CSPI07G08350 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G08350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7 : 6122940 .. 6124956 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTACCGTTATTGAATGAAATAGAGAAAATTTCTCCCAAACTTGAAAACCCACAATTTCGTTCTTGGTATCAGAGCTTTGAAATGGCCAACGCTGTCTCCCTCGTCAGATCTTCAACCACTAACTTCAGTAATCCTCCTTTAAACCAATTACTAAATCAACTACCCTATGTAAAACTTGATCCTGGAAATTATTTGTTGTGCCAAACTCTAGCCCTTCCCATTCTGAAGAGTTACAAACTCGAAGGTCATTTGACAGGAGAAAATCCTTGTCCTCCAAAATTCATCACAAATTCATCCGGTGAATCACAATCTGGAATCGATGGCACTACTGAAGCCACTGGTGGAGCATCCTCAAGTTCCACTACATCTAAAAACGGTTAATCCAAAATTTGATCAATGGATTACTTCTGATTTACTTTTTTGGGTTGGATGTACAACTCAATGACACCGGAAGTGGCACTCTCAACTGATGGGGTTTAATAGAGCAAAGGACGTATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTAGAGGAAGATTTTCTTAGGCACACATTTCAAACTACTTGAAAAGGTAATTCTAAGATGGAAGATTACGTATGGGAGTCTTGTTCCTCTTCGTTCCTTAATTTCACAGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCGCAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAGGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGGTATGTAACAACTGGTTTAGTAAGGAATTTTCTGGAAATTTCAATCTGAACAGAGGGTAGAATATTAGCACTCCCACTCCATGTAACTCAAATCAGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTCTAACTGGTATATTGATAGTGGGGCAACAAACCATGTAACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTATTGAGCATGTTATTGTTGGAAACTTTAATGAGAGGTCTTCTTAGAGATGGGCTCTATCACCTCGAGAGCGTAGCTGTGATAGCTGATGATGTTTTGGAGAAAAGTGGCTACAGGAAACTACAGTTTAAGCACATAAATAAGAATGCATCGACATTTGTTTTATCTAAAAAGGCTAATGATGGTGCATCTAAAACTGTTTGGTATAGGCGTTTGGGTCATTCCACAATGCAAGTTTTGAATTATATAGCTAAGGTTTGTAATTTGCCTATTAATGGCAATGGAGATTTTATGTTTTGTGAGTCATGCCAATTGGGTAAAACACACAATCTTCCCTTCAATATTTCTCGAAGTAAACCAGCTCAATCTTTTGATCTCATTCACTCTGACTTATGGGGACCGGCTCCCTTTACATCAACCGATGACTATCGATATTACATTCTTTTTGTTGATGACTTTAGCAAGTATACTTGGATTTATCCACTCAAACATAAAAGTGTAGCCCTTGAAGCATTCAAACATTTTATTACCTATGTGAAAACACAGTTCACTAAAACAATCAAAGCCTTTCAATTTGATAATGGTGGCGAATTCATCCAAATTCATCACATGTGCAATAAAATGGGAATTGTCTCTAGACTCTCTCGTCCCTATACATCTGCCCAAAATGGTCAAGCTGAAAGGAAACATCGACATGTTACAGAAACAAGTCTCTCTCTATTGGCTCAAGCTACATTGCCTCTTAATTTTTGGTGGGATGCTTTTATAACAGCAAAATCATTGATCAATGGATTACCTACATAG

mRNA sequence

ATGAGAGTACCGTTATTGAATGAAATAGAGAAAATTTCTCCCAAACTTGAAAACCCACAATTTCGTTCTTGGTATCAGAGCTTTGAAATGGCCAACGCTGTCTCCCTCGTCAGATCTTCAACCACTAACTTCAGTAATCCTCCTTTAAACCAATTACTAAATCAACTACCCTATGTAAAACTTGATCCTGGAAATTATTTGTTGTGCCAAACTCTAGCCCTTCCCATTCTGAAGAGTTACAAACTCGAAGGTCATTTGACAGGAGAAAATCCTTGTCCTCCAAAATTCATCACAAATTCATCCGGTGAATCACAATCTGGAATCGATGGCACTACTGAAGCCACTGGTGGAGCATCCTCAAGTTCCACTACATCTAAAAACGAGCAAAGGACGTATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCGCAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAGGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTCTAACTGGTATATTGATAGTGGGGCAACAAACCATGTAACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTCTTCTTAGAGATGGGCTCTATCACCTCGAGAGCGTAGCTGTGATAGCTGATGATGTTTTGGAGAAAAGTGGCTACAGGAAACTACAGTTTAAGCACATAAATAAGAATGCATCGACATTTGTTTTATCTAAAAAGGCTAATGATGGTGCATCTAAAACTGTTTGGTATAGGCGTTTGGGTCATTCCACAATGCAAGTTTTGAATTATATAGCTAAGGTTTGTAATTTGCCTATTAATGGCAATGGAGATTTTATGTTTTGTGAGTCATGCCAATTGGGTAAAACACACAATCTTCCCTTCAATATTTCTCGAAGTAAACCAGCTCAATCTTTTGATCTCATTCACTCTGACTTATGGGGACCGGCTCCCTTTACATCAACCGATGACTATCGATATTACATTCTTTTTGTTGATGACTTTAGCAAGTATACTTGGATTTATCCACTCAAACATAAAAGTGTAGCCCTTGAAGCATTCAAACATTTTATTACCTATGTGAAAACACAGTTCACTAAAACAATCAAAGCCTTTCAATTTGATAATGGTGGCGAATTCATCCAAATTCATCACATGTGCAATAAAATGGGAATTGTCTCTAGACTCTCTCGTCCCTATACATCTGCCCAAAATGGTCAAGCTGAAAGGAAACATCGACATGTTACAGAAACAAGTCTCTCTCTATTGGCTCAAGCTACATTGCCTCTTAATTTTTGGTGGGATGCTTTTATAACAGCAAAATCATTGATCAATGGATTACCTACATAG

Coding sequence (CDS)

ATGAGAGTACCGTTATTGAATGAAATAGAGAAAATTTCTCCCAAACTTGAAAACCCACAATTTCGTTCTTGGTATCAGAGCTTTGAAATGGCCAACGCTGTCTCCCTCGTCAGATCTTCAACCACTAACTTCAGTAATCCTCCTTTAAACCAATTACTAAATCAACTACCCTATGTAAAACTTGATCCTGGAAATTATTTGTTGTGCCAAACTCTAGCCCTTCCCATTCTGAAGAGTTACAAACTCGAAGGTCATTTGACAGGAGAAAATCCTTGTCCTCCAAAATTCATCACAAATTCATCCGGTGAATCACAATCTGGAATCGATGGCACTACTGAAGCCACTGGTGGAGCATCCTCAAGTTCCACTACATCTAAAAACGAGCAAAGGACGTATGGGAAGCCTTCCCAAGGTTTATTTGGAATACAATCAAGGGTCTTATTGAGGTTAGATGAAGTTTACAACCCCGCAACTGTTGTTATTCAAGGAAAATCCAACATCTCTTGGCTGGATATGCAGTCGGAATTACTAATATTTGAAAAACGCCTTGAGCATCAGAACTCACAAAAAAATCATGCCAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATAGTAATCAATCAAATGGAAATAGTCAGCGTGGAGGTAACAACTTCCATAATAGTGGTAGTCGTGGTCCTGGCCGAGGAAGAGGAAACAAACCAACGTGCCAAGTATGTGGCAAATATGGGCACTCTGCACTGAATCCCACTCCCTTTGTCACCACTTATAATACTAATCCCTTTGCAACACCAGAGACGGTTATTGATTCTAACTGGTATATTGATAGTGGGGCAACAAACCATGTAACAGTGGACTACTCAAACTTGTCAAACCCTTCTGAATACTCAGGTCTTCTTAGAGATGGGCTCTATCACCTCGAGAGCGTAGCTGTGATAGCTGATGATGTTTTGGAGAAAAGTGGCTACAGGAAACTACAGTTTAAGCACATAAATAAGAATGCATCGACATTTGTTTTATCTAAAAAGGCTAATGATGGTGCATCTAAAACTGTTTGGTATAGGCGTTTGGGTCATTCCACAATGCAAGTTTTGAATTATATAGCTAAGGTTTGTAATTTGCCTATTAATGGCAATGGAGATTTTATGTTTTGTGAGTCATGCCAATTGGGTAAAACACACAATCTTCCCTTCAATATTTCTCGAAGTAAACCAGCTCAATCTTTTGATCTCATTCACTCTGACTTATGGGGACCGGCTCCCTTTACATCAACCGATGACTATCGATATTACATTCTTTTTGTTGATGACTTTAGCAAGTATACTTGGATTTATCCACTCAAACATAAAAGTGTAGCCCTTGAAGCATTCAAACATTTTATTACCTATGTGAAAACACAGTTCACTAAAACAATCAAAGCCTTTCAATTTGATAATGGTGGCGAATTCATCCAAATTCATCACATGTGCAATAAAATGGGAATTGTCTCTAGACTCTCTCGTCCCTATACATCTGCCCAAAATGGTCAAGCTGAAAGGAAACATCGACATGTTACAGAAACAAGTCTCTCTCTATTGGCTCAAGCTACATTGCCTCTTAATTTTTGGTGGGATGCTTTTATAACAGCAAAATCATTGATCAATGGATTACCTACATAG
Homology
[Close]
BLAST of CSPI07G08350 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.1e-29
Identity = 69/211 (32.70%), Postives = 106/211 (50.24%), Query Frame = 1 

Query: 347 ANDGASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRS 406
           A D  S  +W++R+GH + + L  +AK   +          C+ C  GK H + F  S  
Sbjct: 416 AQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSE 475

Query: 407 KPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITY 466
           +     DL++SD+ GP    S    +Y++ F+DD S+  W+Y LK K    + F+ F   
Sbjct: 476 RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHAL 535

Query: 467 VKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTET 526
           V+ +  + +K  + DNGGE+   +    C+  GI    + P T   NG AER +R + E 
Sbjct: 536 VERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEK 595

Query: 527 SLSLLAQATLPLNFWWDAFITAKSLINGLPT 556
             S+L  A LP +FW +A  TA  LIN  P+
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPS 626

[Close]
BLAST of CSPI07G08350 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-23
Identity = 66/220 (30.00%), Postives = 105/220 (47.73%), Query Frame = 1 

Query: 355 VWYRRLGH---------------STMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNL 414
           +W+ R GH               S   +LN +   C +          CE C  GK   L
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEI----------CEPCLNGKQARL 476

Query: 415 PFNISRSKP--AQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVAL 474
           PF   + K    +   ++HSD+ GP    + DD  Y+++FVD F+ Y   Y +K+KS   
Sbjct: 477 PFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVF 536

Query: 475 EAFKHFITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAE 534
             F+ F+   +  F   +     DNG E++  ++   C K GI   L+ P+T   NG +E
Sbjct: 537 SMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSE 596

Query: 535 RKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT 556
           R  R +TE + ++++ A L  +FW +A +TA  LIN +P+
Sbjct: 597 RMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPS 626

[Close]
BLAST of CSPI07G08350 vs. Swiss-Prot
Match: YP41B_YEAST (Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-P PE=5 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-12
Identity = 56/212 (26.42%), Postives = 103/212 (48.58%), Query Frame = 1 

Query: 357 YRRLGHSTMQVLNYIAKVCN----LPINGNGDFMFCESCQLGK-------THNLPFNISR 416
           ++R+GH+ +Q +    K  +    L +    +  +C++C++ K       T ++  + + 
Sbjct: 561 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 620

Query: 417 SKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKY--TWIYPLKHKSVALEAFKHF 476
            +P  S+ +   D++GP   ++ D  RY ++ VD+ ++Y  T  +  K+    L   +  
Sbjct: 621 HEPGSSWCM---DIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKN 680

Query: 477 ITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV 536
           I YV+TQF + ++    D G EF   QI       GI   L+     A NG+AER  R +
Sbjct: 681 IQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTI 740

Query: 537 TETSLSLLAQATLPLNFWWDAFITAKSLINGL 554
              + +LL Q+ L + FW  A  +A ++ N L
Sbjct: 741 VTDATTLLRQSNLRVKFWEYAVTSATNIRNCL 769

[Close]
BLAST of CSPI07G08350 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-12
Identity = 56/212 (26.42%), Postives = 103/212 (48.58%), Query Frame = 1 

Query: 357 YRRLGHSTMQVLNYIAKVCN----LPINGNGDFMFCESCQLGK-------THNLPFNISR 416
           ++R+GH+ +Q +    K  +    L +    +  +C++C++ K       T ++  + + 
Sbjct: 561 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 620

Query: 417 SKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKY--TWIYPLKHKSVALEAFKHF 476
            +P  S+ +   D++GP   ++ D  RY ++ VD+ ++Y  T  +  K+    L   +  
Sbjct: 621 HEPGSSWCM---DIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKN 680

Query: 477 ITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV 536
           I YV+TQF + ++    D G EF   QI       GI   L+     A NG+AER  R +
Sbjct: 681 IQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTI 740

Query: 537 TETSLSLLAQATLPLNFWWDAFITAKSLINGL 554
              + +LL Q+ L + FW  A  +A ++ N L
Sbjct: 741 VTDATTLLRQSNLRVKFWEYAVTSATNIRNCL 769

[Close]
BLAST of CSPI07G08350 vs. Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-11
Identity = 56/212 (26.42%), Postives = 103/212 (48.58%), Query Frame = 1 

Query: 357 YRRLGHSTMQVLNYIAKVCN----LPINGNGDFMFCESCQLGK-------THNLPFNISR 416
           ++R+GH+ +Q +    K  +    L +    +  +C++C++ K       T ++  + + 
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621

Query: 417 SKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKY--TWIYPLKHKSVALEAFKHF 476
            +P  S+ +   D++GP   ++ D  RY ++ VD+ ++Y  T  +  K+    L   +  
Sbjct: 622 HEPGSSWCM---DIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKN 681

Query: 477 ITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV 536
           I YV+TQF + ++    D G EF   QI       GI   L+     A NG+AER  R +
Sbjct: 682 IQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTI 741

Query: 537 TETSLSLLAQATLPLNFWWDAFITAKSLINGL 554
              + +LL Q+ L + FW  A  +A ++ N L
Sbjct: 742 ITDATTLLRQSNLRVKFWEYAVTSATNIRNYL 770

[Close]
BLAST of CSPI07G08350 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 111/203 (54.68%), Postives = 142/203 (69.95%), Query Frame = 1 

Query: 353 KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSF 412
           K  W+R+LGH   +VLN + K+CN+  +   +F FCE+CQ GK HNLPF  S S   +  
Sbjct: 364 KETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPL 423

Query: 413 DLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFT 472
           DL+HSD+WGPAP +S   ++YY+LF+DD+S++TWIYPLK KS   +AF  F   V+ QF 
Sbjct: 424 DLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFN 483

Query: 473 KTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQA 532
           K IK  Q D GGEF  +  +  K GI  R S PYTSAQNG+AERKHRHV E+ L+LLAQA
Sbjct: 484 KRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQA 543

Query: 533 TLPLNFWWDAFITAKSLINGLPT 556
            +PL++WW+AF TA  LIN LPT
Sbjct: 544 KMPLHYWWEAFSTAVFLINRLPT 566

[Close]
BLAST of CSPI07G08350 vs. TrEMBL
Match: A0A0A0K542_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G122350 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 9.2e-60
Identity = 125/144 (86.81%), Postives = 127/144 (88.19%), Query Frame = 1 

Query: 141 GIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 200
           G   +VLLRLDEVYNP TVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP
Sbjct: 2   GSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 61

Query: 201 GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL--------- 260
           GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGR NKPTCQVCGKYGHSAL         
Sbjct: 62  GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPCN 121

Query: 261 ---NPTPFVTTYNTNPFATPETVI 273
              NPTPFVTTYNTNPFATPETV+
Sbjct: 122 SNQNPTPFVTTYNTNPFATPETVL 145

[Close]
BLAST of CSPI07G08350 vs. TrEMBL
Match: A0A151QNR2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_047568 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 105/203 (51.72%), Postives = 140/203 (68.97%), Query Frame = 1 

Query: 353 KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSF 412
           K  W+RRLGH   + L+ + K CN+ ++ +  F FCE+CQ GK H LPF  S S   + F
Sbjct: 29  KESWHRRLGHPNNKFLDRVLKSCNVKLSPSDHFNFCEACQYGKMHFLPFKTSSSHAKEIF 88

Query: 413 DLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFT 472
           +L+H+D+WGPAP TS   ++YY+ F+DDFS++TWIYPLKHKS   +AF  F    +  F 
Sbjct: 89  ELVHTDVWGPAPVTSPSGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAENLFN 148

Query: 473 KTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQA 532
           K IK  Q D GGE+  + +   + GI  R+S PYTS QNG+AERKHRH+TE SL+LLAQA
Sbjct: 149 KRIKTIQCDGGGEYKTVQNHAIEAGIQFRMSCPYTSQQNGRAERKHRHITEFSLTLLAQA 208

Query: 533 TLPLNFWWDAFITAKSLINGLPT 556
            +PL++WW+AF TA  LIN LP+
Sbjct: 209 KMPLHYWWEAFSTAVYLINRLPS 231

[Close]
BLAST of CSPI07G08350 vs. TrEMBL
Match: A5B979_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009554 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.3e-57
Identity = 163/463 (35.21%), Postives = 230/463 (49.68%), Query Frame = 1 

Query: 143 QSRVLLRLDEV---YNPATVVIQGKSN-ISWLDMQSELLIFEKRLEHQNS-------QKN 202
           Q +V+  LD +   YN     I  + + IS   + S LL+FE RLE Q+S         N
Sbjct: 174 QDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLVFEHRLEQQSSIEQFSPISAN 233

Query: 203 HANNDARQPG----------NSYPHNSNQSNGNSQRGG----NNFHNSGSRGPGRGRGNK 262
           +A++   + G          N  P+ SN +   S RGG    N  HNS S         K
Sbjct: 234 YASSSNSRGGGRRYNGGRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNS-------SEK 293

Query: 263 PTCQVCGKYGHS----------------ALNPTPFVTTYNTNPFATPETVIDSN------ 322
           P CQ+CGK+G++                + N +P   +  +NP + P  V  SN      
Sbjct: 294 PQCQLCGKFGYTVQICYHRFDISYQSSQSSNTSP---SNASNPNSIPAMVASSNYLADDT 353

Query: 323 WYIDSGATNHVTVDYSNLSNPSEYSGLLRDGLYHLESVAVIADDVLEKSGYRKLQFKHIN 382
           WY+DSGA++H+T    NL++ S Y+G  +  + ++ S  ++  +V               
Sbjct: 354 WYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNVISYKLLEGEVFN------------- 413

Query: 383 KNASTFVLSKKANDGASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFM---FCESCQ 442
              S F +    N     ++   RLGH++  ++  I + CN+    N + +    C SCQ
Sbjct: 414 ---SKFCI----NPLEPISMAIERLGHASTDIVTQIMQSCNVSFEKNKNTVCSTVCSSCQ 473

Query: 443 LGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKH 502
           L K+H LP ++S S  ++  +L+H DLWGPAP  ST   RY+ LF+DD+S+YTW YPL+ 
Sbjct: 474 LAKSHRLPTHLSLSCASKPLELVHXDLWGPAPVKSTSGARYFXLFLDDYSRYTWFYPLQT 533

Query: 503 KSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNG 556
           K  AL  FK F   V+ QF   IK  Q DNGGEF        +  I  R S PY S QNG
Sbjct: 534 KDQALPVFKKFKLQVENQFDAKIKCLQXDNGGEFRSFKTFLQQTXIFHRFSXPYNSTQNG 593

[Close]
BLAST of CSPI07G08350 vs. TrEMBL
Match: A5B3T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023485 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.9e-53
Identity = 151/457 (33.04%), Postives = 217/457 (47.48%), Query Frame = 1 

Query: 154 YNPATVVIQGKS-NISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGN---SYPHNSN 213
           YN     I  +  NIS   + S LL FE  LE Q+S +  + N A    N       N  
Sbjct: 41  YNAVVTAINIRDDNISLEAIHSILLAFEHHLEQQSSIEQMSANYASSSNNRGGGRKFNGG 100

Query: 214 QSNGNSQRGGNNFHNSGSRGPGRGRG--------NKPTCQVCGKYGHSA----------- 273
           +  G +    N  +    RG   G+G         KP CQ+CGK+GH+A           
Sbjct: 101 RGQGYAPNNNNYTYRGHGRGGRNGQGGRQNSNPSEKPQCQLCGKFGHTAQICYHXFDISF 160

Query: 274 ----LNPTPFVTTYNTNPF-----ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSG 333
                  +P +   N N       ++  +  D +WY+D GA++H+T +  N ++ S Y+G
Sbjct: 161 QGGQTITSPSLNNGNQNNIXAMVASSSNSPADESWYLDFGASHHLTQNLGNXTSTSPYTG 220

Query: 334 LLR-------DGLYHLES----------VAVIADDVLEKSGYR------KLQFKHINKNA 393
             R       + L    S            V+A   LE   Y+      K  +  IN NA
Sbjct: 221 TDRVTIGNDNNALIEFHSNVFFVKDRHTKMVLAQGKLENGLYKFPMFSNKKPYSSIN-NA 280

Query: 394 STFVLSKKANDGASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHN 453
           S F     +       +W+ RLGH+   +++ +   CN+  +       C  CQL K+H 
Sbjct: 281 SAFHSHFXSTVENKAELWHNRLGHAASDIVSKVMNTCNV-ASRKYKSTVCFDCQLAKSHR 340

Query: 454 LPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALE 513
           LP  +S     +S +L+++D+WGPA   ST + +Y+ILFVDD+S+YTW Y L+ K   L 
Sbjct: 341 LPTQLSNFHAFKSLELVYTDIWGPASVKSTFEAKYFILFVDDYSRYTWFYSLQTKDQXLP 400

Query: 514 AFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKH 556
            FK F   ++ QF   IK  Q DNGGEF         +GI  R S PY S QNG+ ERKH
Sbjct: 401 IFKRFKLQMENQFDTKIKCLQXDNGGEFXSFMSFLQAVGIAHRFSYPYNSTQNGRVERKH 460

[Close]
BLAST of CSPI07G08350 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-08
Identity = 27/96 (28.12%), Postives = 42/96 (43.75%), Query Frame = 1 

Query: 335 NKNASTFVLSKKANDGASKT---------VWYRRLGHSTMQVLNYIAKVCNLPINGNGDF 394
           N++ S ++L      G S           +W+ RL H + + +  + K   L  +     
Sbjct: 42  NRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSL 101

Query: 395 MFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWG 422
            FCE C  GKTH + F+  +       D +HSDLWG
Sbjct: 102 KFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

[Close]
BLAST of CSPI07G08350 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 259.2 bits (661), Expect = 1.6e-65
Identity = 163/404 (40.35%), Postives = 218/404 (53.96%), Query Frame = 1 

Query: 150 LDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSN 209
           LD  YNP  V +  + N++W+D+Q++LL FE R+E  N+  N + N +    +     SN
Sbjct: 176 LDADYNPVVVKLSDQINLNWVDLQAQLLAFENRMEQLNNFSNLSMNASANLASQTHFRSN 235

Query: 210 QSNGNSQRGGNNFHNSGSRGPGRGRG-NKPTCQVCGKYGHSALNP-TPFVTTY------- 269
           +S       G+NF     RG GRGRG +KPTCQVC K GH+ +     F  +Y       
Sbjct: 236 KSGTRGNWRGSNF-----RG-GRGRGRSKPTCQVCNKIGHTTVQCFYRFDKSYTCSNHYA 295

Query: 270 ------NTNPF-ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSE------YSGLLRDGL 329
                 N + F A+P    D  WY DSGA NHVT     L + SE        G ++DGL
Sbjct: 296 ENNKQENHSAFIASPYHGQDYEWYFDSGANNHVTHQNEKLQDLSESNGNALLKGKVKDGL 355

Query: 330 YHLESVAVIADDVLEKSGYRKLQFKHINKNASTFVLSKKANDGASKTVWYRRLGHSTMQV 389
           Y L S                     +NK+ S   +S K N       W+R+LGH   +V
Sbjct: 356 YQLSSAN-----------------SQVNKD-SCIYMSVKEN-------WHRKLGHPNNKV 415

Query: 390 LNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTS 449
           L  + K CN+  + N  F+ CE+CQ GK H LPF  S S   +  DLIHS +WGPAP  S
Sbjct: 416 LEKVLKNCNVKTSSNDHFLLCEACQFGKLHLLPFTSSYSHAKEPLDLIHSGVWGPAPILS 475

Query: 450 TDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFI 509
             +++YY+ F+DDFS++TWI+PLK K   + AF  F   V+ QF+K IK  Q D GGE+ 
Sbjct: 476 PSNFKYYVHFIDDFSRFTWIFPLKQKPETVHAFTQFKNMVENQFSKKIKILQCDGGGEYK 535

Query: 510 QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQ 532
            +  +  + GI  R+S PYTS QNG+AERKHRHV E  L+LLAQ
Sbjct: 536 PVQKIAIESGIQFRMSCPYTSQQNGRAERKHRHVAELGLTLLAQ 548

[Close]
BLAST of CSPI07G08350 vs. NCBI nr
Match: gi|1012339207|gb|KYP50444.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 241.1 bits (614), Expect = 4.6e-60
Identity = 111/203 (54.68%), Postives = 142/203 (69.95%), Query Frame = 1 

Query: 353 KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSF 412
           K  W+R+LGH   +VLN + K+CN+  +   +F FCE+CQ GK HNLPF  S S   +  
Sbjct: 364 KETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPL 423

Query: 413 DLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFT 472
           DL+HSD+WGPAP +S   ++YY+LF+DD+S++TWIYPLK KS   +AF  F   V+ QF 
Sbjct: 424 DLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFN 483

Query: 473 KTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQA 532
           K IK  Q D GGEF  +  +  K GI  R S PYTSAQNG+AERKHRHV E+ L+LLAQA
Sbjct: 484 KRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQA 543

Query: 533 TLPLNFWWDAFITAKSLINGLPT 556
            +PL++WW+AF TA  LIN LPT
Sbjct: 544 KMPLHYWWEAFSTAVFLINRLPT 566

[Close]
BLAST of CSPI07G08350 vs. NCBI nr
Match: gi|700188801|gb|KGN44034.1| (hypothetical protein Csa_7G122350 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59
Identity = 125/144 (86.81%), Postives = 127/144 (88.19%), Query Frame = 1 

Query: 141 GIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 200
           G   +VLLRLDEVYNP TVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP
Sbjct: 2   GSLPKVLLRLDEVYNPLTVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQP 61

Query: 201 GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL--------- 260
           GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGR NKPTCQVCGKYGHSAL         
Sbjct: 62  GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRRNKPTCQVCGKYGHSALNINTPTPCN 121

Query: 261 ---NPTPFVTTYNTNPFATPETVI 273
              NPTPFVTTYNTNPFATPETV+
Sbjct: 122 SNQNPTPFVTTYNTNPFATPETVL 145

[Close]
BLAST of CSPI07G08350 vs. NCBI nr
Match: gi|1012318522|gb|KYP31892.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 105/203 (51.72%), Postives = 140/203 (68.97%), Query Frame = 1 

Query: 353 KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSF 412
           K  W+RRLGH   + L+ + K CN+ ++ +  F FCE+CQ GK H LPF  S S   + F
Sbjct: 29  KESWHRRLGHPNNKFLDRVLKSCNVKLSPSDHFNFCEACQYGKMHFLPFKTSSSHAKEIF 88

Query: 413 DLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFT 472
           +L+H+D+WGPAP TS   ++YY+ F+DDFS++TWIYPLKHKS   +AF  F    +  F 
Sbjct: 89  ELVHTDVWGPAPVTSPSGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAENLFN 148

Query: 473 KTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQA 532
           K IK  Q D GGE+  + +   + GI  R+S PYTS QNG+AERKHRH+TE SL+LLAQA
Sbjct: 149 KRIKTIQCDGGGEYKTVQNHAIEAGIQFRMSCPYTSQQNGRAERKHRHITEFSLTLLAQA 208

Query: 533 TLPLNFWWDAFITAKSLINGLPT 556
            +PL++WW+AF TA  LIN LP+
Sbjct: 209 KMPLHYWWEAFSTAVYLINRLPS 231

[Close]
BLAST of CSPI07G08350 vs. NCBI nr
Match: gi|147838575|emb|CAN69851.1| (hypothetical protein VITISV_009554 [Vitis vinifera])

HSP 1 Score: 231.5 bits (589), Expect = 3.6e-57
Identity = 163/463 (35.21%), Postives = 231/463 (49.89%), Query Frame = 1 

Query: 143 QSRVLLRLDEV---YNPATVVIQGKSN-ISWLDMQSELLIFEKRLEHQNS-------QKN 202
           Q +V+  LD +   YN     I  + + IS   + S LL+FE RLE Q+S         N
Sbjct: 174 QDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLVFEHRLEQQSSIEQFSPISAN 233

Query: 203 HANNDARQPG----------NSYPHNSNQSNGNSQRGG----NNFHNSGSRGPGRGRGNK 262
           +A++   + G          N  P+ SN +   S RGG    N  HNS S         K
Sbjct: 234 YASSSNSRGGGRRYNGGRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNS-------SEK 293

Query: 263 PTCQVCGKYGHS----------------ALNPTPFVTTYNTNPFATPETVIDSN------ 322
           P CQ+CGK+G++                + N +P   +  +NP + P  V  SN      
Sbjct: 294 PQCQLCGKFGYTVQICYHRFDISYQSSQSSNTSP---SNASNPNSIPAMVASSNYLADDT 353

Query: 323 WYIDSGATNHVTVDYSNLSNPSEYSGLLRDGLYHLESVAVIADDVLEKSGYRKLQFKHIN 382
           WY+DSGA++H+T    NL++ S Y+G  +  + ++ S  ++  +V               
Sbjct: 354 WYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNVISYKLLEGEVFN------------- 413

Query: 383 KNASTFVLSKKANDGASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFM---FCESCQ 442
              S F +    N     ++   RLGH++  ++  I + CN+    N + +    C SCQ
Sbjct: 414 ---SKFCI----NPLEPISMAIERLGHASTDIVTQIMQSCNVSFEKNKNTVCSTVCSSCQ 473

Query: 443 LGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKH 502
           L K+H LP ++S S  ++  +L+H DLWGPAP  ST   RY++LF+DD+S+YTW YPL+ 
Sbjct: 474 LAKSHRLPTHLSLSCASKPLELVHXDLWGPAPVKSTSGARYFJLFLDDYSRYTWFYPLQT 533

Query: 503 KSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNG 556
           K  AL  FK F   V+ QF   IK  Q DNGGEF        +  I  R S PY S QNG
Sbjct: 534 KDQALPVFKKFKLQVENQFDAKIKCLQXDNGGEFRSFKTFLQQTXIFHRFSXPYNSTQNG 593

The following BLAST results are available for this feature:
BLAST of CSPI07G08350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC7.1e-2932.70Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME1.5e-2330.00Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YP41B_YEAST7.9e-1226.42Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YH41B_YEAST7.9e-1226.42Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YJ41B_YEAST1.3e-1126.42Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CSPI07G08350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151S6M8_CAJCA3.2e-6054.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A0A0K542_CUCSA9.2e-6086.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G122350 PE=4 SV=1[more]
A0A151QNR2_CAJCA1.1e-5751.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A5B979_VITVI7.3e-5735.21Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009554 PE=4 SV=1[more]
A5B3T3_VITVI4.9e-5333.04Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023485 PE=4 SV=1[more]
BLAST of CSPI07G08350 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00300.19.6e-0828.13ATMG00300.1 Gag-Pol-related retrotransposon family protein[more]
BLAST of CSPI07G08350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|828332633|ref|XP_004513130.2|1.6e-6540.35PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum][more]
gi|1012339207|gb|KYP50444.1|4.6e-6054.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|700188801|gb|KGN44034.1|1.3e-5986.81hypothetical protein Csa_7G122350 [Cucumis sativus][more]
gi|1012318522|gb|KYP31892.1|1.6e-5751.72Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|147838575|emb|CAN69851.1|3.6e-5735.21hypothetical protein VITISV_009554 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
IPR025724GAG-pre-integrase_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G08350.1CSPI07G08350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 410..522
score: 4.6
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 404..555
score: 18
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 405..543
score: 1.1
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 407..554
score: 8.65
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 330..395
score: 4.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 144..310
score: 1.2E-90coord: 353..555
score: 1.2
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 353..555
score: 1.2E-90coord: 144..310
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G08350Csa7G122350Cucumber (Chinese Long) v2cpicuB354
CSPI07G08350CsaV3_7G011420Cucumber (Chinese Long) v3cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G08350Wax gourdcpiwgoB709
CSPI07G08350Cucumber (Gy14) v1cgycpiB370
CSPI07G08350Cucurbita maxima (Rimu)cmacpiB041
CSPI07G08350Cucurbita maxima (Rimu)cmacpiB504
CSPI07G08350Cucurbita moschata (Rifu)cmocpiB031
CSPI07G08350Cucurbita moschata (Rifu)cmocpiB495
CSPI07G08350Melon (DHL92) v3.5.1cpimeB530
CSPI07G08350Watermelon (Charleston Gray)cpiwcgB548
CSPI07G08350Watermelon (97103) v1cpiwmB579
CSPI07G08350Cucurbita pepo (Zucchini)cpecpiB590
CSPI07G08350Cucurbita pepo (Zucchini)cpecpiB798
CSPI07G08350Bottle gourd (USVL1VR-Ls)cpilsiB526
CSPI07G08350Melon (DHL92) v3.6.1cpimedB533
CSPI07G08350Cucumber (Gy14) v2cgybcpiB332
CSPI07G08350Silver-seed gourdcarcpiB0918
CSPI07G08350Silver-seed gourdcarcpiB0944
CSPI07G08350Watermelon (97103) v2cpiwmbB591