CsaV3_7G001890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G001890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 1542757 .. 1543960 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACTAAACATAAAAGAAAGGATGAGTATATACTCAATAAGCACTGGGCTCTCGGTGATCTCGAAGGAACACCCTAAAAGAGCTTAAAAGAGAGTCGGGTTGTAAGTGATTCCAAGGGACACCCATATGGTATGACTGTTTAACGGTAAATCTAATATAACATCCTACGTAAATATCTAATATAACATCCTACGTAAATATATCGTATCGTAAATACGCAAGTCATACATGTTGCCTTTAACTACCTTAATACATGATACAATTCTAATGTGGATTCATACATGTTGTAACTACCTTAATAATATATGCATCCAACTTGAACGTGGGGATCCAATAGAAAAATTTGATATTAGCTATACAAAATTTAATCTTTAATCTTGGCCGCGGTTGAAATCCAATTCAACTTTGGTTGAGAGAATTTTTCCGCTCAATTTTCCAATTAAAACTTTCCAAACCTTCAAGCAAAAATATCTCATTTTAAAATCAATCCAAGCAATTCTCACCAAAGGAGTGGCTCAAAAACAGAGAACGGCTTGATAAGGCAGTCGGCTCGGGCGCACAGCTTGCGAAAGAGAACCGGCTCGAAATGCTTGCACGCGTGCGGCTAGGTAGTCGGCTTGCGGAAGAGAGCCGGCTCGAAATGTTTGCACGCATGCAGCTTGGAGACGTGCAGCTTGATCCTGACGGAATGGCTCGTGTAACGGCTCGGGTCTAAAACGCGGCTTGATGGAGAAGCTTTAGCTGGGACGCGCGGCTCGGACTAAGGATCGGCTCAGGTCCAACGGAGCGTGTGTCTTTGGTTCGAACGGCTCACACGAAAAATATGCGACTCGAGCTTGAAGTTGACGGAGAAGACTATCGCACGGTTGGGAGGTTGTCGGCTCGGATCTGGAACGCGGCTGGCTTCGACGGAGCGGCGACAGAACGCTGCAGACGCGAAGACGAAGAGGTTACGGCTGCCGGTAGGACACGATCAACACGACGGCTTCGTGTGCGACGAGCGGCTGGCTTCGACGATGAAGAAGACACGCGAAGGAGATGGCTTGGGTAGAAGGGTGAAGAGCGGCGGCTAGGGTTGGAGAGGAAGGAAGAAATACAGGTTGAAGAAGATGAATAGTGAATGGTGTACACGTTTCACGAGGATAAAAAAATATATGAATAATATTAATAATAAAATACTATTATTATTAGTTTTCCTTAAAA

mRNA sequence

ATGCGACTCGAGCTTGAAGTTGACGGAGAAGACTATCGCACGGTTGGGAGGTTGTCGGCTCGGATCTGGAACGCGGCTGGCTTCGACGGAGCGGCGACAGAACGCTGCAGACGCGAAGACGAAGAGGTTACGGCTGCCGGTAGGACACGATCAACACGACGGCTTCGTGTGCGACGAGCGGCTGGCTTCGACGATGAAGAAGACACGCGAAGGAGATGGCTTGGGTAG

Coding sequence (CDS)

ATGCGACTCGAGCTTGAAGTTGACGGAGAAGACTATCGCACGGTTGGGAGGTTGTCGGCTCGGATCTGGAACGCGGCTGGCTTCGACGGAGCGGCGACAGAACGCTGCAGACGCGAAGACGAAGAGGTTACGGCTGCCGGTAGGACACGATCAACACGACGGCTTCGTGTGCGACGAGCGGCTGGCTTCGACGATGAAGAAGACACGCGAAGGAGATGGCTTGGGTAG

Protein sequence

MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRAAGFDDEEDTRRRWLG
Homology
[Close]
BLAST of CsaV3_7G001890 vs. NCBI nr
Match: KGN43343.1 (hypothetical protein Csa_7G024170 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA 60
          MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA
Sbjct: 1  MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA 60

Query: 61 AGFDDEEDTRRRWLG 76
          AGFDDEEDTRRRWLG
Sbjct: 61 AGFDDEEDTRRRWLG 75

[Close]
BLAST of CsaV3_7G001890 vs. TrEMBL
Match: tr|A0A0A0K1K2|A0A0A0K1K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024170 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA 60
          MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA
Sbjct: 1  MRLELEVDGEDYRTVGRLSARIWNAAGFDGAATERCRREDEEVTAAGRTRSTRRLRVRRA 60

Query: 61 AGFDDEEDTRRRWLG 76
          AGFDDEEDTRRRWLG
Sbjct: 61 AGFDDEEDTRRRWLG 75

The following BLAST results are available for this feature:
BLAST of CsaV3_7G001890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43343.12.2e-33100.00hypothetical protein Csa_7G024170 [Cucumis sativus][more]
BLAST of CsaV3_7G001890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K1K2|A0A0A0K1K2_CUCSA1.4e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G001890.1CsaV3_7G001890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G001890CSPI07G01770Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G001890Cucumber (Chinese Long) v3cuccucB187
CsaV3_7G001890Cucumber (Chinese Long) v3cuccucB214
CsaV3_7G001890Silver-seed gourdcarcucB0232
CsaV3_7G001890Silver-seed gourdcarcucB0386
CsaV3_7G001890Silver-seed gourdcarcucB1114
CsaV3_7G001890Cucumber (Gy14) v2cgybcucB196
CsaV3_7G001890Cucumber (Gy14) v2cgybcucB306
CsaV3_7G001890Cucumber (Gy14) v2cgybcucB348
CsaV3_7G001890Cucumber (Gy14) v1cgycucB116
CsaV3_7G001890Cucumber (Gy14) v1cgycucB160
CsaV3_7G001890Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G001890Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G001890Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G001890Cucurbita maxima (Rimu)cmacucB0766
CsaV3_7G001890Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G001890Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G001890Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G001890Cucurbita moschata (Rifu)cmocucB0753
CsaV3_7G001890Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G001890Cucurbita pepo (Zucchini)cpecucB0368
CsaV3_7G001890Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G001890Cucurbita pepo (Zucchini)cpecucB0952
CsaV3_7G001890Wild cucumber (PI 183967)cpicucB375
CsaV3_7G001890Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G001890Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G001890Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G001890Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G001890Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G001890Watermelon (97103) v1cucwmB634
CsaV3_7G001890Watermelon (97103) v2cucwmbB549
CsaV3_7G001890Wax gourdcucwgoB695