CSPI07G05460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G05460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 4078016 .. 4078405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCGCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACGATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAGTTATTATTATTATTATCGTTGTAGTAACCAAAATATGGGTTTATGAAATTATGGAGA

mRNA sequence

ATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCGCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACGATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAG

Coding sequence (CDS)

ATGACCCTTCCAATTCCATATCTCTTCCCTATTTTTCTTCTATATAAACAAACACACTTCCGCTCCATCTTCTTCACAGCTCTACAAGAAAATAATTCCCAAAACACTAAAATTCCTCACACCCAAATGAAGAGCGGAAGCGATAGCAAGAACGAGCGCGGCGTCGATAACTCGACGAAAGTTAGTAGCAGTACTGAGGGGTCTAGAAAGACGATGGTTGCTCCTGGAAGTGATGGGAAGGAACATATCCTTCGAGATGAATTTGAGAATGACCCAAAACGTCATTTTGCTAACCTTCGTGCACATGAGAAGAATGAAAAAAGCAAGACTTAG

Homology

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BLAST of CSPI07G05460 vs. TrEMBL
Match: A0A0A0K3Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062750 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.2e-52
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MTLPIPYLFPIFLLYKQTHFRSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60
           MTLPIPYLFPIFLLYKQTHF SIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK
Sbjct: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60

Query: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 111
           VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT
Sbjct: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 110

[Close]

BLAST of CSPI07G05460 vs. NCBI nr
Match: gi|700188476|gb|KGN43709.1| (hypothetical protein Csa_7G062750 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MTLPIPYLFPIFLLYKQTHFRSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60
           MTLPIPYLFPIFLLYKQTHF SIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK
Sbjct: 1   MTLPIPYLFPIFLLYKQTHFLSIFFTALQENNSQNTKIPHTQMKSGSDSKNERGVDNSTK 60

Query: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 111
           VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT
Sbjct: 61  VSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKNEKSKT 110

The following BLAST results are available for this feature:

BLAST of CSPI07G05460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G05460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3Z8_CUCSA	9.2e-52	99.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062750 PE=4 SV=1	[more]

BLAST of CSPI07G05460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G05460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188476\|gb\|KGN43709.1\|	1.3e-51	99.09	hypothetical protein Csa_7G062750 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05460.1	CSPI07G05460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G05460	Csa7G062750	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G05460	CsaV3_7G006410	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G05460	CsGy7G005080	Cucumber (Gy14) v2	cgybcpiB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G05460	Silver-seed gourd	carcpiB1008
CSPI07G05460	Watermelon (97103) v2	cpiwmbB584
CSPI07G05460	Wax gourd	cpiwgoB672
CSPI07G05460	Cucumber (Gy14) v1	cgycpiB336
CSPI07G05460	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G05460	Cucurbita maxima (Rimu)	cmacpiB538
CSPI07G05460	Cucurbita moschata (Rifu)	cmocpiB137
CSPI07G05460	Cucurbita moschata (Rifu)	cmocpiB529
CSPI07G05460	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G05460	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G05460	Watermelon (97103) v1	cpiwmB590
CSPI07G05460	Cucurbita pepo (Zucchini)	cpecpiB262
CSPI07G05460	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G05460	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G05460	Melon (DHL92) v3.6.1	cpimedB523