CsaV3_7G006410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 3967050 .. 3967473 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCTCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACAATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAGTTATTATTATTATTATCGTTGTAGTAACCAAAATATGGGTTTATGAAATTATGAAGAAAAAAACTACTTATTATGAATAAGAATGTG

mRNA sequence

ATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCTCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACAATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAG

Coding sequence (CDS)

ATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCTCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACAATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAG

Protein sequence

MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTKVSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT
Homology
[Close]
BLAST of CsaV3_7G006410 vs. NCBI nr
Match: KGN43709.1 (hypothetical protein Csa_7G062750 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 8.8e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60
           MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK
Sbjct: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60

Query: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 111
           VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT
Sbjct: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 110

[Close]
BLAST of CsaV3_7G006410 vs. TrEMBL
Match: tr|A0A0A0K3Z8|A0A0A0K3Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60
           MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK
Sbjct: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60

Query: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 111
           VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT
Sbjct: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 110

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43709.18.8e-52100.00hypothetical protein Csa_7G062750 [Cucumis sativus][more]
BLAST of CsaV3_7G006410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3Z8|A0A0A0K3Z8_CUCSA5.8e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006410.1CsaV3_7G006410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..110
NoneNo IPR availablePANTHERPTHR33333:SF5GLYCINE-RICH PROTEINcoord: 45..103
NoneNo IPR availablePANTHERPTHR33333FAMILY NOT NAMEDcoord: 45..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006410CSPI07G05460Wild cucumber (PI 183967)cpicucB415
CsaV3_7G006410CsGy7G005080Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006410Wax gourdcucwgoB686
CsaV3_7G006410Silver-seed gourdcarcucB1013
CsaV3_7G006410Cucumber (Gy14) v1cgycucB342
CsaV3_7G006410Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006410Cucurbita maxima (Rimu)cmacucB0642
CsaV3_7G006410Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006410Cucurbita moschata (Rifu)cmocucB0627
CsaV3_7G006410Cucurbita pepo (Zucchini)cpecucB0326
CsaV3_7G006410Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006410Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006410Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006410Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G006410Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G006410Watermelon (97103) v1cucwmB597
CsaV3_7G006410Watermelon (97103) v2cucwmbB581