CsaV3_7G002590 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G002590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontransmembrane protein 256 homolog
Locationchr7 : 2017504 .. 2019607 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTGAATTCTCTTTTTACGATTCACGATTCATTAAAACAAATGAGATTACTCAGAATTCTCCTCTTTTACCTTTGGTTCTTTTGCTTAGAAAAGTCAACCCATTGACCGGTCAGATGAACAGCGCCGGTCAAATCTTCAGGTTCTGCAGATGAACAAAAGGGAGAATGAAATCAAACAAGCAGGAGAAGACGACCCTTTTTCCTTTTCCTTTTTCTTTTGCATTGTCTTGGGCCGATATGTCGGCTGTGGACTCAAAGCAAGGAGAGCGACGGGTCGTTTTAACTTCAAATCAACGTCATCATATGGGGAAAAAAAAAGAAAGAACCTTTCACAAAATCCCTCGTCGAAGCAAACCCAAAAGCAAAGAACAAGATGAACCCACTTTACTGGCACAAAGTTGCTGCGATTTCTGGTAAAGTGGTTCTCCCTTCGATTCTCTTGTTGTTGCTTCGCGATTATGATTTTCGATTTGTGATTTGATTTTCGCTTTAAACAGGCGTTGCAGCTCTCGGATTGGGCACGTACGGCGCTCATGGTTTCAAACCCAAAAATCCAGCTTATAAAGAGGTTGATTTGCTTCATCTTTGATTCGATTTCTATGATTTGTTCTTCGATTTGATTTTGATTGTTGGTTTGGTTTCAACGTTGTGAAGGTTTGGCAAACGGCGTCTCTTTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTAACATTGTAAGTTTGTAGCACCATCGTTTTTGTATATAAATTTTTTCTGATCATTTTGGGCAAAGTTTATTGATAATCCAAACTTTTAACAAACGATTATTCAGCTAGTCTTACCTGAAAGTAAGCCCCAATTTTAAAGTTTTGGGTATGGTGGAATTCAAAGCACGAGATGATGTTAGGTTTCTTGGAATGTTCAAACCCACAAATAGAACTACTTGTATGTCTAACCCTAACTTTTTTTTTTTTTGGTTTTTTTGTTGGAAAGGATTACTTTCTCACAATTTTTTTATAATCTACAATTGCGAAAACATAAATGAGGTCTTGAAAACGGTTTTGTTTGTCGTTTTGGTTGATTATCAAATAGTTATCAAATGAGACGTTACATCAAATGAAACGTTACATCAAATGAGACGTTACATCAAATGAGACGTTGCATCAAATGAGACGTTACATTGTAGTTTAGGTTGGCAGATATTAATATTGAGGCTTAACTTACAAGTCTAGGTTCTCTTTAGAAGGACAAAGGAAATAAAAAGGTCTTAGCATATGTTAGGTAAAATATTACACAAATAGAAATACAGAAAAATTAGTACAAACACAATTATGCATAGGTCAATGTAAATGGTACTCATTCACATCACATGTTTACAAATATTTTATAAGATAAAGTTACTCATCCAAAATTCTCCTACTATTTACTTTGATTGGTCCTTTGATTCTTTTCCCTCCTTTTTTCTTTTGTGACAGTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTAAGTTACCCGTTTTCTTTTCCATCTTCTATGTCTGTTTGGATCTCTTCTTTTTGCCTCTAAGTTCCTATGATTTATCTTTTACAACATTTCATATTCAAAATTTCCCCTACAACATTTTATTGAAATGATAAAAGTATCCCGCAGAATACTTGATCGACCGAGTGTAATTAGATGAAAAAGAATACATAGTAAGAGATCGATAATGAAGTGTTTAACACAAAAGCATTTGATAAAATAAACCACTTATTGGTTACTTTTTTGCTAAGCACTTAGTGAAGTACTTTTCCATTTCAAATATATCCAAAATTTGTATACTAGATTTGATTTCTGTTACTTTTATTGGGCAAAGATGGCTCTGGATTCAATTTGAGATCTCCACCAGTTTCCTTCCTTTTGGCAATTCTCCACATTGAACTCATCTGTTTGTTATGTTTAAGAGATGAATAAGAATGTGTGGTTGCAACTTGCATTGCAGGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAA

mRNA sequence

ATGCAATCTGAATTCTCTTTTTACGATTCACGATTCATTAAAACAAATGAGATTACTCAGAATTCTCCTCTTTTACCTTTGGTTCTTTTGCTTAGAAAAGTCAACCCATTGACCGGTCAGATGAACAGCGCCGGTCAAATCTTCAGGCGTTGCAGCTCTCGGATTGGGCACGTTTGGCAAACGGCGTCTCTTTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTAACATTTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAA

Coding sequence (CDS)

ATGCAATCTGAATTCTCTTTTTACGATTCACGATTCATTAAAACAAATGAGATTACTCAGAATTCTCCTCTTTTACCTTTGGTTCTTTTGCTTAGAAAAGTCAACCCATTGACCGGTCAGATGAACAGCGCCGGTCAAATCTTCAGGCGTTGCAGCTCTCGGATTGGGCACGTTTGGCAAACGGCGTCTCTTTATCATTTGGTTCACACAGCGGCTCTTCTTGCTGCCCCGTCGACCAAGAACCCTAACATTTTTGGAGGCCTTTTGACGGCTGGAATCCTTGCATTTTCTGGCACGTGCTATACTGTGGCTCTTCTTGAAGATAGAAAGTATTCTTCTTTAGCTCCATTTGGTGGCTTTGCTTTCATTGGTGCATGGGCTAGCTTGCTCTTCTAA

Protein sequence

MQSEFSFYDSRFIKTNEITQNSPLLPLVLLLRKVNPLTGQMNSAGQIFRRCSSRIGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPFGGFAFIGAWASLLF
BLAST of CsaV3_7G002590 vs. NCBI nr
Match: XP_004144544.1 (PREDICTED: transmembrane protein 256 homolog [Cucumis sativus] >KGN43418.1 hypothetical protein Csa_7G032280 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF
Sbjct: 38  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 97

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 98  GGFAFIGAWASLLF 111

BLAST of CsaV3_7G002590 vs. NCBI nr
Match: XP_008462078.1 (PREDICTED: transmembrane protein 256 homolog [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF
Sbjct: 83  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 142

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 143 GGFAFIGAWASLLF 156

BLAST of CsaV3_7G002590 vs. NCBI nr
Match: XP_022953076.1 (transmembrane protein 256 homolog [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 47  IFRRCSSRIGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 106
           +F+  +     VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL
Sbjct: 27  VFKPQNPAYKEVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 86

Query: 107 EDRKYSSLAPFGGFAFIGAWASLLF 132
           EDRKYS+LAPFGGFAFIGAWASLLF
Sbjct: 87  EDRKYSTLAPFGGFAFIGAWASLLF 111

BLAST of CsaV3_7G002590 vs. NCBI nr
Match: XP_022969303.1 (transmembrane protein 256 homolog [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 47  IFRRCSSRIGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 106
           +F+  +     VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL
Sbjct: 27  VFKPQNPAYKEVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 86

Query: 107 EDRKYSSLAPFGGFAFIGAWASLLF 132
           EDRKYS+LAPFGGFAFIGAWASLLF
Sbjct: 87  EDRKYSTLAPFGGFAFIGAWASLLF 111

BLAST of CsaV3_7G002590 vs. NCBI nr
Match: XP_023554646.1 (transmembrane protein 256 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 47  IFRRCSSRIGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 106
           +F+  +     VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL
Sbjct: 27  VFKPQNPAYKEVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 86

Query: 107 EDRKYSSLAPFGGFAFIGAWASLLF 132
           EDRKYS+LAPFGGFAFIGAWASLLF
Sbjct: 87  EDRKYSTLAPFGGFAFIGAWASLLF 111

BLAST of CsaV3_7G002590 vs. TAIR10
Match: AT2G04900.1 (unknown protein)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-32
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 47  IFRRCSSRIGHVWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALL 106
           +F+  +     VWQTASLYHLVHTAAL++APSTK PNIFGGLLTAGI+AFSGTCY VAL 
Sbjct: 44  VFKPENPSYKQVWQTASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSGTCYMVALR 103

Query: 107 EDRKYSSLAPFGGFAFIGAWASLLF 132
           EDRK+S+LAPFGGFAFI AWA+LLF
Sbjct: 104 EDRKFSTLAPFGGFAFIAAWATLLF 128

BLAST of CsaV3_7G002590 vs. Swiss-Prot
Match: sp|A4K526|TM256_BUFGR (Transmembrane protein 256 homolog OS=Bufo gargarizans OX=30331 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           +++T + YH +H+ ALLA P  + P + G LLT+GI+ FSGT Y  AL  D   +  AP+
Sbjct: 41  LFETGNRYHFLHSLALLAVPHCRRPLLAGSLLTSGIVLFSGTFYYQALSGDPTLTKAAPY 100

Query: 118 GGFAFIGAWASL 130
           GG   I  WA++
Sbjct: 101 GGTLLILGWAAM 112

BLAST of CsaV3_7G002590 vs. Swiss-Prot
Match: sp|Q568J8|TM256_DANRE (Transmembrane protein 256 OS=Danio rerio OX=7955 GN=tmem256 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.1e-07
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           ++ TA+ YH  H+ ALL A   + P + G +L  G+  F G  Y   L  D  +S LAP 
Sbjct: 41  LFDTANKYHFYHSLALLGAARCRKPALAGVILLTGMGCFCGPLYHQPLTNDPSFSKLAPI 100

Query: 118 GGFAFIGAWASL 130
           GG   I  WA++
Sbjct: 101 GGSLLIVGWAAM 112

BLAST of CsaV3_7G002590 vs. TrEMBL
Match: tr|A0A1S3CG60|A0A1S3CG60_CUCME (transmembrane protein 256 homolog OS=Cucumis melo OX=3656 GN=LOC103500518 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF
Sbjct: 83  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 142

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 143 GGFAFIGAWASLLF 156

BLAST of CsaV3_7G002590 vs. TrEMBL
Match: tr|A0A0A0K1T6|A0A0A0K1T6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032280 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF
Sbjct: 38  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 97

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 98  GGFAFIGAWASLLF 111

BLAST of CsaV3_7G002590 vs. TrEMBL
Match: tr|V4TKJ4|V4TKJ4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017136mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAAL+AAP TKNPNIFGGLLTAGILAFSGTCYTVA LEDRKYS+LAPF
Sbjct: 63  VWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPF 122

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 123 GGFAFIGAWASLLF 136

BLAST of CsaV3_7G002590 vs. TrEMBL
Match: tr|A0A2H5PLC7|A0A2H5PLC7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147120 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAAL+AAP TKNPNIFGGLLTAGILAFSGTCYTVA LEDRKYS+LAPF
Sbjct: 63  VWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPF 122

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 123 GGFAFIGAWASLLF 136

BLAST of CsaV3_7G002590 vs. TrEMBL
Match: tr|A0A067ETK0|A0A067ETK0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032640mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 58  VWQTASLYHLVHTAALLAAPSTKNPNIFGGLLTAGILAFSGTCYTVALLEDRKYSSLAPF 117
           VWQTASLYHLVHTAAL+AAP TKNPNIFGGLLTAGILAFSGTCYTVA LEDRKYS+LAPF
Sbjct: 63  VWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPF 122

Query: 118 GGFAFIGAWASLLF 132
           GGFAFIGAWASLLF
Sbjct: 123 GGFAFIGAWASLLF 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004144544.11.7e-33100.00PREDICTED: transmembrane protein 256 homolog [Cucumis sativus] >KGN43418.1 hypot... [more]
XP_008462078.11.7e-33100.00PREDICTED: transmembrane protein 256 homolog [Cucumis melo][more]
XP_022953076.12.2e-3387.06transmembrane protein 256 homolog [Cucurbita moschata][more]
XP_022969303.12.2e-3387.06transmembrane protein 256 homolog [Cucurbita maxima][more]
XP_023554646.12.2e-3387.06transmembrane protein 256 homolog [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G04900.13.9e-3276.47unknown protein[more]
Match NameE-valueIdentityDescription
sp|A4K526|TM256_BUFGR6.8e-1043.06Transmembrane protein 256 homolog OS=Bufo gargarizans OX=30331 PE=3 SV=1[more]
sp|Q568J8|TM256_DANRE9.1e-0737.50Transmembrane protein 256 OS=Danio rerio OX=7955 GN=tmem256 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3CG60|A0A1S3CG60_CUCME1.1e-33100.00transmembrane protein 256 homolog OS=Cucumis melo OX=3656 GN=LOC103500518 PE=4 S... [more]
tr|A0A0A0K1T6|A0A0A0K1T6_CUCSA1.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032280 PE=4 SV=1[more]
tr|V4TKJ4|V4TKJ4_9ROSI8.0e-3294.59Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017136mg PE=4 ... [more]
tr|A0A2H5PLC7|A0A2H5PLC7_CITUN8.0e-3294.59Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147120 PE=4 SV=1[more]
tr|A0A067ETK0|A0A067ETK0_CITSI8.0e-3294.59Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032640mg PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006696DUF423
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002590.1CsaV3_7G002590.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006696Protein of unknown function DUF423PFAMPF04241DUF423coord: 57..119
e-value: 1.4E-15
score: 57.2
IPR006696Protein of unknown function DUF423PANTHERPTHR43461FAMILY NOT NAMEDcoord: 57..131

The following gene(s) are paralogous to this gene:

None