CsaV3_7G006770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 4212129 .. 4212979 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGTATTTGATATATATAAATATATAGATGGAAAACTTTTATCTTACACCACAATAATTACCAAATTTACATAAATTACCAAAAAAATTATCAATATTAATTTAAATTTACCCAAACATTTCTCCTATTTATATGAATATTATTGTCTTAATTCTCCATCATAAACAAAACCAATCCCCTTCTCAATTACAATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGATTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGATGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGATGGTTTATTATTATCACTTTAGAGTTTCTTTTGTTTAAATATGTTATCAATGTTTGAATTCAAATTGTTCTTCATTTTACATTATTTTGTTCATTTTATCCATCAATTACTTTCTCTATTTTAATTTCATTCACTTCATATTTATTTTTGGTTGCTGAAAATCATCTATATAAAAAATTAATCCCAAATCAAATTATTCAATTTAGTTATGTATTTTCAATCACATTTTCAAATCTAACCTCTCTTAATTATTT

mRNA sequence

ATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGATTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGATGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Coding sequence (CDS)

ATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGATTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGATGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Protein sequence

MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETEPSTPPPSPTSVPPPAHHDEPPTAQPDSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAALL
Homology
[Close]
BLAST of CsaV3_7G006770 vs. NCBI nr
Match: XP_011659717.1 (PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_7G064060 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX 60
           MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX
Sbjct: 1   MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

[Close]
BLAST of CsaV3_7G006770 vs. TrEMBL
Match: tr|A0A0A0K238|A0A0A0K238_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX 60
           MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX
Sbjct: 1   MPHSLLLNALLAAALLFSXXXXXXXXXXXXXXXXXXXPPWRWAPITKPPXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659717.11.6e-15100.00PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus] >KGN43745.1 h... [more]
BLAST of CsaV3_7G006770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K238|A0A0A0K238_CUCSA1.1e-15100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006770.1CsaV3_7G006770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 21..33
score: 46.15
coord: 44..65
score: 52.73
coord: 77..93
score: 36.47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..95

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006770CSPI07G05780Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006770Silver-seed gourdcarcucB0323
CsaV3_7G006770Cucumber (Gy14) v2cgybcucB348
CsaV3_7G006770Cucumber (Gy14) v1cgycucB342
CsaV3_7G006770Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006770Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G006770Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006770Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G006770Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G006770Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006770Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006770Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006770Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G006770Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G006770Watermelon (97103) v1cucwmB580
CsaV3_7G006770Watermelon (97103) v2cucwmbB581
CsaV3_7G006770Wax gourdcucwgoB686