CsaV3_7G028790 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G028790
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 18216479 .. 18221550 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGATTTTGTGCAGGCTCACTCAGCTAAAGGAAGGCTTCAGCATTTTGATGCTAATACCTGTAAATATAGTTCGTGATGATCGATTGAGCATCTCCACGACACCCTTATAATACAGGTATGTCTCTTTTTAAATCATAAAGAATATTGCTCAAATCAGTTCTTGGAAGTTTTTTTAGTAGTAAAATGTGGGTTTATTGATTATTGACGGATCTAGTGCTGTTGTGTTTTTTTTCTCTTTACTACTTACTATTTCTGAGAATTAAGTACTACAGAATGTTGTTGAAAAGCTTTTTGAAAGTTTGCATTTGTTTTCCTGAGAATGGAAATATTTCTTCAATGAGTTAGTAGAGGTATGCTTGGCTGATTTTAGAGAAGGAAAACTTAACCAAAATGGTACGTTAGAACGTAATTTTGGACAAAATCGATCCTGAAAGCATGCAGTGAAGTTTTAGACAATTAAATCATTAATTGGTCCAATGAAATGTATTAGAGGAAGAAATACGTCAAATAATTTTCCATCACTAAAAGAGATAATTTATGAGTATAATGATCTTTTTAGTATCGTAGGCACACTATCTTTTGGTTGCAGCACATCCAGTGTGTCACTTGGACTATCCTAACGTTTTTTTTACGGGGTAGGAGATTGAACCTCTAGCCTCAAAACTGATTATACATACTAATGTCGGTTGAGTCGTACACTTTTTAGCATAAATATAATCTTTTGGAGACGTTTGGGGGTGCTAAGTTATTGTTATAATCGGTGATCGTTATAGTCTGAGTTATAATAGTTTGTATGTTATAATAATTCATGTTTGAGTTGCATACTATTATACCTTAAACTATAATAACATGTACTTGTTGTACAAGTAGCCTAAGTAGAAAATAGTATGCACGATAACAAAAACAAATAGATCTGAAATAGTAATAATACAAATAAGTATTGTAAGTTATATTAGTTGTTAGAAACATTGATCATTATAATTAAAAGTTTCAAACATGAAATGAACTATAACAATACACTCCACCAACTTCAAGTTGACGACCCACAATGGTTCCTTCTTACAATTTAGTTCGAAACATAATTTGATAACTAATTTGAGAAAGTATACATTCTTCTTTAGTTACGTGTGAGTAATGACTATAAATCTCTTCATAAATGGAGAGTGGATCCATCTTTATCCTGCAAATGTACATTTTTGCTCATAATTTTTGATTGAATGTTAGACTATATGTCAATTTTTTTTACTAATTCTCACAATATTCTAAGAACTCACAAATTAATTCACTAGAAAACAGTACACAAAACTAAGTAATACATGAATAGCTTGATCAAAAATCACAAAATTTGACTCATTTTTGTTCTTCAAACAAAAACCTATTAAGAGGTAGAAGTTTGCAAAATTTTCAAGTTTAAGATAAAAGATCGCGATATTTGTCTAATTTTCAATATTTAAATTGAAAGTTGCTTAAAAATTCGATTTACTCATTTGCAAGTTTATAAGTTTATGAGAAAAATTAATTTTTATTCTTGATATTTTGTTTGGGTTAGAAGATAAAAATTTGGTCCAATTTTCTAATTAGTTATTTGGTTTAGAGATGAAATCAATTTGAATTTTATGATTTTAACATGTATATATTTTAGAAATTCAAATAATAGTTCTCATAGTTTCTAGCGCATTTATATATAATTGAATTATGTTCATTGAATTAATAGTTCTCATAGTTTCTAGCGCATTTATTAATTGAATTATGTTCATTGAATTGGGTTGATTGTGTTGGTATTAAATTTATAACGGAAAGAAACAATGAATATCTTCAAAGGAATAATGACCATCAAACTAAAACTTTCATAATTATTATATAATTGTAGGATAATTAAAGTGAAGCTTTTCAAAATTTAATAATAACATAACAATAATAAATATTATTATTATTATAATTGTAATATTGGCTAAAATATTCTAGATTGGATGGTTTATTTATTTTTACATATAAAAGGTTTTCTTTCTTTGAAAATCACATGTTTTTTTAAAAAGGGAGTTGAATTTCCAATGGGCATAAGAACCTTAAATGTTTACCCTTCAATCTCTTCCAATTCCATTTGTCGTATAAAGTACCTCAGAGAATAATAATTGAGTTCATACTCTAATTTACGTGGTTATTAACATGTATTCAATTTTATGTAAGAATTTTAAATGTAATATACATAATTCAATTTAAGAAAGATTTATACATATGTATATAGTTAAAATAAACTAATACTAAAAGGAGCTAAATAGAGGGATTTTTTTTTTTTTTGGTCAACCATATCTAGTAATGAATATTCTAGAGATTATGTGCCACAAACTAAATGAAATGTGGATGAGTTAATCTTGAAAAGGAGAAAAAGTATAATACTTTATTTCTACTTTTGTAAAACTAAAAAAATAAATATGCTTTTCCATTCAAAATTTGAATGCAACATTTTTAGCACATTTTAGTTTTAGGGAATGTGAAAAAGAAAGAGAGAAAGAAATAGGAATATCATCAAACATTATCTCAAGAGTAAGAGAAGTAACTTTTTTTTAATATGTATGTGGTGAGACTATTAATCATGTGACTTAAAAAAAAAAAAGTAAAAGTTTATATGTTAATTGGACTTCCTTAATAAATATTTTTCTTTGTAAGATGAGTGTTGAAAAAGAAAAAAAAAAAAGTAAAATATGAGCATTTACATAAATCAATACGAAAAGAAACTAATAAATAAATATATATCAATTGAACAAAGAAGAAAAAATGTTTTTCAAAAAATTTATTTTTGTGAAAATGGATAGTTTAAAATATACTTAGAAAAACTATTTTTAGTAGCTTCTAAACTCGCAATTTTTTTTCAAAATGTAATCTAAACACCTCGTAGACTTGAAACTATGCTTAAGTTTGAGTTTTGTGATTATTTTGTGATTTATGGTTTGATTGTTAAAGAAGACATATTAATACAAATATCAATATTAGTATGTACGTACAATGCTTACTATATATAAGTTTAACGGTTATAATAAAGAATATACTTTTCAGTAAAAAAAACTAAAAATTTTTTAAGAAAAAAATAAAAATGAATGAAAGAAAACAAGAAAATTGTTGTAAATTTACTATTAATTTGCTGTCTTTCAATTTCATACAATAATTTGCATTATTTTCTATTTACTATAGTTGAATTTTAGTCCAATTGTGAAAATAAGTTTTTAAGAACTATTTTGTTTAGTTCTTAAAAATATTTATAAAAAGTTTGTCATGCAAACCAAGAGATTTTAGGGGTTAGAATGAATGTTTTGAGACTTAATTTTTAAAAATTTAAAACTAAATTGTTACGACGAAAAGTCTAAAATGATTTAAATACTTCGTTTAGGTTTGCTTTATTTTCATGTATTTTAAATTTTTGTCTATTTTAGAGCTAGTTTTGTAACTATTTTAATTTTTAAATTTAAGTTCGTTGATATTATTTTTAACCTTCCAACTTTCTTCCTCTATTGTATACATCTTACCATTAATTTAGAAAACCAAATCAAGATTTAAAAACTAAAAAACGAATATGCGAATGAAAGGTAAATAAACTTAATTTTCAAAAACAAAAACTTATATCTAGATGGTTATGAGACGGAGTCTTAATGATTATACTTTTAAATACACATTTTTCTTTATTTACCAAACAAATGAACCTCTTGATTATTTTAGTATTTTTAAAACTTCAACATAAATTATTTACATTATTTTTAAAATAATAATAATATATAGATTTGTCATCACATTTTAGTAATTTTTGTGATTTGAAGTCAAAATTTTAACCTTACAAAATGGAACAGAAATGAATTGCACGTTCTTAATTGTCAATTTTCAAATGCATTATTTAGACCAAATTCAAAGTTAAAAGTAATAATTAATATTCTAATTTTTTCTCTTAATTTTTAAAGAAACCAAACCTCAACCTCTCGAATAAAAAATAGATTAATTATATATCATAATGAAAATAGAAATAACCGAATTTCCAACCTCTCAAGTTAGATTAATTATATATCATGATGAAATTATAAAAACCGAACTTTCAACCTGTCGAACGAAAAGATAGGTTAATTATAGGTTAGTTAATACTTTTAATGTTTAAATTAAGTCTTAGTTAATGTTATGTTAATGGGTTGATACAAATCTGCCACTAACAATTGTTTTTTCCCCTAATTCTCTTCTTCCTCATTATTTCATTTCTTTCCTTTTCCCTTCTTCTCCCACTTCCTAACTTAATTTAAATGAATCAATTCTTTAAATATTCTCTAACTATTTATTCTAATAATTCATTCACTGAATGAAAAAAAAAATCTTTAATTCAACTTAATTATAAGTTTTACATAATATTTAACCAACAAATAAAATATAAATATATATAATATATTTACGAAAACTCATGATTTAAATATGGATGAAACTTGTAAAGTATAAAATATAAAATTAAAATTAGGATACTATTTTCTATAATAAAATAAAGCCATCATTCAATAATTTCACACTTACCTATTATAGGGATATTTTATTAATAATATAAGAATGTTTCAAACCCTACTCAGCGGCCGACGTCTATGGTCAAATGTGGCCAAATTGAAATCCATTAATCTTTCCTAACACCATTCATTCTTATACTATAAATAATAATCTCATACATTATGTATGTTTCTATCTTCCATATTCACTTGTAAACAACATTTGAAATCCAAAAGAAATGCCTCCATTTATCAAATCTTTAATTTCTGTAGCTCTTTTGGCTCTTCTTTTGCTCTCTCGATTTCCATCCACTTCTGCTGTCAATCACAACATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGGTTTGACATCCAGTCTTTATTGTGTATGTGTATTGTTTTTGGCTTGTTGATGTGA

mRNA sequence

ATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGGTTTGACATCCAGTCTTTATTGTGTATGTGTATTGTTTTTGGCTTGTTGATGTGA

Coding sequence (CDS)

ATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGGTTTGACATCCAGTCTTTATTGTGTATGTGTATTGTTTTTGGCTTGTTGATGTGA

Protein sequence

MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTWFDIQSLLCMCIVFGLLM
Homology
[Close]
BLAST of CsaV3_7G028790 vs. NCBI nr
Match: KGN44887.1 (hypothetical protein Csa_7G394070 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTW 60
          MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMT 
Sbjct: 32 MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTC 91

Query: 61 FDI 64
          F I
Sbjct: 92 FII 94

[Close]
BLAST of CsaV3_7G028790 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1   MAPNSPIGMF-----QMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANR 60
           +AP+   G+F     Q  E  QV EN  G +YSFEQKI ++RARR+ + AEGPSPS AN 
Sbjct: 93  VAPSPLAGVFRLDTLQTAERHQVAENGIGNQYSFEQKI-RRRARRAVRRAEGPSPSSANW 152

Query: 61  SRMTWFDIQSLLCMCIVFGLLM 78
           SR + F + SLLC+C VFGL +
Sbjct: 153 SRTSSFGVGSLLCLCTVFGLFL 173

[Close]
BLAST of CsaV3_7G028790 vs. NCBI nr
Match: XP_022954099.1 (uncharacterized protein LOC111456466 [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 11  QMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTWFDIQSLLCMC 70
           Q  E  QV EN  GY+YSFEQKI ++RARR+ + AEGPSPS AN S+ + F + SLLC+C
Sbjct: 135 QTAERHQVAENGIGYQYSFEQKI-RRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLC 194

Query: 71  IVFGLLM 78
            VFGL +
Sbjct: 195 TVFGLFL 200

[Close]
BLAST of CsaV3_7G028790 vs. TrEMBL
Match: tr|A0A0A0K934|A0A0A0K934_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTW 60
          MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMT 
Sbjct: 32 MAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTC 91

Query: 61 FDI 64
          F I
Sbjct: 92 FII 94

The following BLAST results are available for this feature:
BLAST of CsaV3_7G028790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44887.15.5e-2496.83hypothetical protein Csa_7G394070 [Cucumis sativus][more]
XP_022992473.11.7e-0952.44uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima][more]
XP_022954099.12.2e-0958.21uncharacterized protein LOC111456466 [Cucurbita moschata][more]
BLAST of CsaV3_7G028790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G028790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G028790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K934|A0A0A0K934_CUCSA3.6e-2496.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G028790.1CsaV3_7G028790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G028790MELO3C016057Melon (DHL92) v3.5.1cucmeB550
CsaV3_7G028790BhiUN245G39Wax gourdcucwgoB677
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G028790Melon (DHL92) v3.6.1cucmedB538
CsaV3_7G028790Watermelon (Charleston Gray)cucwcgB548
CsaV3_7G028790Watermelon (97103) v1cucwmB593
CsaV3_7G028790Watermelon (97103) v2cucwmbB594
CsaV3_7G028790Silver-seed gourdcarcucB0128
CsaV3_7G028790Silver-seed gourdcarcucB0900
CsaV3_7G028790Cucumber (Gy14) v2cgybcucB347
CsaV3_7G028790Cucumber (Gy14) v1cgycucB563
CsaV3_7G028790Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G028790Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G028790Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G028790Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G028790Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G028790Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G028790Wild cucumber (PI 183967)cpicucB414
CsaV3_7G028790Bottle gourd (USVL1VR-Ls)cuclsiB538