CsaV3_7G006400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 3964609 .. 3965324 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTTTTGATACATGTCAGATTAGGATCATGCCACCAATTGCCTTCTGAGATAGTCTATTTTAGAGCTGTAGAGCAACAGTTTTCCTCAATAAATGGTGATGGGCAAGCAGATGATGCACCTGGATCCTTGTACAGAAGTGTGAATGGCGAAGACTTAAAGGTACTTGTCCACCGAGTGTCAAAAGAGGGAAAAGAAAACAAAGAAAAAATTGTACTACCCATGTCTTTTAATCAACAACACTAGTGTCATCTTTATATTAGTTCGGTTACTACTTACTTTACCTTATTTGTTGATTTCACATATCCTACTTGCGTTGGCCTGAACGGAATTAGAATTGAGGATGTAGTGTGTTCGCCTCCGAGAACCATATGTTTTTGTGTAGGGGTCACAACATATCCTCACTATAGTACTAAACATAGTGATTATGAGACCGTTTCATGGGACTTGTCAATTAGGATCTTAGAATTATCCTAACTTGCTTGGAATTTTTATATCATCGATTTAATTGTTTTACTTCTAACACCCATCATCTGTTCTGTTCCATCCATAAGTTAATGTTTATGCTCATTTTCTTTATGATGCAGAATCATAGAAAGGTAGAGACACATATGGGTGAGGTCATCTGCTCAAGACACGGCGAGCCATATCCTAATGGCCGGAGCAGTTACATATATCGGAAACTATTTGGCCAATGGTTGCAAAGAAGCTAG

mRNA sequence

ATGAATTTTTTGATACATGTCAGATTAGGATCATGCCACCAATTGCCTTCTGAGATAGTCTATTTTAGAGCTGTAGAGCAACAGTTTTCCTCAATAAATGGTGATGGGCAAGCAGATGATGCACCTGGATCCTTGTACAGAAGTGTGAATGGCGAAGACTTAAAGAATCATAGAAAGGTAGAGACACATATGGGTGAGGTCATCTGCTCAAGACACGGCGAGCCATATCCTAATGGCCGGAGCAGTTACATATATCGGAAACTATTTGGCCAATGGTTGCAAAGAAGCTAG

Coding sequence (CDS)

ATGAATTTTTTGATACATGTCAGATTAGGATCATGCCACCAATTGCCTTCTGAGATAGTCTATTTTAGAGCTGTAGAGCAACAGTTTTCCTCAATAAATGGTGATGGGCAAGCAGATGATGCACCTGGATCCTTGTACAGAAGTGTGAATGGCGAAGACTTAAAGAATCATAGAAAGGTAGAGACACATATGGGTGAGGTCATCTGCTCAAGACACGGCGAGCCATATCCTAATGGCCGGAGCAGTTACATATATCGGAAACTATTTGGCCAATGGTTGCAAAGAAGCTAG

Protein sequence

MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKVETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS
Homology
[Close]
BLAST of CsaV3_7G006400 vs. NCBI nr
Match: KGN43708.1 (hypothetical protein Csa_7G062740 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.5e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV 60
          MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV
Sbjct: 1  MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV 60

Query: 61 ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS 97
          ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS
Sbjct: 61 ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS 96

[Close]
BLAST of CsaV3_7G006400 vs. TrEMBL
Match: tr|A0A0A0K2I8|A0A0A0K2I8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062740 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV 60
          MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV
Sbjct: 1  MNFLIHVRLGSCHQLPSEIVYFRAVEQQFSSINGDGQADDAPGSLYRSVNGEDLKNHRKV 60

Query: 61 ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS 97
          ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS
Sbjct: 61 ETHMGEVICSRHGEPYPNGRSSYIYRKLFGQWLQRS 96

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43708.15.5e-50100.00hypothetical protein Csa_7G062740 [Cucumis sativus][more]
BLAST of CsaV3_7G006400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K2I8|A0A0A0K2I8_CUCSA3.6e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062740 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006400.1CsaV3_7G006400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006400CSPI07G05450Wild cucumber (PI 183967)cpicucB415
CsaV3_7G006400CsGy7G005070Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006400Silver-seed gourdcarcucB1013
CsaV3_7G006400Cucumber (Gy14) v1cgycucB342
CsaV3_7G006400Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006400Cucurbita maxima (Rimu)cmacucB0642
CsaV3_7G006400Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006400Cucurbita moschata (Rifu)cmocucB0627
CsaV3_7G006400Cucurbita pepo (Zucchini)cpecucB0326
CsaV3_7G006400Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006400Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006400Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006400Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G006400Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G006400Watermelon (97103) v1cucwmB597
CsaV3_7G006400Watermelon (97103) v2cucwmbB581
CsaV3_7G006400Wax gourdcucwgoB686