CsaV3_7G028250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G028250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	classical arabinogalactan protein 26
Location	chr7 : 17798227 .. 17798530 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTACACAGCTTCCGTTTTCCCTTTCTCTTTCGCTTCGTATCCCAATGACTTCCCTACCCACCTCATTTCTTCCATCTCCGCCGCGCCCGAATTTTCTCCGTCACCAGCGCCGGCTTCAGACATTTCTCCACTCTTTCCCACTCCGGGAGACGCTACCCTTCCCCCCTCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCCGATTTTATGGACGCTGCGCCGGCGCCGGAGATGCCTCTTTCGCCCTCTCAGTCCTTGCCATTCTCTACAGCTGCTGCTCTTAACTCCG

mRNA sequence

ATGGCCTACACAGCTTCCGTTTTCCCTTTCTCTTTCGCTTCGTATCCCAATGACTTCCCTACCCACCTCATTTCTTCCATCTCCGCCGCGCCCGAATTTTCTCCGTCACCAGCGCCGGCTTCAGACATTTCTCCACTCTTTCCCACTCCGGGAGACGCTACCCTTCCCCCCTCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCCGATTTTATGGACGCTGCGCCGGCGCCGGAGATGCCTCTTTCGCCCTCTCAGTCCTTGCCATTCTCTACAGCTGCTGCTCTTAACTCCG

Coding sequence (CDS)

ATGGCCTACACAGCTTCCGTTTTCCCTTTCTCTTTCGCTTCGTATCCCAATGACTTCCCTACCCACCTCATTTCTTCCATCTCCGCCGCGCCCGAATTTTCTCCGTCACCAGCGCCGGCTTCAGACATTTCTCCACTCTTTCCCACTCCGGGAGACGCTACCCTTCCCCCCTCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCCGATTTTATGGACGCTGCGCCGGCGCCGGAGATGCCTCTTTCGCCCTCTCAGTCCTTGCCATTCTCTACAGCTGCTGCTCTTAACTCCG

Protein sequence

MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSX

Homology

[Close]

BLAST of CsaV3_7G028250 vs. NCBI nr
Match: XP_011659314.1 (PREDICTED: classical arabinogalactan protein 26 [Cucumis sativus] >KGN44830.1 hypothetical protein Csa_7G390090 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL 60
           MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL
Sbjct: 13  MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL 72

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 113

[Close]

BLAST of CsaV3_7G028250 vs. NCBI nr
Match: XP_008451434.1 (PREDICTED: classical arabinogalactan protein 26 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTH---LISSISAAPEFSPSPAPASDISPLFPTPGDATLPP 60
           MAYTAS FPF+FASYPN FPTH   + SSISAAPEFSP+PAP+SDISPLFPTPGDATLPP
Sbjct: 13  MAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISPLFPTPGDATLPP 72

Query: 61  SSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           SSL XXXXXXXXXXXXXXXXXXXXXXXX    S+PFS AAALNS
Sbjct: 73  SSLPXXXXXXXXXXXXXXXXXXXXXXXXSPTWSMPFSAAAALNS 116

[Close]

BLAST of CsaV3_7G028250 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 85/103 (82.52%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSP--SPAPASDISPLFPTPGDATLPPS 60
           MAYTAS+FPFSFASYPN FP  LISSISAAPEFSP       SDISPLFPTPG ATLPPS
Sbjct: 13  MAYTASIFPFSFASYPNHFPP-LISSISAAPEFSPXXXXXXXSDISPLFPTPGGATLPPS 72

Query: 61  SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           SL XXXXXXXXXXXXXXXXXXXXXXXXX  QSLPFS  A LNS
Sbjct: 73  SLPXXXXXXXXXXXXXXXXXXXXXXXXXPSQSLPFSATATLNS 114

[Close]

BLAST of CsaV3_7G028250 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 84/103 (81.55%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSP--SPAPASDISPLFPTPGDATLPPS 60
           MAYTAS+F FSFASYPN FP  LISSISAAPEFSP       SDISPLFPTPG ATLPPS
Sbjct: 13  MAYTASIFAFSFASYPNHFPP-LISSISAAPEFSPXXXXXXXSDISPLFPTPGGATLPPS 72

Query: 61  SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           SL XXXXXXXXXXXXXXXXXXXXXXXX   QSLPFS AA LNS
Sbjct: 73  SLPXXXXXXXXXXXXXXXXXXXXXXXXPPSQSLPFSAAATLNS 114

[Close]

BLAST of CsaV3_7G028250 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 83/103 (80.58%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSP--SPAPASDISPLFPTPGDATLPPS 60
           MAYTAS+ PFSFASYPN FP  LISSISAAPEFSP       SDI+PLFPTPG ATLPPS
Sbjct: 13  MAYTASILPFSFASYPNHFPP-LISSISAAPEFSPXXXXXXXSDIAPLFPTPGGATLPPS 72

Query: 61  SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           SL XXXXXXXXXXXXXXXXXXXXXXXX   QSLPFS AA LNS
Sbjct: 73  SLPXXXXXXXXXXXXXXXXXXXXXXXXPPSQSLPFSAAATLNS 114

[Close]

BLAST of CsaV3_7G028250 vs. TrEMBL
Match: tr|A0A0A0K510|A0A0A0K510_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL 60
           MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL
Sbjct: 13  MAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFPTPGDATLPPSSL 72

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 113

[Close]

BLAST of CsaV3_7G028250 vs. TrEMBL
Match: tr|A0A1S3BRG9|A0A1S3BRG9_CUCME (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-21
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAYTASVFPFSFASYPNDFPTH---LISSISAAPEFSPSPAPASDISPLFPTPGDATLPP 60
           MAYTAS FPF+FASYPN FPTH   + SSISAAPEFSP+PAP+SDISPLFPTPGDATLPP
Sbjct: 13  MAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISPLFPTPGDATLPP 72

Query: 61  SSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNS 102
           SSL XXXXXXXXXXXXXXXXXXXXXXXX    S+PFS AAALNS
Sbjct: 73  SSLPXXXXXXXXXXXXXXXXXXXXXXXXSPTWSMPFSAAAALNS 116

The following BLAST results are available for this feature:

BLAST of CsaV3_7G028250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659314.1	2.4e-27	100.00	PREDICTED: classical arabinogalactan protein 26 [Cucumis sativus] >KGN44830.1 hy...	[more]
XP_008451434.1	1.3e-20	83.65	PREDICTED: classical arabinogalactan protein 26 [Cucumis melo]	[more]
XP_023548939.1	5.5e-16	82.52	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991733.1	1.6e-15	81.55	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_022953817.1	2.1e-15	80.58	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]

BLAST of CsaV3_7G028250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K510\|A0A0A0K510_CUCSA	1.6e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
tr\|A0A1S3BRG9\|A0A1S3BRG9_CUCME	8.3e-21	83.65	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039346	AGP25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G028250.1	CsaV3_7G028250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	PANTHER	PTHR35725:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 23..99
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	FAMILY NOT NAMED	coord: 23..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G028250	CSPI07G16500	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G028250	Cucsa.084640	Cucumber (Gy14) v1	cgycucB087
CsaV3_7G028250	CmaCh17G011330	Cucurbita maxima (Rimu)	cmacucB0458
CsaV3_7G028250	Cp4.1LG12g05300	Cucurbita pepo (Zucchini)	cpecucB0183
CsaV3_7G028250	Cla014704	Watermelon (97103) v1	cucwmB579
CsaV3_7G028250	ClCG09G006470	Watermelon (Charleston Gray)	cucwcgB538
CsaV3_7G028250	Lsi02G023490	Bottle gourd (USVL1VR-Ls)	cuclsiB543
CsaV3_7G028250	Cla97C09G169040	Watermelon (97103) v2	cucwmbB583

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G028250	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G028250	Cucurbita maxima (Rimu)	cmacucB0462
CsaV3_7G028250	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G028250	Cucurbita moschata (Rifu)	cmocucB0455
CsaV3_7G028250	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G028250	Cucurbita pepo (Zucchini)	cpecucB0423
CsaV3_7G028250	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G028250	Melon (DHL92) v3.5.1	cucmeB538