CsaV3_7G005950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G005950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	O-acyltransferase WSD1-like
Location	chr7 : 3572452 .. 3573130 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATGAATACTTTTACGGTGTCCTTTTCGCTCAATTACATAAAGAAAATCAAGACGAAGCTCGACGTGGTGAGTTTTGTAATGAAAAACGCATAACTCTATATTGAAGCTGCGAAAAAAAATATTCATATCTGTGTGTCCATGCCTGCATACACCTACCTCAACTGAATGTCAAGAAAATTTATAAAACGATATCATCATGAATTAATTGAATTCATCCTTCTCAATTATGTATTAAACTCGCATAACCCTTTTAACCACTAGAGTTATAACAATTTATTTTAGTCTTTCAGTTTTCGAAATGCCCAATTTAGCCATTAGTTCAGCTTTTTAAGAAAAAAAAAAGTACCATTGTTTGGTCGTTACCATATGATCTTGTCACGTCAAATTTGCCTCAATGGCTTGAATACATATTCATATTAGGTACATGACTATGCATATATGTTATTTATTTTATACTAACGAGTGTTATTTTTTTTTTCACTGAAAAATGCAGACAGTAAATGATGTGATAACAGGGATAACCTTCATGGGACTAAGGTTGTACATGGAAGAAATGGAGAAAAATTCCGGTGAAGTCGCAGCGACTGCATTGACAATAGTGAACACGAGAGTGATTGGAACCTACCGGCCGGCGACAGAGATGGCAAAACCAGAGAGCAAAGGACTATGGTGA

mRNA sequence

ATGCCGATGAATACTTTTACGGTGTCCTTTTCGCTCAATTACATAAAGAAAATCAAGACGAAGCTCGACGTGACAGTAAATGATGTGATAACAGGGATAACCTTCATGGGACTAAGGTTGTACATGGAAGAAATGGAGAAAAATTCCGGTGAAGTCGCAGCGACTGCATTGACAATAGTGAACACGAGAGTGATTGGAACCTACCGGCCGGCGACAGAGATGGCAAAACCAGAGAGCAAAGGACTATGGTGA

Coding sequence (CDS)

ATGCCGATGAATACTTTTACGGTGTCCTTTTCGCTCAATTACATAAAGAAAATCAAGACGAAGCTCGACGTGACAGTAAATGATGTGATAACAGGGATAACCTTCATGGGACTAAGGTTGTACATGGAAGAAATGGAGAAAAATTCCGGTGAAGTCGCAGCGACTGCATTGACAATAGTGAACACGAGAGTGATTGGAACCTACCGGCCGGCGACAGAGATGGCAAAACCAGAGAGCAAAGGACTATGGTGA

Protein sequence

MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVNTRVIGTYRPATEMAKPESKGLW

Homology

[Close]

BLAST of CsaV3_7G005950 vs. NCBI nr
Match: KGN43654.1 (hypothetical protein Csa_7G051340 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 60
           MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV
Sbjct: 201 MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 260

Query: 61  NTRVIGTYRPATEMAKPESKGLW 84
           NTRVIGTYRPATEMAKPESKGLW
Sbjct: 261 NTRVIGTYRPATEMAKPESKGLW 283

[Close]

BLAST of CsaV3_7G005950 vs. NCBI nr
Match: XP_008455536.1 (PREDICTED: O-acyltransferase WSD1-like [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1   MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 60
           MPMNTFTVSFSLN IKKIKTKL VTVNDVITGI FMGLRLYMEE+EKNSGEVAATALTIV
Sbjct: 223 MPMNTFTVSFSLNDIKKIKTKLQVTVNDVITGIIFMGLRLYMEEIEKNSGEVAATALTIV 282

Query: 61  NTRVIGTYRPATEMAKPESKGLW 84
           NTRVIG YR ATEMAKPESKGLW
Sbjct: 283 NTRVIGNYRSATEMAKPESKGLW 305

[Close]

BLAST of CsaV3_7G005950 vs. NCBI nr
Match: XP_013456649.1 (O-acyltransferase WSD1 isoform X2 [Medicago truncatula] >KEH30680.1 O-acyltransferase WSD1-like protein [Medicago truncatula])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IKTKL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 243 PVTLSTISLSLDQIKEIKTKLKVTINDVVCGMVFYGIRLYMKEMNEKTKRANSTAVVMLN 302

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG Y+  TEM KPE KGLW
Sbjct: 303 TRNIGGYQSLTEMQKPECKGLW 324

[Close]

BLAST of CsaV3_7G005950 vs. NCBI nr
Match: KEH30682.1 (O-acyltransferase WSD1-like protein [Medicago truncatula])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IKTKL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 235 PVTMSTISLSLDQIKEIKTKLKVTINDVVCGMVFYGIRLYMKEMNEKTKRANSTAVVMLN 294

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG Y+  TEM KPE KGLW
Sbjct: 295 TRNIGGYQSLTEMQKPECKGLW 316

[Close]

BLAST of CsaV3_7G005950 vs. NCBI nr
Match: XP_013456651.2 (O-acyltransferase WSD1 [Medicago truncatula])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IKTKL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 243 PVTMSTISLSLDQIKEIKTKLKVTINDVVCGMVFYGIRLYMKEMNEKTKRANSTAVVMLN 302

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG Y+  TEM KPE KGLW
Sbjct: 303 TRNIGGYQSLTEMQKPECKGLW 324

[Close]

BLAST of CsaV3_7G005950 vs. TAIR10
Match: AT5G22490.1 (O-acyltransferase (WSD1-like) family protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04
Identity = 30/89 (33.71%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 11  SLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALT------------ 70
           SL+ IK IK  +++T+NDV+ G+T   L  Y+ +    + E A T+LT            
Sbjct: 239 SLDDIKLIKNAMEMTINDVLLGVTEAALTRYLHQSYDKTNEEAGTSLTPNRQDLLDRIRL 298

Query: 71  ----IVNTRVIGTYRPATEMAKPESKGLW 84
               +VN R  G+   A  MAK  SK  W
Sbjct: 299 RSLIVVNLRPTGSQSIADMMAK-GSKCRW 326

[Close]

BLAST of CsaV3_7G005950 vs. TrEMBL
Match: tr|A0A0A0K3V2|A0A0A0K3V2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G051340 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 60
           MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV
Sbjct: 201 MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 260

Query: 61  NTRVIGTYRPATEMAKPESKGLW 84
           NTRVIGTYRPATEMAKPESKGLW
Sbjct: 261 NTRVIGTYRPATEMAKPESKGLW 283

[Close]

BLAST of CsaV3_7G005950 vs. TrEMBL
Match: tr|A0A1S3C1V4|A0A1S3C1V4_CUCME (O-acyltransferase WSD1-like OS=Cucumis melo OX=3656 GN=LOC103495688 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-34
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1   MPMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIV 60
           MPMNTFTVSFSLN IKKIKTKL VTVNDVITGI FMGLRLYMEE+EKNSGEVAATALTIV
Sbjct: 223 MPMNTFTVSFSLNDIKKIKTKLQVTVNDVITGIIFMGLRLYMEEIEKNSGEVAATALTIV 282

Query: 61  NTRVIGTYRPATEMAKPESKGLW 84
           NTRVIG YR ATEMAKPESKGLW
Sbjct: 283 NTRVIGNYRSATEMAKPESKGLW 305

[Close]

BLAST of CsaV3_7G005950 vs. TrEMBL
Match: tr|A0A072ULU8|A0A072ULU8_MEDTR (O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25485843 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IKTKL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 235 PVTMSTISLSLDQIKEIKTKLKVTINDVVCGMVFYGIRLYMKEMNEKTKRANSTAVVMLN 294

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG Y+  TEM KPE KGLW
Sbjct: 295 TRNIGGYQSLTEMQKPECKGLW 316

[Close]

BLAST of CsaV3_7G005950 vs. TrEMBL
Match: tr|A0A072UXS2|A0A072UXS2_MEDTR (O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25494442 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IKTKL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 243 PVTLSTISLSLDQIKEIKTKLKVTINDVVCGMVFYGIRLYMKEMNEKTKRANSTAVVMLN 302

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG Y+  TEM KPE KGLW
Sbjct: 303 TRNIGGYQSLTEMQKPECKGLW 324

[Close]

BLAST of CsaV3_7G005950 vs. TrEMBL
Match: tr|A0A072UNQ0|A0A072UNQ0_MEDTR (O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25494440 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   PMNTFTVSFSLNYIKKIKTKLDVTVNDVITGITFMGLRLYMEEMEKNSGEVAATALTIVN 61
           P+   T+S SL+ IK+IK+KL VT+NDV+ G+ F G+RLYM+EM + +    +TA+ ++N
Sbjct: 235 PVTLSTISLSLDQIKEIKSKLKVTINDVVCGMVFYGIRLYMKEMNEKTKIANSTAVVMLN 294

Query: 62  TRVIGTYRPATEMAKPESKGLW 84
           TR IG YR   EM KPESKGLW
Sbjct: 295 TRNIGGYRSLMEMQKPESKGLW 316

The following BLAST results are available for this feature:

BLAST of CsaV3_7G005950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43654.1	4.2e-38	100.00	hypothetical protein Csa_7G051340 [Cucumis sativus]	[more]
XP_008455536.1	1.4e-33	92.77	PREDICTED: O-acyltransferase WSD1-like [Cucumis melo]	[more]
XP_013456649.1	2.0e-16	53.66	O-acyltransferase WSD1 isoform X2 [Medicago truncatula] >KEH30680.1 O-acyltransf...	[more]
KEH30682.1	2.0e-16	53.66	O-acyltransferase WSD1-like protein [Medicago truncatula]	[more]
XP_013456651.2	2.0e-16	53.66	O-acyltransferase WSD1 [Medicago truncatula]	[more]

BLAST of CsaV3_7G005950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22490.1	1.7e-04	33.71	O-acyltransferase (WSD1-like) family protein	[more]

BLAST of CsaV3_7G005950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G005950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3V2\|A0A0A0K3V2_CUCSA	2.8e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G051340 PE=4 SV=1	[more]
tr\|A0A1S3C1V4\|A0A1S3C1V4_CUCME	9.2e-34	92.77	O-acyltransferase WSD1-like OS=Cucumis melo OX=3656 GN=LOC103495688 PE=4 SV=1	[more]
tr\|A0A072ULU8\|A0A072ULU8_MEDTR	1.3e-16	53.66	O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25485843 P...	[more]
tr\|A0A072UXS2\|A0A072UXS2_MEDTR	1.3e-16	53.66	O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25494442 P...	[more]
tr\|A0A072UNQ0\|A0A072UNQ0_MEDTR	3.9e-16	53.66	O-acyltransferase WSD1-like protein OS=Medicago truncatula OX=3880 GN=25494440 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G005950.1	CsaV3_7G005950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31650:SF7	SUBFAMILY NOT NAMED	coord: 2..83
None	No IPR available	PANTHER	PTHR31650	FAMILY NOT NAMED	coord: 2..83

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G005950	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G005950	Cucumber (Gy14) v1	cgycucB529
CsaV3_7G005950	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G005950	Cucurbita maxima (Rimu)	cmacucB0686
CsaV3_7G005950	Cucurbita maxima (Rimu)	cmacucB0768
CsaV3_7G005950	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G005950	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G005950	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G005950	Bottle gourd (USVL1VR-Ls)	cuclsiB534
CsaV3_7G005950	Bottle gourd (USVL1VR-Ls)	cuclsiB537
CsaV3_7G005950	Melon (DHL92) v3.5.1	cucmeB546
CsaV3_7G005950	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G005950	Melon (DHL92) v3.6.1	cucmedB533
CsaV3_7G005950	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G005950	Watermelon (Charleston Gray)	cucwcgB562
CsaV3_7G005950	Watermelon (Charleston Gray)	cucwcgB597
CsaV3_7G005950	Watermelon (97103) v1	cucwmB614
CsaV3_7G005950	Watermelon (97103) v1	cucwmB624
CsaV3_7G005950	Watermelon (97103) v2	cucwmbB574