Cla97C09G169040 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G169040
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	classical arabinogalactan protein 26
Location	Cla97Chr09 : 5328187 .. 5328594 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTACCCTCATTTCTTCCATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCGCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGTTACCCTTCCGCCGTCCTCCTTGCCTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGCTGCTACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGGTGA

mRNA sequence

ATGACTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTACCCTCATTTCTTCCATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCGCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGTTACCCTTCCGCCGTCCTCCTTGCCTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGCTGCTACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGGTGA

Coding sequence (CDS)

ATGACTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTACCCTCATTTCTTCCATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCGCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGTTACCCTTCCGCCGTCCTCCTTGCCTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGCTGCTACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGGTGA

Protein sequence

MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

Homology

[Close]

BLAST of Cla97C09G169040 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-33
Identity = 116/135 (85.93%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSXXXXXXXXSDISPLF 60
           M S FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFS XXXXXXXSDI+PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPXXXXXXXSDIAPLF 60

Query: 61  PTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGGWFWP 120
           PTPGG TLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXX  SQSLPFSAAATLNSGGW W 
Sbjct: 61  PTPGGATLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTTALAAELRR 136
           + VALT A+ AE+ R
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cla97C09G169040 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 116/135 (85.93%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSXXXXXXXXSDISPLF 60
           M S FSLYIPIFMAYTASI AFSFASYPN+FP LISSISAAPEFS XXXXXXXSDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPXXXXXXXSDISPLF 60

Query: 61  PTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGGWFWP 120
           PTPGG TLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXX  SQSLPFSAAATLNSGGW W 
Sbjct: 61  PTPGGATLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTTALAAELRR 136
           + VALT A+  E+ R
Sbjct: 121 IWVALTAAIVEEVCR 135

[Close]

BLAST of Cla97C09G169040 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 116/135 (85.93%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSXXXXXXXXSDISPLF 60
           M S FSLYIPIFMAYTASI  FSFASYPN+FP LISSISAAPEFS XXXXXXXSDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPXXXXXXXSDISPLF 60

Query: 61  PTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGGWFWP 120
           PTPGG TLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXX SQSLPFSA ATLNSGGW W 
Sbjct: 61  PTPGGATLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXPSQSLPFSATATLNSGGWCWS 120

Query: 121 VLVALTTALAAELRR 136
           + VALT A+ AE+ R
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cla97C09G169040 vs. NCBI nr
Match: XP_011659314.1 (PREDICTED: classical arabinogalactan protein 26 [Cucumis sativus] >KGN44830.1 hypothetical protein Csa_7G390090 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 109/136 (80.15%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT-LISSISAAPEFSXXXXXXXXSDISPL 60
           M S FSLYIPIFMAYTAS+  FSFASYPN FPT LISSISAAPEFS        SDISPL
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTHLISSISAAPEFS--PSPAPASDISPL 60

Query: 61  FPTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGGWFW 120
           FPTPG  TLPPSSL XXXXXXXXXXXXXXXXXXXXXXXXXX QSLPFS AA LNSGGW  
Sbjct: 61  FPTPGDATLPPSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNSGGWCC 120

Query: 121 PVLVALTTALAAELRR 136
            V VALTT L AELRR
Sbjct: 121 SVFVALTTTLVAELRR 134

[Close]

BLAST of Cla97C09G169040 vs. NCBI nr
Match: XP_008451434.1 (PREDICTED: classical arabinogalactan protein 26 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 103/139 (74.10%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSXXXXXXXXSDI 60
           M S FSLYIPIFMAYTAS   F+FASYPNYFPT    + SSISAAPEFS        SDI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFS--PAPAPSSDI 60

Query: 61  SPLFPTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGG 120
           SPLFPTPG  TLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXX  + S+PFSAAA LNS G
Sbjct: 61  SPLFPTPGDATLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXSPTWSMPFSAAAALNSVG 120

Query: 121 WFWPVLVALTTALAAELRR 136
           W   V +AL TALAAEL R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

[Close]

BLAST of Cla97C09G169040 vs. TrEMBL
Match: tr|A0A0A0K510|A0A0A0K510_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 109/136 (80.15%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT-LISSISAAPEFSXXXXXXXXSDISPL 60
           M S FSLYIPIFMAYTAS+  FSFASYPN FPT LISSISAAPEFS        SDISPL
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTHLISSISAAPEFS--PSPAPASDISPL 60

Query: 61  FPTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGGWFW 120
           FPTPG  TLPPSSL XXXXXXXXXXXXXXXXXXXXXXXXXX QSLPFS AA LNSGGW  
Sbjct: 61  FPTPGDATLPPSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLPFSTAAALNSGGWCC 120

Query: 121 PVLVALTTALAAELRR 136
            V VALTT L AELRR
Sbjct: 121 SVFVALTTTLVAELRR 134

[Close]

BLAST of Cla97C09G169040 vs. TrEMBL
Match: tr|A0A1S3BRG9|A0A1S3BRG9_CUCME (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.7e-26
Identity = 103/139 (74.10%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSXXXXXXXXSDI 60
           M S FSLYIPIFMAYTAS   F+FASYPNYFPT    + SSISAAPEFS        SDI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFS--PAPAPSSDI 60

Query: 61  SPLFPTPGGVTLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXSQSLPFSAAATLNSGG 120
           SPLFPTPG  TLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXX  + S+PFSAAA LNS G
Sbjct: 61  SPLFPTPGDATLPPSSLPXXXXXXXXXXXXXXXXXXXXXXXXSPTWSMPFSAAAALNSVG 120

Query: 121 WFWPVLVALTTALAAELRR 136
           W   V +AL TALAAEL R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

The following BLAST results are available for this feature:

BLAST of Cla97C09G169040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953817.1	3.8e-33	85.93	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]
XP_022991733.1	5.0e-33	85.93	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_023548939.1	1.5e-32	85.93	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
XP_011659314.1	1.8e-27	80.15	PREDICTED: classical arabinogalactan protein 26 [Cucumis sativus] >KGN44830.1 hy...	[more]
XP_008451434.1	1.3e-25	74.10	PREDICTED: classical arabinogalactan protein 26 [Cucumis melo]	[more]

BLAST of Cla97C09G169040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K510\|A0A0A0K510_CUCSA	1.2e-27	80.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
tr\|A0A1S3BRG9\|A0A1S3BRG9_CUCME	8.7e-26	74.10	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]

BLAST of Cla97C09G169040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G169040 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039346	AGP25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G169040.1	Cla97C09G169040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..90
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	FAMILY NOT NAMED	coord: 8..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G169040	Cla014704	Watermelon (97103) v1	wmwmbB041
Cla97C09G169040	Csa7G390090	Cucumber (Chinese Long) v2	cuwmbB560
Cla97C09G169040	ClCG09G006470	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G169040	CSPI07G16500	Wild cucumber (PI 183967)	cpiwmbB586
Cla97C09G169040	Cucsa.084640	Cucumber (Gy14) v1	cgywmbB088
Cla97C09G169040	CmaCh17G011330	Cucurbita maxima (Rimu)	cmawmbB386
Cla97C09G169040	CmoCh17G011070	Cucurbita moschata (Rifu)	cmowmbB369
Cla97C09G169040	Lsi02G023490	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G169040	CsaV3_7G028250	Cucumber (Chinese Long) v3	cucwmbB583
Cla97C09G169040	BhiUN245G1	Wax gourd	wgowmbB161

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G169040	Watermelon (97103) v2	wmbwmbB162
Cla97C09G169040	Silver-seed gourd	carwmbB0117
Cla97C09G169040	Silver-seed gourd	carwmbB0897
Cla97C09G169040	Cucurbita maxima (Rimu)	cmawmbB940
Cla97C09G169040	Cucurbita maxima (Rimu)	cmawmbB945
Cla97C09G169040	Cucurbita moschata (Rifu)	cmowmbB916
Cla97C09G169040	Cucurbita moschata (Rifu)	cmowmbB921
Cla97C09G169040	Bottle gourd (USVL1VR-Ls)	lsiwmbB032
Cla97C09G169040	Melon (DHL92) v3.6.1	medwmbB122
Cla97C09G169040	Melon (DHL92) v3.6.1	medwmbB208
Cla97C09G169040	Melon (DHL92) v3.5.1	mewmbB132
Cla97C09G169040	Melon (DHL92) v3.5.1	mewmbB223
Cla97C09G169040	Watermelon (Charleston Gray)	wcgwmbB282
Cla97C09G169040	Watermelon (97103) v1	wmwmbB419