CsaV3_7G003230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G003230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat
Locationchr7 : 2408501 .. 2410236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGATCAAACTAAAAAAAATATGAGGGTTGAGTTGATTCAAGGTAAAGATTGAGATTGATTAAAAAAAAACTATCATTAACCCGACCTAATCTGAAATACCAAACAATCTTATTTAAATTCATCAAAGTTGGGAATGTACCAATTTTAGAGATGGTTTGAAGAAGGAAGAAACTTGTAGAATATCAATAACTTTAGGTGTTGGCGAGGATTAGATATCGGAGCCTTCATCTTCGTTTGATGTGGTAAATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGAGCATACGAACTATTGTGTTAGTTATGTTTGATGGATGGTTTCACAAGTCTCCATTGATTCAATTTAAAAAAGAAAAAAAAAAAAAGATTTTCGACGTCCATTTGTCCAAAGAAACAGCACGAATTTACATTCTAGTACAACTTTATGTATGTAATCAAGTGGTGTTAGTAATTCCTCTCATGAATGGAGATTGAAAAGAATCGCTGATGGATTTTTTTTTGTTGAAAGAAGAAAACATGATATAGCCTTCTATTTGTATGCCTTGAACAAGGGGGGTTTGCAGTTAATGGATTTGCAGTTAATGGATTTGCAGATGAAAATGGTTTTCCAAGACATTTTCACCTTCATCAATTCAATATGGGAATAAAACCTAGGTGCCTATCAATTAAATCCCTTCAATTTAAATTGTTGCTTCAAAAATATAATTCAATGTGAGATAATAAAGTATTATGATTACAAAAGAATTGCAAATCTTTCAAGCATGGTAATAGTTCAAATTTGTTAAAATTGTATCCTTCTAAATAAAAAAGAGTTGAGTTGTACAATTGTTTCAACTTCTA

mRNA sequence

ATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGA

Coding sequence (CDS)

ATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGA

Protein sequence

MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ
Homology
[Close]
BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_004144516.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_7G041310 [Cucumis sativus])

HSP 1 Score: 623.2 bits (1606), Expect = 4.6e-175
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 590.5 bits (1521), Expect = 3.3e-165
Identity = 292/308 (94.81%), Postives = 297/308 (96.43%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_023520705.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.6 bits (1433), Expect = 5.3e-155
Identity = 274/307 (89.25%), Postives = 287/307 (93.49%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHML+SGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+L ACRIHGK +VADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300

Query: 301 QKRFIKQ 308
           Q RF+KQ
Sbjct: 301 QTRFMKQ 307

[Close]
BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_022973156.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 554.3 bits (1427), Expect = 2.6e-154
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N HTLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG ++INGFS DLP+LNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLI--MEMEIEPDEALWGAMLSACRIHGKVDVAD 300
           +L+PGL+HYTCMVDLLGR GQVEEAEKLI  MEMEIEPDEALWGA+LSACRIHGK +VAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQKRFIKQ 308
           RVQ RF+KQ
Sbjct: 301 RVQTRFMKQ 309

[Close]
BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_022927399.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 551.2 bits (1419), Expect = 2.2e-153
Identity = 273/307 (88.93%), Postives = 286/307 (93.16%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFR MLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QKRFIKQ 308
           Q RF+KQ
Sbjct: 301 QTRFMKQ 307

[Close]
BLAST of CsaV3_7G003230 vs. TAIR10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-57
Identity = 113/299 (37.79%), Postives = 179/299 (59.87%), Query Frame = 0 

Query: 11  YAALLDAC----SSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIF 70
           Y  +L AC     + N+L   K+IHA       S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSS 130
                R    ++ +I  ++      ++L  FR M+   K  S +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG +L  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRP 250
           YGVHG   +  ++FE M+  G  P  +TF S+L ACSH GL+E+GK  F  M  +  ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
            ++HY CMVDLLGR+ +++EA K++ +M  EP   +WG++L +CRIHG V++A+R  +R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of CsaV3_7G003230 vs. TAIR10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 211.1 bits (536), Expect = 9.9e-55
Identity = 104/296 (35.14%), Postives = 170/296 (57.43%), Query Frame = 0 

Query: 14  LLDACSSTNNLHTLKQIHALTI-TLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 73
           L+ AC +       K +H ++I    I    +++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++ TLI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  +  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 253
           E    F +M  +   P+ +TF SLL+ACSH G +++G + F  M  ++ + P  +HY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 309
           VDLLGR+G++ EA+  I  M ++P  + WGA+LSACRIH +VD+A  + ++ +  +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511

[Close]
BLAST of CsaV3_7G003230 vs. TAIR10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 208.8 bits (530), Expect = 4.9e-54
Identity = 104/295 (35.25%), Postives = 169/295 (57.29%), Query Frame = 0 

Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           +LL ACS   +L   K++H   I   +    F+   + S Y  C +L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +NT+I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
              L +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 252
           E  +LFE M   G  PD+LTF  +LTAC+H GLI +G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRSGQVEEAEKLIM-EMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIK 307
           +D+LGR+GQ+++A +++  EM  E D  +W ++LS+CRIH  +++ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of CsaV3_7G003230 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-53
Identity = 108/283 (38.16%), Postives = 162/283 (57.24%), Query Frame = 0 

Query: 14  LLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRP 73
           +L+ACS    L   KQ+H+  + L    H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 ALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMV 253
              LFE M+ EG +PD++TF ++++ACSH G +E+G  YF MM  +  L P + HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           DLL R+GQ++EA++ I    I+    LW  +LSAC+ HGK ++
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of CsaV3_7G003230 vs. TAIR10
Match: AT1G68930.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-52
Identity = 99/286 (34.62%), Postives = 161/286 (56.29%), Query Frame = 0 

Query: 11  YAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFAT 70
           + ++L AC     ++  KQIHA  I  +   H ++ + L   Y  C  L  A T+F    
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 71  RRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQ 130
           ++    +  ++  +       +++ IF  M  SG   D +TL   + +C  +SSL  G Q
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392

Query: 131 VHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            HG  + +G    +   N+L+T+YGKCGD+  + ++F+ M  R+ VSW+A+++ Y   G 
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452

Query: 191 FGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYT 250
             E  +LF++MV+ G KPD +T T +++ACS  GL+EKG+ YF +M  E+ + P + HY+
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512

Query: 251 CMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           CM+DL  RSG++EEA + I  M   PD   W  +LSACR  G +++
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEI 558

[Close]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match: sp|Q9STF3|PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.3e-56
Identity = 113/299 (37.79%), Postives = 179/299 (59.87%), Query Frame = 0 

Query: 11  YAALLDAC----SSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIF 70
           Y  +L AC     + N+L   K+IHA       S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSS 130
                R    ++ +I  ++      ++L  FR M+   K  S +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG +L  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRP 250
           YGVHG   +  ++FE M+  G  P  +TF S+L ACSH GL+E+GK  F  M  +  ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
            ++HY CMVDLLGR+ +++EA K++ +M  EP   +WG++L +CRIHG V++A+R  +R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match: sp|Q9LND4|PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-53
Identity = 104/296 (35.14%), Postives = 170/296 (57.43%), Query Frame = 0 

Query: 14  LLDACSSTNNLHTLKQIHALTI-TLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 73
           L+ AC +       K +H ++I    I    +++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++ TLI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  +  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 253
           E    F +M  +   P+ +TF SLL+ACSH G +++G + F  M  ++ + P  +HY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 309
           VDLLGR+G++ EA+  I  M ++P  + WGA+LSACRIH +VD+A  + ++ +  +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511

[Close]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match: sp|Q0WN60|PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 208.8 bits (530), Expect = 8.9e-53
Identity = 104/295 (35.25%), Postives = 169/295 (57.29%), Query Frame = 0 

Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           +LL ACS   +L   K++H   I   +    F+   + S Y  C +L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +NT+I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
              L +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 252
           E  +LFE M   G  PD+LTF  +LTAC+H GLI +G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRSGQVEEAEKLIM-EMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIK 307
           +D+LGR+GQ+++A +++  EM  E D  +W ++LS+CRIH  +++ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.4e-52
Identity = 108/283 (38.16%), Postives = 162/283 (57.24%), Query Frame = 0 

Query: 14  LLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRP 73
           +L+ACS    L   KQ+H+  + L    H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 ALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMV 253
              LFE M+ EG +PD++TF ++++ACSH G +E+G  YF MM  +  L P + HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           DLL R+GQ++EA++ I    I+    LW  +LSAC+ HGK ++
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match: sp|Q9CAA8|PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-51
Identity = 99/286 (34.62%), Postives = 161/286 (56.29%), Query Frame = 0 

Query: 11  YAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFAT 70
           + ++L AC     ++  KQIHA  I  +   H ++ + L   Y  C  L  A T+F    
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 71  RRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQ 130
           ++    +  ++  +       +++ IF  M  SG   D +TL   + +C  +SSL  G Q
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392

Query: 131 VHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            HG  + +G    +   N+L+T+YGKCGD+  + ++F+ M  R+ VSW+A+++ Y   G 
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452

Query: 191 FGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYT 250
             E  +LF++MV+ G KPD +T T +++ACS  GL+EKG+ YF +M  E+ + P + HY+
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512

Query: 251 CMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           CM+DL  RSG++EEA + I  M   PD   W  +LSACR  G +++
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEI 558

[Close]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match: tr|A0A0A0K1F7|A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 3.0e-175
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match: tr|A0A1S3C0K0|A0A1S3C0K0_CUCME (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 2.2e-165
Identity = 292/308 (94.81%), Postives = 297/308 (96.43%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match: tr|A0A2P5FQJ4|A0A2P5FQJ4_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_041860 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 2.5e-121
Identity = 215/303 (70.96%), Postives = 257/303 (84.82%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MP     IPFYA+LL+ACSST NL +LK+IHALT+ L IS H +IR KL S+YA CAQL 
Sbjct: 1   MPSSRYDIPFYASLLEACSSTKNLRSLKRIHALTLKLGISSHDYIRAKLVSSYACCAQLH 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA  +FSFATR+PT+LFNTLIRAHSSL LF QSL IFR MLL+ K IDR TLPPVLKSC 
Sbjct: 61  QANLLFSFATRQPTFLFNTLIRAHSSLNLFVQSLHIFRQMLLAHKPIDRQTLPPVLKSCA 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
            LS+LRLGRQVHGA+L+NGF++DL + NALITMY KCGDL  ARKVFD MP +NE+SWSA
Sbjct: 121 ALSALRLGRQVHGAVLVNGFASDLANSNALITMYAKCGDLVSARKVFDEMPLKNEISWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYG+HG+FGEVF LF+RM E G++PD +TFT++LTACSHGGL EKGKEYF MM  EF
Sbjct: 181 LMAGYGMHGIFGEVFLLFDRMAEVGERPDGVTFTTVLTACSHGGLTEKGKEYFEMMEREF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            +RP L+HYTCMVD+LGR+G+VEEAEKLI+ M+++PDEALW A+L ACRIHGKV+VA+RV
Sbjct: 241 GVRPVLEHYTCMVDMLGRAGRVEEAEKLILGMKMKPDEALWSALLGACRIHGKVEVAERV 300

Query: 301 QKR 304
           +++
Sbjct: 301 EEK 303

[Close]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match: tr|A0A2N9FPD7|A0A2N9FPD7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16653 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.1e-120
Identity = 210/303 (69.31%), Postives = 253/303 (83.50%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MP   +I+PFYA LLDACSS  NL  LK +HA TI L IS H FIRTKL S+YA+CAQL 
Sbjct: 1   MPSTRDIVPFYATLLDACSSAKNLQNLKLLHAKTIRLGISPHDFIRTKLISSYASCAQLH 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA  +FSFATR+PTYLFNTLIRA++SL  FS SLS+FR ML + K IDRHTLP VLKSC 
Sbjct: 61  QANVLFSFATRKPTYLFNTLIRAYASLGFFSHSLSVFRRMLFAAKPIDRHTLPVVLKSCA 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLGRQVHGA L+NGF+ DL + N+LITMY KCGDL  ARKVFDGMP RNEVSWSA
Sbjct: 121 GLSALRLGRQVHGAALVNGFALDLGNSNSLITMYAKCGDLANARKVFDGMPVRNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           +M+GYG+HG+F EVF LF+RM+E G++PD +TFT++LTACSHGGL ++G+EYF MM+  +
Sbjct: 181 MMSGYGMHGVFAEVFGLFDRMLEAGERPDGVTFTAVLTACSHGGLTDRGREYFKMMQGRY 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            +RPGL+HYTCMVD+LGR GQVEEAEKLI  ME+EPDEALW A+L AC+IHGK++VA+RV
Sbjct: 241 AIRPGLEHYTCMVDMLGRVGQVEEAEKLIFGMEMEPDEALWAALLGACKIHGKLEVAERV 300

Query: 301 QKR 304
            ++
Sbjct: 301 AEK 303

[Close]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match: tr|A0A2I4GR45|A0A2I4GR45_9ROSI (pentatricopeptide repeat-containing protein At4g16470-like OS=Juglans regia OX=51240 GN=LOC109010111 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 3.1e-119
Identity = 213/308 (69.16%), Postives = 253/308 (82.14%), Query Frame = 0 

Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MP   +IIP  A LLDACSS   L  LK++H  TI L ISHH FIRTKL S+YA+CAQL 
Sbjct: 1   MPATLDIIPLCATLLDACSSAKTLQNLKRLHCRTIILGISHHDFIRTKLVSSYASCAQLH 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
            A  +FSFATR+PT+LFNTLIRAH+SL LFS SL IF  ML+ GKSIDR+TLPPVLKSC 
Sbjct: 61  HANVLFSFATRQPTFLFNTLIRAHASLGLFSHSLFIFHQMLIIGKSIDRYTLPPVLKSCA 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLGRQVHG +L+NGF+ D  + NALITMY KCGDL  ARKVFD M  +NE+SWSA
Sbjct: 121 GLSALRLGRQVHGIVLVNGFALDTTNSNALITMYAKCGDLVNARKVFDEMSVKNEISWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           +MAGYG++GMF EVF LFERMVE G++PD +TFT LLTACSHGGLIE+GKEYF M+    
Sbjct: 181 MMAGYGMNGMFNEVFELFERMVEVGERPDGVTFTVLLTACSHGGLIERGKEYFEMIERRL 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            +RPGL+HYT MVD+LGR+GQVEEAEKLI+EME+EPDEALWGA+L ACRIHGKV+VA+RV
Sbjct: 241 GVRPGLEHYTSMVDMLGRAGQVEEAEKLILEMEVEPDEALWGALLGACRIHGKVEVAERV 300

Query: 301 QKRFIKQQ 309
            ++  +++
Sbjct: 301 AEKVYEKR 308

The following BLAST results are available for this feature:
BLAST of CsaV3_7G003230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144516.14.6e-175100.00PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
XP_008455480.13.3e-16594.81PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
XP_023520705.15.3e-15589.25pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022973156.12.6e-15488.67pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022927399.12.2e-15388.93pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
BLAST of CsaV3_7G003230 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46790.11.2e-5737.79Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06140.19.9e-5535.14Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G18485.14.9e-5435.25Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33680.12.4e-5338.16Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G68930.11.6e-5234.62pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of CsaV3_7G003230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9STF3|PP265_ARATH2.3e-5637.79Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
sp|Q9LND4|PPR14_ARATH1.8e-5335.14Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
sp|Q0WN60|PPR48_ARATH8.9e-5335.25Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX... [more]
sp|P93005|PP181_ARATH4.4e-5238.16Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
sp|Q9CAA8|PP108_ARATH2.8e-5134.62Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th... [more]
BLAST of CsaV3_7G003230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K1F7|A0A0A0K1F7_CUCSA3.0e-175100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1[more]
tr|A0A1S3C0K0|A0A1S3C0K0_CUCME2.2e-16594.81pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
tr|A0A2P5FQJ4|A0A2P5FQJ4_9ROSA2.5e-12170.96Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_041860 PE=4 ... [more]
tr|A0A2N9FPD7|A0A2N9FPD7_FAGSY2.1e-12069.31Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16653 PE=4 SV=1[more]
tr|A0A2I4GR45|A0A2I4GR45_9ROSI3.1e-11969.16pentatricopeptide repeat-containing protein At4g16470-like OS=Juglans regia OX=5... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G003230.1CsaV3_7G003230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 236..308
e-value: 1.3E-12
score: 50.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 73..235
e-value: 3.1E-35
score: 124.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 147..174
e-value: 5.4E-4
score: 18.0
coord: 249..273
e-value: 1.4E-4
score: 19.8
coord: 176..210
e-value: 7.7E-8
score: 30.1
coord: 212..238
e-value: 0.0015
score: 16.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..221
e-value: 1.5E-11
score: 44.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 76..104
e-value: 0.026
score: 14.7
coord: 249..273
e-value: 4.4E-5
score: 23.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..275
score: 8.024
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..308
score: 6.873
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 12.025
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..239
score: 7.892
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..173
score: 8.638
NoneNo IPR availablePANTHERPTHR24015:SF291SUBFAMILY NOT NAMEDcoord: 56..304
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 56..304

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G003230Cucsa.148890Cucumber (Gy14) v1cgycucB226
CsaV3_7G003230CsGy7G003000Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G003230Cucumber (Chinese Long) v3cuccucB099
CsaV3_7G003230Silver-seed gourdcarcucB0232
CsaV3_7G003230Silver-seed gourdcarcucB1114
CsaV3_7G003230Cucumber (Gy14) v2cgybcucB094
CsaV3_7G003230Cucumber (Gy14) v2cgybcucB349
CsaV3_7G003230Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G003230Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G003230Cucurbita maxima (Rimu)cmacucB0684
CsaV3_7G003230Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G003230Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G003230Cucurbita moschata (Rifu)cmocucB0672
CsaV3_7G003230Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G003230Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G003230Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G003230Wild cucumber (PI 183967)cpicucB116
CsaV3_7G003230Wild cucumber (PI 183967)cpicucB415
CsaV3_7G003230Wild cucumber (PI 183967)cpicucB419
CsaV3_7G003230Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G003230Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G003230Melon (DHL92) v3.5.1cucmeB532
CsaV3_7G003230Melon (DHL92) v3.5.1cucmeB547
CsaV3_7G003230Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G003230Melon (DHL92) v3.6.1cucmedB523
CsaV3_7G003230Melon (DHL92) v3.6.1cucmedB535
CsaV3_7G003230Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G003230Watermelon (Charleston Gray)cucwcgB570
CsaV3_7G003230Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G003230Watermelon (97103) v1cucwmB629
CsaV3_7G003230Watermelon (97103) v1cucwmB633
CsaV3_7G003230Watermelon (97103) v1cucwmB634
CsaV3_7G003230Watermelon (97103) v2cucwmbB548
CsaV3_7G003230Watermelon (97103) v2cucwmbB549
CsaV3_7G003230Wax gourdcucwgoB694
CsaV3_7G003230Wax gourdcucwgoB695
CsaV3_7G003230Wax gourdcucwgoB703