CsaV3_7G007090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G007090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At4g11690
Locationchr7 : 4439134 .. 4441090 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCCGCCGATGATTTTGGTTTTGTGTTAGAGTTTGGTAAGTTTCATAGAAGTTTGTTATAGCATTTTTGAGAAATTGCTACAGAAATCCCAAGTCTTTTTATTCCCTTCTTTTCTTTGTTAGATTTTGTCTTGTTCATATATAATTCTTAGTTCCTGATTTATTCTCGTATTTATGGTGCCCAAATCTATTGGCTTCGTGTACCCATTTCTTTCTAATCGGATCACCTCATATTTCTTCACTATTTCTTCAACACAACGAAATCTGAATTCTGAATCTGTTTGTGGTCGTCCCCGTGATGCAGTTATCAATGCTTCTTTTCAGTCTCAACTATTAGAACAATCCCTTGATAGTTTTAAACTAATGGTCCTTAAAGGGCATTCTCCGAGTTCTTTCTCTTTCAATAATGCATTGGATTTACTTGCTAAATCAGGGAATCTGGATAGAACTTGGGGGTTTTTCACTGAATATTTGGGGAGGACTCAGTTTGATGTGTATAGTTTTGGGATTACGATTAAAGCCTTTTGTGAAAATGGCAATGTAAGTAAAGGCTTTGAGCTTTTGGCTCAAATGGAGACGATGGGTGTGTCTCCTAATGTTTTTATATACACTATCTTGATTGAAGCTTGTTGCAGAAATGGTGACATTGATCAAGCTAAAGTAATGTTTTCTAGGATGGATGACCTTGGTTTGGCTGCTAACCAATATATTTATACTATCATGATCAATGGATTTTTCAAGAAAGGTTACAAGAAGGATGGTTTTGAGCTTTACCAGAAGATGAAGCTTGTGGGGGTGCTTCCCAATTTATATACTTACAACAGTCTCATTACTGAATATTGTAGGGATGGAAAATTGAGCCTTGCCTTTAAGGTATTTGATGAAATATCTAAAAGAGGGGTGGCATGTAATGCAGTCACATACAATATTCTAATAGGTGGGTTATGCCGGAAGGGACAAGTGTCGAAAGCAGAAGGATTGTTAGAACGAATGAAACGAGCTCATATAAATCCAACTACTAGAACATTTAACATGTTGATGGATGGGTTGTGTAACACTGGACAGTTGGACAAGGCCTTAAGTTATCTCGAAAAACTGAAGTTGATTGGTTTATGTCCAACTCTAGTGACCTACAATATTTTAATTTCAGGTTTCTCTAAAGTAGGAAATTCTTCTGTAGTTTCAGAGTTAGTGAGGGAGATGGAGGACAGAGGAATTTCTCCCTCGAAAGTGACGTATACAATTTTGATGAATACGTTTGTTCGATCTGATGATATAGAGAAAGCCTATGAGATGTTTCATCTCATGAAGAGAATTGGTTTGGTCCCAGATCAGCATACCTATGGTGTCCTAATCCATGGTTTGTGTATAAAAGGTAATATGGTTGAGGCATCAAAACTATACAAATCAATGGTAGAGATGCATCTACAGCCTAATGATGTTATCTATAATACAATGATAAATGGGTACTGCAAAGAGTGCAACTCCTACAAGGCCTTAAAGTTTCTTGAAGAGATGGTTAAAAATGGAGTAACTCCAAATGTGGCTAGTTATATTTCCACCATTCAAATCCTTTGCAAGGACGGGAAGTCAATTGAGGCGAAACGTTTACTTAAAGAGATGACTGAAGCCGGGTTGAAGCCTCCAGAATCTCTATGTAGTAAAGTTGGTCAAGCCAAATCTTGTGCATAAAAATAAAAATAACAACAAAGGCTTTTATAAGACCAAAGACATAACTACAACAAATGATGTAGAAGTTTACAAAAAATTGTGGCGTGTTGAATGAGAAGTTAATAGGTTCGTTAGATAACCATTTCACTCTTTTAGAATTAACTCTATTTTTTTTTGTCTATGTGAAGCATTTTCCTTATGTGTTTCATGGGACTTTCGAAACTGTTGAAAAAACACTAATGCTATAATATTGTTTTCAATGGGTAGATACAATATTGATACCCTA

mRNA sequence

ATGGTGCCCAAATCTATTGGCTTCGTGTACCCATTTCTTTCTAATCGGATCACCTCATATTTCTTCACTATTTCTTCAACACAACGAAATCTGAATTCTGAATCTGTTTGTGGTCGTCCCCGTGATGCAGTTATCAATGCTTCTTTTCAGTCTCAACTATTAGAACAATCCCTTGATAGTTTTAAACTAATGGTCCTTAAAGGGCATTCTCCGAGTTCTTTCTCTTTCAATAATGCATTGGATTTACTTGCTAAATCAGGGAATCTGGATAGAACTTGGGGGTTTTTCACTGAATATTTGGGGAGGACTCAGTTTGATGTGTATAGTTTTGGGATTACGATTAAAGCCTTTTGTGAAAATGGCAATGTAAGTAAAGGCTTTGAGCTTTTGGCTCAAATGGAGACGATGGGTGTGTCTCCTAATGTTTTTATATACACTATCTTGATTGAAGCTTGTTGCAGAAATGGTGACATTGATCAAGCTAAAGTAATGTTTTCTAGGATGGATGACCTTGGTTTGGCTGCTAACCAATATATTTATACTATCATGATCAATGGATTTTTCAAGAAAGGTTACAAGAAGGATGGTTTTGAGCTTTACCAGAAGATGAAGCTTGTGGGGGTGCTTCCCAATTTATATACTTACAACAGTCTCATTACTGAATATTGTAGGGATGGAAAATTGAGCCTTGCCTTTAAGGTATTTGATGAAATATCTAAAAGAGGGGTGGCATGTAATGCAGTCACATACAATATTCTAATAGGTGGGTTATGCCGGAAGGGACAAGTGTCGAAAGCAGAAGGATTGTTAGAACGAATGAAACGAGCTCATATAAATCCAACTACTAGAACATTTAACATGTTGATGGATGGGTTGTGTAACACTGGACAGTTGGACAAGGCCTTAAGTTATCTCGAAAAACTGAAGTTGATTGGTTTATGTCCAACTCTAGTGACCTACAATATTTTAATTTCAGGTTTCTCTAAAGTAGGAAATTCTTCTGTAGTTTCAGAGTTAGTGAGGGAGATGGAGGACAGAGGAATTTCTCCCTCGAAAGTGACGTATACAATTTTGATGAATACGTTTGTTCGATCTGATGATATAGAGAAAGCCTATGAGATGTTTCATCTCATGAAGAGAATTGGTTTGGTCCCAGATCAGCATACCTATGGTGTCCTAATCCATGGTTTGTGTATAAAAGGTAATATGGTTGAGGCATCAAAACTATACAAATCAATGGTAGAGATGCATCTACAGCCTAATGATGTTATCTATAATACAATGATAAATGGGTACTGCAAAGAGTGCAACTCCTACAAGGCCTTAAAGTTTCTTGAAGAGATGGTTAAAAATGGAGTAACTCCAAATGTGGCTAGTTATATTTCCACCATTCAAATCCTTTGCAAGGACGGGAAGTCAATTGAGGCGAAACGTTTACTTAAAGAGATGACTGAAGCCGGGTTGAAGCCTCCAGAATCTCTATGTAGTAAAGTTGGTCAAGCCAAATCTTGTGCATAA

Coding sequence (CDS)

ATGGTGCCCAAATCTATTGGCTTCGTGTACCCATTTCTTTCTAATCGGATCACCTCATATTTCTTCACTATTTCTTCAACACAACGAAATCTGAATTCTGAATCTGTTTGTGGTCGTCCCCGTGATGCAGTTATCAATGCTTCTTTTCAGTCTCAACTATTAGAACAATCCCTTGATAGTTTTAAACTAATGGTCCTTAAAGGGCATTCTCCGAGTTCTTTCTCTTTCAATAATGCATTGGATTTACTTGCTAAATCAGGGAATCTGGATAGAACTTGGGGGTTTTTCACTGAATATTTGGGGAGGACTCAGTTTGATGTGTATAGTTTTGGGATTACGATTAAAGCCTTTTGTGAAAATGGCAATGTAAGTAAAGGCTTTGAGCTTTTGGCTCAAATGGAGACGATGGGTGTGTCTCCTAATGTTTTTATATACACTATCTTGATTGAAGCTTGTTGCAGAAATGGTGACATTGATCAAGCTAAAGTAATGTTTTCTAGGATGGATGACCTTGGTTTGGCTGCTAACCAATATATTTATACTATCATGATCAATGGATTTTTCAAGAAAGGTTACAAGAAGGATGGTTTTGAGCTTTACCAGAAGATGAAGCTTGTGGGGGTGCTTCCCAATTTATATACTTACAACAGTCTCATTACTGAATATTGTAGGGATGGAAAATTGAGCCTTGCCTTTAAGGTATTTGATGAAATATCTAAAAGAGGGGTGGCATGTAATGCAGTCACATACAATATTCTAATAGGTGGGTTATGCCGGAAGGGACAAGTGTCGAAAGCAGAAGGATTGTTAGAACGAATGAAACGAGCTCATATAAATCCAACTACTAGAACATTTAACATGTTGATGGATGGGTTGTGTAACACTGGACAGTTGGACAAGGCCTTAAGTTATCTCGAAAAACTGAAGTTGATTGGTTTATGTCCAACTCTAGTGACCTACAATATTTTAATTTCAGGTTTCTCTAAAGTAGGAAATTCTTCTGTAGTTTCAGAGTTAGTGAGGGAGATGGAGGACAGAGGAATTTCTCCCTCGAAAGTGACGTATACAATTTTGATGAATACGTTTGTTCGATCTGATGATATAGAGAAAGCCTATGAGATGTTTCATCTCATGAAGAGAATTGGTTTGGTCCCAGATCAGCATACCTATGGTGTCCTAATCCATGGTTTGTGTATAAAAGGTAATATGGTTGAGGCATCAAAACTATACAAATCAATGGTAGAGATGCATCTACAGCCTAATGATGTTATCTATAATACAATGATAAATGGGTACTGCAAAGAGTGCAACTCCTACAAGGCCTTAAAGTTTCTTGAAGAGATGGTTAAAAATGGAGTAACTCCAAATGTGGCTAGTTATATTTCCACCATTCAAATCCTTTGCAAGGACGGGAAGTCAATTGAGGCGAAACGTTTACTTAAAGAGATGACTGAAGCCGGGTTGAAGCCTCCAGAATCTCTATGTAGTAAAGTTGGTCAAGCCAAATCTTGTGCATAA

Protein sequence

MVPKSIGFVYPFLSNRITSYFFTISSTQRNLNSESVCGRPRDAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKVGQAKSCA
Homology
[Close]
BLAST of CsaV3_7G007090 vs. NCBI nr
Match: XP_004137069.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTISSTQRNLNSESVCGRPRDAVINASFQSQLLEQSLDS 60
           MVPKSIGFVYPFLSNRITSYFFTISSTQRNLNSESVCGRPRDAVINASFQSQLLEQSLDS
Sbjct: 1   MVPKSIGFVYPFLSNRITSYFFTISSTQRNLNSESVCGRPRDAVINASFQSQLLEQSLDS 60

Query: 61  FKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCEN 120
           FKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCEN
Sbjct: 61  FKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCEN 120

Query: 121 GNVSKGFELLAQMETMGVSP 141
           GNVSKGFELLAQMETMGVSP
Sbjct: 121 GNVSKGFELLAQMETMGVSP 140

[Close]
BLAST of CsaV3_7G007090 vs. NCBI nr
Match: XP_008455127.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 6.4e-65
Identity = 132/145 (91.03%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTIS-----STQRNLNSESVCGRPRDAVINASFQSQLLE 60
           MVPKSIGFVYPFLSNRITS FFTIS     STQRNLNSESVCGRP DAVINAS QS  LE
Sbjct: 1   MVPKSIGFVYPFLSNRITSSFFTISSLLTYSTQRNLNSESVCGRPHDAVINASLQSPQLE 60

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           QSLDSFKLMVLKGHSPSS+SFNN LDLLAKSGNLDRTW FFTEYLGRTQFDVYSFGITIK
Sbjct: 61  QSLDSFKLMVLKGHSPSSYSFNNVLDLLAKSGNLDRTWWFFTEYLGRTQFDVYSFGITIK 120

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
           AFCENGNVSKGFELLAQMETMGVSP
Sbjct: 121 AFCENGNVSKGFELLAQMETMGVSP 145

[Close]
BLAST of CsaV3_7G007090 vs. NCBI nr
Match: XP_022971940.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-47
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTIS-----STQRNLNSESVCGRPRDAVINASFQSQLLE 60
           MVPKSIGF++ FLSNRITS FFTIS     STQ NLNS        +A+INAS QSQLLE
Sbjct: 1   MVPKSIGFLHSFLSNRITSSFFTISSILTYSTQPNLNS-------HEAIINASLQSQLLE 60

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           QSL SFKLM+L+GH PSS SFNN L LLAKSG+L +TW FFTE+LGRT+FD YSFGITIK
Sbjct: 61  QSLHSFKLMILQGHCPSSISFNNVLGLLAKSGDLHKTWCFFTEFLGRTRFDEYSFGITIK 120

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
           AFC+NGNVSKGFELLAQME +G+SP
Sbjct: 121 AFCKNGNVSKGFELLAQMERIGLSP 138

[Close]
BLAST of CsaV3_7G007090 vs. NCBI nr
Match: XP_022953086.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-44
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTIS-----STQRNLNSESVCGRPRDAVINASFQSQLLE 60
           MVPKSI FV+ FLSNRITS F TIS     STQ NLNS        +A+ +AS QSQ LE
Sbjct: 1   MVPKSIAFVHSFLSNRITSSFLTISSILTYSTQPNLNS-------HEAITSASLQSQQLE 60

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           QSL+SFKLM+L+GH PS+ SFNN L LLAKSG+L +TW FFTE+LGRT FD YSFGITIK
Sbjct: 61  QSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFLGRTHFDEYSFGITIK 120

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
           AFC+NGNVSKGFELLAQME +G+SP
Sbjct: 121 AFCKNGNVSKGFELLAQMERIGLSP 138

[Close]
BLAST of CsaV3_7G007090 vs. NCBI nr
Match: XP_023511558.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-44
Identity = 102/145 (70.34%), Postives = 114/145 (78.62%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTIS-----STQRNLNSESVCGRPRDAVINASFQSQLLE 60
           MVPKSIG V+ FLSNR TS FFTIS     STQ NLNS        +A+ +AS QSQ LE
Sbjct: 1   MVPKSIGVVHSFLSNRTTSSFFTISSILTYSTQPNLNS-------HEAITSASLQSQQLE 60

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           QSL+SFKLM+L+G  PSS SFNN L LLAKSG+L +TW FFTE+LGRT FD YSFGITIK
Sbjct: 61  QSLNSFKLMILQGQCPSSISFNNVLGLLAKSGDLHKTWWFFTEFLGRTHFDEYSFGITIK 120

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
           AFCENGNVSKGFELLAQME +G+SP
Sbjct: 121 AFCENGNVSKGFELLAQMERIGLSP 138

[Close]
BLAST of CsaV3_7G007090 vs. TAIR10
Match: AT4G11690.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-16
Identity = 50/131 (38.17%), Postives = 65/131 (49.62%), Query Frame = 0 

Query: 13  LSNRITSYFFTISSTQRNLNSESVCG---RPRDAVINASFQSQLLEQSLDSFKLMVLKGH 72
           +S +I S FFT SS    L          R  + +IN+  QSQ L  S+  F  MV  G 
Sbjct: 66  ISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGF 125

Query: 73  SPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFEL 132
            P S  FN  L  +  S + ++ W FF E   +   DVYSFGI IK  CE G + K F+L
Sbjct: 126 VPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 133 LAQMETMGVSP 141
           L ++   G SP
Sbjct: 186 LIELTEFGFSP 196

[Close]
BLAST of CsaV3_7G007090 vs. TAIR10
Match: AT5G18950.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.2e-06
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 53  LLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGI 112
           L+E++++ + ++   G S S  + N+ L    K+  LDR W    E +  ++FD      
Sbjct: 160 LVEEAIEVYNVLKDMGISSSVVTCNSVLLGCLKARKLDRFWELHKEMV-ESEFDSERIRC 219

Query: 113 TIKAFCENGNVSKGFELLAQMETMGVSP 141
            I+A C+ G+VS+G+ELL Q    G+ P
Sbjct: 220 LIRALCDGGDVSEGYELLKQGLKQGLDP 246

[Close]
BLAST of CsaV3_7G007090 vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 5.3e-05
Identity = 28/98 (28.57%), Postives = 48/98 (48.98%), Query Frame = 0 

Query: 44  VINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRT 103
           +I +  Q+ +   ++ +F+ M   G   S+ SFN  L+    S N D+    F     R 
Sbjct: 108 LIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRY 167

Query: 104 QF---DVYSFGITIKAFCENGNVSKGFELLAQMETMGV 139
                D  S+GI IK++C++G   K  E++ QM+  G+
Sbjct: 168 NKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGM 205

[Close]
BLAST of CsaV3_7G007090 vs. Swiss-Prot
Match: sp|Q9T0D6|PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX=3702 GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-15
Identity = 50/131 (38.17%), Postives = 65/131 (49.62%), Query Frame = 0 

Query: 13  LSNRITSYFFTISSTQRNLNSESVCG---RPRDAVINASFQSQLLEQSLDSFKLMVLKGH 72
           +S +I S FFT SS    L          R  + +IN+  QSQ L  S+  F  MV  G 
Sbjct: 66  ISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGF 125

Query: 73  SPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFEL 132
            P S  FN  L  +  S + ++ W FF E   +   DVYSFGI IK  CE G + K F+L
Sbjct: 126 VPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 133 LAQMETMGVSP 141
           L ++   G SP
Sbjct: 186 LIELTEFGFSP 196

[Close]
BLAST of CsaV3_7G007090 vs. Swiss-Prot
Match: sp|Q8GYM2|PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana OX=3702 GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-04
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 53  LLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGI 112
           L+E++++ + ++   G S S  + N+ L    K+  LDR W    E +  ++FD      
Sbjct: 160 LVEEAIEVYNVLKDMGISSSVVTCNSVLLGCLKARKLDRFWELHKEMV-ESEFDSERIRC 219

Query: 113 TIKAFCENGNVSKGFELLAQMETMGVSP 141
            I+A C+ G+VS+G+ELL Q    G+ P
Sbjct: 220 LIRALCDGGDVSEGYELLKQGLKQGLDP 246

[Close]
BLAST of CsaV3_7G007090 vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.5e-04
Identity = 28/98 (28.57%), Postives = 48/98 (48.98%), Query Frame = 0 

Query: 44  VINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRT 103
           +I +  Q+ +   ++ +F+ M   G   S+ SFN  L+    S N D+    F     R 
Sbjct: 108 LIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRY 167

Query: 104 QF---DVYSFGITIKAFCENGNVSKGFELLAQMETMGV 139
                D  S+GI IK++C++G   K  E++ QM+  G+
Sbjct: 168 NKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGM 205

[Close]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match: tr|A0A1S3C0B2|A0A1S3C0B2_CUCME (pentatricopeptide repeat-containing protein At4g11690 OS=Cucumis melo OX=3656 GN=LOC103495373 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 4.2e-65
Identity = 132/145 (91.03%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTIS-----STQRNLNSESVCGRPRDAVINASFQSQLLE 60
           MVPKSIGFVYPFLSNRITS FFTIS     STQRNLNSESVCGRP DAVINAS QS  LE
Sbjct: 1   MVPKSIGFVYPFLSNRITSSFFTISSLLTYSTQRNLNSESVCGRPHDAVINASLQSPQLE 60

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           QSLDSFKLMVLKGHSPSS+SFNN LDLLAKSGNLDRTW FFTEYLGRTQFDVYSFGITIK
Sbjct: 61  QSLDSFKLMVLKGHSPSSYSFNNVLDLLAKSGNLDRTWWFFTEYLGRTQFDVYSFGITIK 120

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
           AFCENGNVSKGFELLAQMETMGVSP
Sbjct: 121 AFCENGNVSKGFELLAQMETMGVSP 145

[Close]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match: tr|A0A251NLL1|A0A251NLL1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076800 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 63/133 (47.37%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 13  LSNRITSYFFTISS-----TQRNLNSESVCGRPRDAVINASFQSQLLEQSLDSFKLMVLK 72
           L+ R++S FFT SS     TQ +L+S  +C    + +INA  QSQL EQ+L   K MV +
Sbjct: 65  LTGRLSSPFFTPSSLLHRLTQPHLSSNPLCSHLFETIINAHVQSQLPEQALYFLKQMVDQ 124

Query: 73  GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGF 132
           G  P S +FNN L  L KS +  + W  F E+ GR + DVYSFGI IK+ CE G++ +GF
Sbjct: 125 GLVPRSNTFNNLLGSLVKSKDFGKAWWVFNEFKGRVELDVYSFGIMIKSCCEAGDLDRGF 184

Query: 133 ELLAQMETMGVSP 141
           ELL Q+E M +SP
Sbjct: 185 ELLVQLEEMVLSP 197

[Close]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match: tr|A0A2N9FWE1|A0A2N9FWE1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22819 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.3e-21
Identity = 65/137 (47.45%), Postives = 81/137 (59.12%), Query Frame = 0 

Query: 9   VYPFLSNRITSYFFTISS-----TQRNLNSESVCGRPRDAVINASFQSQLLEQSLDSFKL 68
           +   LS RI+S  FT SS     TQ NLN  S      +A+INA  QSQL EQ+L  F  
Sbjct: 48  ILQILSGRISSPTFTSSSLLHYLTQTNLNLNSTHVHLYEAIINAHVQSQLPEQALFYFTQ 107

Query: 69  MVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNV 128
           M+ KG      +FNN L  L KS   ++ W FF E  G+ + DVYSFGI IK  CE G++
Sbjct: 108 MIGKGLVSGPNTFNNLLGFLIKSNMFEKAWCFFNETKGKVELDVYSFGIMIKGCCEAGDL 167

Query: 129 SKGFELLAQMETMGVSP 141
           ++GFELL Q+E MG SP
Sbjct: 168 NRGFELLVQLEEMGWSP 184

[Close]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match: tr|A0A2P4IT66|A0A2P4IT66_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_48612 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-19
Identity = 63/145 (43.45%), Postives = 80/145 (55.17%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTISS-----TQRNLNSESVCGRPRDAVINASFQSQLLE 60
           M+P     +   LS RI+S  FT SS     TQ NL  +S      +A+INA  Q QL E
Sbjct: 40  MLPHVQSLIQQILSGRISSPTFTSSSLLHYLTQTNLILDSTNVHLYEAIINAHAQCQLTE 99

Query: 61  QSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIK 120
           Q+L  F  M+ KG  P   +FNN L  L  S   ++ W  F E  G+ + DVYSFGI IK
Sbjct: 100 QALFYFTQMIDKGLVPGPNTFNNLLGFLINSNCFEKAWCLFNETKGKVEMDVYSFGIMIK 159

Query: 121 AFCENGNVSKGFELLAQMETMGVSP 141
             CE G++ +GFELL  +E MG SP
Sbjct: 160 GCCEAGDLDRGFELLVLLEEMGWSP 184

[Close]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match: tr|A0A200Q5W8|A0A200Q5W8_9MAGN (Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_4379g2 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 0 

Query: 1   MVPKSIGFVYPFLSNRITSYFFTISSTQRNL-------NSESVCGRPRDAVINASFQSQL 60
           M+ ++   +   +S R++S  FT  S  ++L       NS ++     +A+INA  QSQ+
Sbjct: 40  MLAEAQSILLQLISGRLSSLSFTPPSLLQHLTDSNSRYNSSNLLPL-YEAIINAHVQSQM 99

Query: 61  LEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGIT 120
            E++L  F  M+ +G  P S  FNN L LL K    ++ W FF E  G+T+FD YSFGI 
Sbjct: 100 PEEALFYFHQMINRGLVPRSNIFNNLLTLLLKFNLFEKAWSFFNETKGKTEFDSYSFGIM 159

Query: 121 IKAFCENGNVSKGFELLAQMETMGVSP 141
           +K  CE G++ KGFELL+Q+E MG+SP
Sbjct: 160 VKGCCEFGDLKKGFELLSQLEEMGLSP 185

The following BLAST results are available for this feature:
BLAST of CsaV3_7G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137069.13.2e-72100.00PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Cucumis sativu... [more]
XP_008455127.16.4e-6591.03PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Cucumis melo][more]
XP_022971940.11.2e-4773.10pentatricopeptide repeat-containing protein At4g11690 [Cucurbita maxima][more]
XP_022953086.11.2e-4469.66pentatricopeptide repeat-containing protein At4g11690 [Cucurbita moschata][more]
XP_023511558.11.6e-4470.34pentatricopeptide repeat-containing protein At4g11690 [Cucurbita pepo subsp. pep... [more]
BLAST of CsaV3_7G007090 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11690.11.0e-1638.17Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G18950.18.2e-0631.82Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G36680.15.3e-0528.57Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_7G007090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9T0D6|PP306_ARATH1.9e-1538.17Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX... [more]
sp|Q8GYM2|PP393_ARATH1.5e-0431.82Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana OX... [more]
sp|Q9M065|PP352_ARATH9.5e-0428.57Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_7G007090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0B2|A0A1S3C0B2_CUCME4.2e-6591.03pentatricopeptide repeat-containing protein At4g11690 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A251NLL1|A0A251NLL1_PRUPE1.7e-2147.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076800 PE=4 SV=1[more]
tr|A0A2N9FWE1|A0A2N9FWE1_FAGSY8.3e-2147.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22819 PE=4 SV=1[more]
tr|A0A2P4IT66|A0A2P4IT66_QUESU4.6e-1943.45Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_4... [more]
tr|A0A200Q5W8|A0A200Q5W8_9MAGN6.0e-1940.82Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_4379g2 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0080156 mitochondrial mRNA modification
biological_process GO:0009737 response to abscisic acid
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G007090.1CsaV3_7G007090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 310..413
e-value: 5.3E-28
score: 100.3
coord: 169..309
e-value: 1.4E-42
score: 148.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 414..489
e-value: 4.0E-19
score: 70.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 25..168
e-value: 3.2E-30
score: 107.7
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 382..414
e-value: 5.5E-8
score: 32.3
coord: 278..306
e-value: 2.0E-6
score: 27.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 109..138
e-value: 0.0043
score: 17.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 210..259
e-value: 2.4E-18
score: 65.9
coord: 420..468
e-value: 2.9E-14
score: 52.9
coord: 315..363
e-value: 1.3E-13
score: 50.7
coord: 140..189
e-value: 2.6E-12
score: 46.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 144..176
e-value: 2.5E-7
score: 28.5
coord: 423..457
e-value: 1.1E-10
score: 38.9
coord: 388..421
e-value: 5.7E-7
score: 27.3
coord: 248..281
e-value: 2.9E-9
score: 34.5
coord: 284..310
e-value: 9.4E-6
score: 23.5
coord: 110..142
e-value: 9.8E-6
score: 23.4
coord: 213..246
e-value: 1.3E-7
score: 29.4
coord: 318..351
e-value: 6.8E-8
score: 30.2
coord: 353..386
e-value: 4.2E-8
score: 30.9
coord: 178..211
e-value: 1.1E-5
score: 23.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 72..102
score: 6.445
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 351..385
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..71
score: 5.393
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 456..490
score: 11.038
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 106..140
score: 11.17
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..455
score: 12.726
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..210
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 11.301
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 11.005
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..350
score: 11.729
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 211..245
score: 12.003
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 141..175
score: 11.63
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 13.044
NoneNo IPR availablePANTHERPTHR24015:SF362SUBFAMILY NOT NAMEDcoord: 42..496
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 42..496
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 361..489
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 150..323

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G007090CSPI07G06110Wild cucumber (PI 183967)cpicucB415
CsaV3_7G007090Cucsa.218440Cucumber (Gy14) v1cgycucB342
CsaV3_7G007090CmoCh19G005030Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G007090Carg22801Silver-seed gourdcarcucB0323
CsaV3_7G007090Cla012934Watermelon (97103) v1cucwmB580
CsaV3_7G007090MELO3C018585Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G007090ClCG09G016230Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G007090Lsi03G006920Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G007090Cla97C09G177990Watermelon (97103) v2cucwmbB581
CsaV3_7G007090Bhi05G000783Wax gourdcucwgoB686
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G007090Silver-seed gourdcarcucB0413
CsaV3_7G007090Silver-seed gourdcarcucB0770
CsaV3_7G007090Cucumber (Gy14) v2cgybcucB348
CsaV3_7G007090Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G007090Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G007090Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G007090Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G007090Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G007090Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G007090Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G007090Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G007090Wild cucumber (PI 183967)cpicucB252
CsaV3_7G007090Bottle gourd (USVL1VR-Ls)cuclsiB554
CsaV3_7G007090Melon (DHL92) v3.5.1cucmeB585
CsaV3_7G007090Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G007090Melon (DHL92) v3.6.1cucmedB572
CsaV3_7G007090Watermelon (Charleston Gray)cucwcgB556
CsaV3_7G007090Watermelon (97103) v1cucwmB602
CsaV3_7G007090Watermelon (97103) v2cucwmbB537
CsaV3_7G007090Wax gourdcucwgoB674