CsaV3_7G011420 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011420
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr7 : 6228365 .. 6229163 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTAGAGGAAGATTTTCTTAGGCACACATTTCAAACTACTTGAAAAGGTAATTCTAAGATGGAAGATTACGTATGGGAGTCTTGTTCCTCTTCGTTCCTTAATTTCACAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGGTATGTAACAACTGGTTTAGTAAGGAATTTTCTGGAAATTTCAATCTGAACAGAGGGTAGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTACTGGTATATTGATAGTGGGGCAACAAACCATGTGACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

mRNA sequence

ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

Coding sequence (CDS)

ATGGGAAGCCTTCCCAAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCTTAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAAGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATATTAACACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTATTGAGCATGTTATTGTTGGAAATGGTAGTAAGTTACAAATTTCTTGCATTGGGAATTCAAATTTATCTGATGGGAAAAGCAACATAA

Protein sequence

MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPCNSNQNPTPFVTTYNTNPFATPETVLSMLLLEMVVSYKFLALGIQIYLMGKAT

Homology

[Close]

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: KGN44034.1 (hypothetical protein Csa_7G122350 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
           MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60

Query: 61  PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC 120
           PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61  PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC 120

Query: 121 NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT 173
           NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT 172

[Close]

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHXXX 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P  +      
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXXXXK--PTCQVCGKYGHSAL 113
                                         PTCQ+CGKYGHSAL
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSAL 273

[Close]

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHXXX 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P  +      
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXXXXK--PTCQVCGKYGHSAL 113
                                         PTCQ+CGKYGHSAL
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSAL 273

[Close]

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN 56
           + +VLL LDEVYNP+ VVIQGK  ISWLDMQS+LLIFEKRL+HQNSQKN  N
Sbjct: 103 ISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGN 154

[Close]

BLAST of CsaV3_7G011420 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 62
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSP 220

[Close]

BLAST of CsaV3_7G011420 vs. TrEMBL
Match: tr|A0A0A0K542|A0A0A0K542_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-50
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60
           MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ
Sbjct: 1   MGSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQ 60

Query: 61  PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC 120
           PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC
Sbjct: 61  PGNSYPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTCQVCGKYGHSALNINTPTPC 120

Query: 121 NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT 173
           NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT
Sbjct: 121 NSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKFLALGIQIYLMGKAT 172

[Close]

BLAST of CsaV3_7G011420 vs. TrEMBL
Match: tr|A0A1S4E1V2|A0A1S4E1V2_CUCME (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHXXX 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P  +      
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXXXXK--PTCQVCGKYGHSAL 113
                                         PTCQ+CGKYGHSAL
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSAL 273

[Close]

BLAST of CsaV3_7G011420 vs. TrEMBL
Match: tr|A0A1S4E1U6|A0A1S4E1U6_CUCME (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHXXX 70
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P  +      
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFA 229

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXXXXK--PTCQVCGKYGHSAL 113
                                         PTCQ+CGKYGHSAL
Sbjct: 230 LNGQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSAL 273

[Close]

BLAST of CsaV3_7G011420 vs. TrEMBL
Match: tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 4   LPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHAN 56
           + +VLL LDEVYNP+ VVIQGK  ISWLDMQS+LLIFEKRL+HQNSQKN  N
Sbjct: 103 ISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGN 154

[Close]

BLAST of CsaV3_7G011420 vs. TrEMBL
Match: tr|A0A1S4E1U9|A0A1S4E1U9_CUCME (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 11  LDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 62
           LDEVYN + VVIQGK +ISWLDMQS+LLIFEKRL+HQN+QK +  N  + P
Sbjct: 170 LDEVYNLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSP 220

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44034.1	2.0e-50	100.00	hypothetical protein Csa_7G122350 [Cucumis sativus]	[more]
XP_016902197.1	3.3e-13	46.15	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]
XP_016902203.1	3.3e-13	46.15	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
KGN65684.1	6.2e-12	76.92	hypothetical protein Csa_1G496800 [Cucumis sativus]	[more]
XP_016902204.1	1.7e-09	68.63	PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]	[more]

BLAST of CsaV3_7G011420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K542\|A0A0A0K542_CUCSA	1.3e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122350 PE=4 SV=1	[more]
tr\|A0A1S4E1V2\|A0A1S4E1V2_CUCME	2.2e-13	46.15	uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E1U6\|A0A1S4E1U6_CUCME	2.2e-13	46.15	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LXB7\|A0A0A0LXB7_CUCSA	4.1e-12	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
tr\|A0A1S4E1U9\|A0A1S4E1U9_CUCME	1.1e-09	68.63	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011420.1	CsaV3_7G011420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G011420	CSPI07G08350	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G011420	Cucsa.247860	Cucumber (Gy14) v1	cgycucB376

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011420	Silver-seed gourd	carcucB0921
CsaV3_7G011420	Silver-seed gourd	carcucB0945
CsaV3_7G011420	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011420	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011420	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011420	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011420	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011420	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011420	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011420	Bottle gourd (USVL1VR-Ls)	cuclsiB546
CsaV3_7G011420	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011420	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011420	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011420	Watermelon (97103) v1	cucwmB585
CsaV3_7G011420	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011420	Wax gourd	cucwgoB722