSGLL+LLGLDF AMI PVVHIGA
Sbjct: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGA 78

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMF+IQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNE+IPLLPT RNTT
Sbjct: 79  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 138

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 139 SLRYTVYAGK 148

[Close]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot
Match: sp|P60497|NU6M_ARATH (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.3e-57
Identity = 121/130 (93.08%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSS ALVSGLMVVRAKNPVHSVLF I VF +TSGLLLLLGLDFFAMIF VV+IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot
Match: sp|P26850|NU6M_MARPO (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69
           ALVSG MV+RAKNPVHSVLF I VF NTSGLL+LLGLDFFAMIF VV++GAIAV FLFVV
Sbjct: 11  ALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVV 70

Query: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAG 129
           MM HI+I EIHE VLRYLPV GIIGLIF  EIF ++DN+ IP+LPT+ + T L YTVYAG
Sbjct: 71  MMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSATYLTYTVYAG 130

Query: 130 KSDFISSHDW 140
           K      H W
Sbjct: 131 K-----IHSW 135

[Close]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot
Match: sp|Q37626|NU6M_PROWI (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 69/118 (58.47%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 5   VLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVS 64
           + SS  L+SG +V++A+NPVHSVLF + VF N +GLL+LLGLDFFA+IF VV++GAIAV 
Sbjct: 7   IFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIAVL 66

Query: 65  FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSL 123
           FLFVVMM +I+I EI E+ LRYLPV G++G++F +EI  ++DN+ IPLL      T+L
Sbjct: 67  FLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTAL 124

[Close]

BLAST of CsaV3_UNG208670 vs. TrEMBL
Match: tr|G3EU06|G3EU06_CUCME (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TrEMBL
Match: tr|G3EIY7|G3EIY7_CUCSA (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TrEMBL
Match: tr|A0A2H4YAR6|A0A2H4YAR6_9GENT (NADH-ubiquinone oxidoreductase chain 6 OS=Rondeletia odorata OX=61944 GN=nad6 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.8e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TrEMBL
Match: tr|A0A2H4YAP9|A0A2H4YAP9_DEPGR (NADH-ubiquinone oxidoreductase chain 6 OS=Deppea grandiflora OX=43474 GN=nad6 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.8e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TrEMBL
Match: tr|A0A2H4YAP1|A0A2H4YAP1_9GENT (NADH-ubiquinone oxidoreductase chain 6 OS=Guettarda scabra OX=153753 GN=nad6 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.8e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208670 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004849335.1	1.9e-62	100.00	NADH dehydrogenase subunit 6 (mitochondrion) [Cucumis sativus] >ADZ10762.1 NADH ...	[more]
AEN56128.1	1.9e-62	100.00	hypothetical protein (mitochondrion) [Cucumis melo subsp. melo]	[more]
AUD57050.1	4.3e-62	99.23	NADH dehydrogenase subunit 6 (mitochondrion) [Pentas lanceolata]	[more]
AUD57051.1	4.3e-62	99.23	NADH dehydrogenase subunit 6 (mitochondrion) [Cephalanthus occidentalis] >AUD570...	[more]
AUD57052.1	4.3e-62	99.23	NADH dehydrogenase subunit 6 (mitochondrion) [Cubanola domingensis] >AUD57054.1 ...	[more]

BLAST of CsaV3_UNG208670 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00270.1	8.6e-65	97.69	NADH dehydrogenase 6	[more]
AT2G07718.1	1.5e-08	51.39	Cytochrome b/b6 protein	[more]
ATMG00590.1	1.5e-08	51.39	Cytochrome b/b6 protein	[more]

BLAST of CsaV3_UNG208670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P60498\|NU6M_BRACM	1.5e-63	97.69	NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=...	[more]
sp\|Q02500\|NU6M_WHEAT	4.4e-58	92.31	NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ...	[more]
sp\|P60497\|NU6M_ARATH	6.3e-57	93.08	NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE...	[more]
sp\|P26850\|NU6M_MARPO	1.7e-41	72.31	NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P...	[more]
sp\|Q37626\|NU6M_PROWI	1.5e-29	58.47	NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ...	[more]

BLAST of CsaV3_UNG208670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|G3EU06\|G3EU06_CUCME	1.3e-62	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=...	[more]
tr\|G3EIY7\|G3EIY7_CUCSA	1.3e-62	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 S...	[more]
tr\|A0A2H4YAR6\|A0A2H4YAR6_9GENT	2.8e-62	99.23	NADH-ubiquinone oxidoreductase chain 6 OS=Rondeletia odorata OX=61944 GN=nad6 PE...	[more]
tr\|A0A2H4YAP9\|A0A2H4YAP9_DEPGR	2.8e-62	99.23	NADH-ubiquinone oxidoreductase chain 6 OS=Deppea grandiflora OX=43474 GN=nad6 PE...	[more]
tr\|A0A2H4YAP1\|A0A2H4YAP1_9GENT	2.8e-62	99.23	NADH-ubiquinone oxidoreductase chain 6 OS=Guettarda scabra OX=153753 GN=nad6 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008137	NADH dehydrogenase (ubiquinone) activity

Vocabulary: **INTERPRO**
Term	Definition
IPR001457	NADH_UbQ/plastoQ_OxRdtase_su6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208670.1	CsaV3_UNG208670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.120.1200		coord: 1..130 e-value: 5.2E-20 score: 73.7
None	No IPR available	PANTHER	PTHR33269	FAMILY NOT NAMED	coord: 1..120
None	No IPR available	PANTHER	PTHR33269:SF4	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 1..120
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 13..122 e-value: 3.6E-20 score: 72.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG208670	Lsi01G010980	Bottle gourd (USVL1VR-Ls)	cuclsiB159

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None