CsaV3_7G011330 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011330
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 6070271 .. 6070543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

mRNA sequence

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Coding sequence (CDS)

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Protein sequence

EMIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELELIFQRHNDEDMKHLVTTEIFSLENSATGT

Homology

[Close]

BLAST of CsaV3_7G011330 vs. NCBI nr
Match: KGN44023.1 (hypothetical protein Csa_7G109800 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 2  MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE 61
          MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE 60

Query: 62 LIFQRHNDEDMKHLVTTEIFSLENSATGT 91
          LIFQRHNDEDMKHLVTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

[Close]

BLAST of CsaV3_7G011330 vs. TrEMBL
Match: tr|A0A0A0K3G8|A0A0A0K3G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 2  MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE 61
          MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELE 60

Query: 62 LIFQRHNDEDMKHLVTTEIFSLENSATGT 91
          LIFQRHNDEDMKHLVTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44023.1	2.3e-21	100.00	hypothetical protein Csa_7G109800 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3G8\|A0A0A0K3G8_CUCSA	1.5e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011330.1	CsaV3_7G011330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G011330	CSPI07G08230	Wild cucumber (PI 183967)	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011330	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011330	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011330	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011330	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011330	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011330	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011330	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011330	Bottle gourd (USVL1VR-Ls)	cuclsiB546
CsaV3_7G011330	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011330	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011330	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011330	Watermelon (97103) v1	cucwmB585
CsaV3_7G011330	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011330	Wax gourd	cucwgoB722
CsaV3_7G011330	Silver-seed gourd	carcucB0921
CsaV3_7G011330	Silver-seed gourd	carcucB0945