CSPI07G08230 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G08230
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 5997547 .. 5997816 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

mRNA sequence

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Coding sequence (CDS)

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Homology

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BLAST of CSPI07G08230 vs. TrEMBL
Match: A0A0A0K3G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G109800 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-37
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 1  MIEGYNGGSGGHQRRSRTKDTMELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60
          MIEGYNGGSGGHQRRSRTKDT ELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60

Query: 61 LIFQRHNDEDMKQPVTTEIFSLENSATGT 90
          LIFQRHNDEDMK  VTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

[Close]

BLAST of CSPI07G08230 vs. NCBI nr
Match: gi|700188790|gb|KGN44023.1| (hypothetical protein Csa_7G109800 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-37
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 1  MIEGYNGGSGGHQRRSRTKDTMELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60
          MIEGYNGGSGGHQRRSRTKDT ELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60

Query: 61 LIFQRHNDEDMKQPVTTEIFSLENSATGT 90
          LIFQRHNDEDMK  VTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

The following BLAST results are available for this feature:

BLAST of CSPI07G08230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G08230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G8_CUCSA	3.0e-37	96.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G109800 PE=4 SV=1	[more]

BLAST of CSPI07G08230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G08230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188790\|gb\|KGN44023.1\|	4.4e-37	96.63	hypothetical protein Csa_7G109800 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08230.1	CSPI07G08230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G08230	Csa7G109800	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G08230	CsaV3_7G011330	Cucumber (Chinese Long) v3	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G08230	Wax gourd	cpiwgoB709
CSPI07G08230	Wild cucumber (PI 183967)	cpicpiB094
CSPI07G08230	Cucurbita maxima (Rimu)	cmacpiB041
CSPI07G08230	Cucurbita maxima (Rimu)	cmacpiB504
CSPI07G08230	Cucurbita moschata (Rifu)	cmocpiB031
CSPI07G08230	Cucurbita moschata (Rifu)	cmocpiB495
CSPI07G08230	Melon (DHL92) v3.5.1	cpimeB530
CSPI07G08230	Watermelon (Charleston Gray)	cpiwcgB548
CSPI07G08230	Watermelon (97103) v1	cpiwmB579
CSPI07G08230	Cucurbita pepo (Zucchini)	cpecpiB590
CSPI07G08230	Cucurbita pepo (Zucchini)	cpecpiB798
CSPI07G08230	Bottle gourd (USVL1VR-Ls)	cpilsiB526
CSPI07G08230	Melon (DHL92) v3.6.1	cpimedB533
CSPI07G08230	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G08230	Silver-seed gourd	carcpiB0918
CSPI07G08230	Silver-seed gourd	carcpiB0944
CSPI07G08230	Watermelon (97103) v2	cpiwmbB591