CSPI07G05780 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G05780
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 4322762 .. 4323192 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACCAATCCCCTTCTCAATTACAATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

mRNA sequence

ATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Coding sequence (CDS)

ATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Homology

[Close]

BLAST of CSPI07G05780 vs. TrEMBL
Match: A0A0A0K238_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-59
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1


Query: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
           MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPPSPTSVPPPAHHDEPPTAQPVSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSVV 120
           PSTPPPSPTSVPPPAHHDEPPTAQP SPSPSPTWIAEPPSEALSPSKAKSDGFKNSFS+V
Sbjct: 61  PSTPPPSPTSVPPPAHHDEPPTAQPDSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

[Close]

BLAST of CSPI07G05780 vs. NCBI nr
Match: gi|778730170|ref|XP_011659717.1| (PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.6e-59
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1


Query: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
           MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPPSPTSVPPPAHHDEPPTAQPVSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSVV 120
           PSTPPPSPTSVPPPAHHDEPPTAQP SPSPSPTWIAEPPSEALSPSKAKSDGFKNSFS+V
Sbjct: 61  PSTPPPSPTSVPPPAHHDEPPTAQPDSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

The following BLAST results are available for this feature:

BLAST of CSPI07G05780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G05780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K238_CUCSA	3.2e-59	98.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064060 PE=4 SV=1	[more]

BLAST of CSPI07G05780 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G05780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730170\|ref\|XP_011659717.1\|	4.6e-59	98.51	PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05780.1	CSPI07G05780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 21..33 score: 2.9E-9coord: 77..93 score: 2.9E-9coord: 44..65 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G05780	Csa7G064060	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G05780	CsaV3_7G006770	Cucumber (Chinese Long) v3	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G05780	Wax gourd	cpiwgoB672
CSPI07G05780	Cucumber (Gy14) v1	cgycpiB336
CSPI07G05780	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G05780	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G05780	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G05780	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G05780	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G05780	Watermelon (97103) v1	cpiwmB575
CSPI07G05780	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G05780	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G05780	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G05780	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G05780	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G05780	Silver-seed gourd	carcpiB0323
CSPI07G05780	Watermelon (97103) v2	cpiwmbB584