CsaV3_7G007330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G007330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 4578260 .. 4578829 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGGTATGTCACTAACAACCACGAAACCAAATTCGTTTTCGACGCAACTCGCCAACATATATCGGACGAATGGACCTGAATTATTTCAAACTTCAACTCAGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGTGAACACATAAGTTCACAGCATCACCTAGCAACTTTAGAACCAATTCCTATCTCCATCTTCATGCATGGTGACGGAACTTTGGAGGGATTAATTTTTCAGGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAGTGAATAGTACTTGTAGGGTGTTTGAAAAGATTTATATCCTCTTGAAATTGTGATGGAGTTGTTGGTTTTTGAGACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

mRNA sequence

ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

Coding sequence (CDS)

ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

Protein sequence

MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWVRKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM
Homology
[Close]
BLAST of CsaV3_7G007330 vs. NCBI nr
Match: KGN43802.1 (hypothetical protein Csa_7G068060 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60
          MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV
Sbjct: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60

Query: 61 RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM 99
          RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM
Sbjct: 61 RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM 98

[Close]
BLAST of CsaV3_7G007330 vs. TrEMBL
Match: tr|A0A0A0K679|A0A0A0K679_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60
          MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV
Sbjct: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60

Query: 61 RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM 99
          RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM
Sbjct: 61 RKVXXXXXXXXXXXXEIDHQPQVMTAPTSDSDDVLESM 98

The following BLAST results are available for this feature:
BLAST of CsaV3_7G007330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43802.12.0e-39100.00hypothetical protein Csa_7G068060 [Cucumis sativus][more]
BLAST of CsaV3_7G007330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G007330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G007330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K679|A0A0A0K679_CUCSA1.3e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G007330.1CsaV3_7G007330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..98

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G007330CSPI07G06360Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G007330Silver-seed gourdcarcucB0322
CsaV3_7G007330Silver-seed gourdcarcucB0413
CsaV3_7G007330Silver-seed gourdcarcucB0490
CsaV3_7G007330Silver-seed gourdcarcucB0769
CsaV3_7G007330Silver-seed gourdcarcucB0770
CsaV3_7G007330Cucumber (Gy14) v2cgybcucB348
CsaV3_7G007330Cucumber (Gy14) v1cgycucB342
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0181
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0232
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0645
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G007330Cucurbita maxima (Rimu)cmacucB0959
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0158
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0629
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G007330Cucurbita moschata (Rifu)cmocucB0949
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0141
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0329
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0867
CsaV3_7G007330Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G007330Wild cucumber (PI 183967)cpicucB252
CsaV3_7G007330Bottle gourd (USVL1VR-Ls)cuclsiB552
CsaV3_7G007330Bottle gourd (USVL1VR-Ls)cuclsiB554
CsaV3_7G007330Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G007330Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G007330Melon (DHL92) v3.5.1cucmeB569
CsaV3_7G007330Melon (DHL92) v3.5.1cucmeB585
CsaV3_7G007330Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G007330Melon (DHL92) v3.6.1cucmedB572
CsaV3_7G007330Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G007330Watermelon (Charleston Gray)cucwcgB556
CsaV3_7G007330Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G007330Watermelon (Charleston Gray)cucwcgB601
CsaV3_7G007330Watermelon (97103) v1cucwmB580
CsaV3_7G007330Watermelon (97103) v1cucwmB602
CsaV3_7G007330Watermelon (97103) v1cucwmB607
CsaV3_7G007330Watermelon (97103) v2cucwmbB537
CsaV3_7G007330Watermelon (97103) v2cucwmbB550
CsaV3_7G007330Watermelon (97103) v2cucwmbB581
CsaV3_7G007330Wax gourdcucwgoB674
CsaV3_7G007330Wax gourdcucwgoB686
CsaV3_7G007330Wax gourdcucwgoB699