CsaV3_7G000220 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G000220
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	nuclear polyadenylated RNA-binding protein 3-like
Location	chr7 : 368550 .. 370575 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTAAAATTTTGATGCAATTACTGTACCACAGGAAAATTCCTCCAAAAGTGCTTAAAACCCCCAAGGGGAAGGAAATTGGGGAAAAGAGACTAATGAGCAAACCAAGCGTGGTCCGCACGGAAGATTGGCACACAAGCTTAGTTGCACACCACAAAAGGTAACAAATTCGGCATACGTGGCTTTCTATCATTGGTCAATGCACGTCAGTCACGTGACCGCGTTTTGACACCTCATAAATTCTACCCTTTTTATATGTAATGTCATTGCAATTCTTGTGGAAAAAGGAAAAGAGAAGAACAACTGGAAAACCAAAACAACAACCTACAATTTCTCCTCTCGAATCAATTTCACCAATCGGACCCATCATGGAGGCCATTTCTGGATCATCATCCTCTTCTTCTTCTTCTATGGAATTCGTTTTCTATGATGACTTCGAATATGAATTCGTTGAAGACATCGAACGTCTTTCCAACTGGGAGTTGCTCGATGCTTTTGATGCGGATTCGGAAATGGGCGGAAATGGAGGCGAAGAACAAGGGGGAAATTGCAGCGTTGACGATAATGTTTCACAAGATCTTCGAGAGATGATTTCTCCCGTTCTCGCTGTGCCGATTTCGCTTGTGGAGGATCGAATCGACTGTTCTTTGGAAGATGCTTATTTCCTTCACAATCAAGCGGAAGACGGTTTTGCGTATGGTTATAACGATGCGGAGGAGGAAGATGAAGTGGATGATGATGAGGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTTAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACCAAGCCAGGATGTGTCCGCGGTAAACATGGACTCGGTTTGAAACACAGTTATTAGAACAAGAACAGATTCAAGAACTCCGCTTGCCTTAAGAAGGTAAACGACTCTAATTCCAATTTGGCGTAGAAGTAAATACTAAATAGATGTAATAATTAAACCCTAAAAACTAGTAGTTTCGTTTGTTGTAAGTAGCAGCAGTACTAGTAATAGTCCCTGTAAATCCAATTTGCCAGGATGGATTTCTGTTGATTTACAAGGCTTGGATTAATGAAGAACACATTAACTCAAATTTCATCTCTGTGAAATTAATCAATCAGCTGTCTATTCTCCTAACTCCTAAGTTATGTCCTCCACGAGAATTGTTATGCTAATTGCTATATTCTTTGTTGGATTAGCTGTTTTGTTGTTTTGTTTGCTACACTCTAAATTCATCTTTTGTGGTTCATGTAATTTGTCACAAAAATCTGGAATCTGGGCCATACCATCTGAACAGTTGATAATGATTTCATATCATTTCTCTAAGTATGTTAAATGGAAGCCAAGTGTGTGATCAAAACTGATGAGGCGTCATTGTTCTTGGTACAGATGTCTTATTTCCTTCTCATATAAGAACCTTCACAAAAACTTAGAACGTAGTAAAATGCTATTGTAGATCATAAATAAACTCCATTTCTTTAATGTTTATAGTTGAAGTAATTGGTTTTAATGGATGGGGTCCCATATTTTCACGAAAAAAGTAAGACTTCTCTTAGTGATAATAAGTAATTAAACCATAGCTTCCATTGTCGAAATATGGGATGTATAGTTTTCCATTTTTGTGTCATTATGTGGATCCCCCGACTTCTACATTAATGTTGGATACATCCTTCCATTTGCTTTCTCTACGTTGAGAGTCCCACAATGTAATACATTGGTTTGGACGATACCCGTGACACAAAAATATTCACAACTTTCCTACTAATCTACACAAAGTTGTAATTTATATTTATAAATGTAGTAAAATTTCATATCCCTTCAAAGATTGATATAGACTTTCCTTAGATTCTATCATTATTATTATACACATTTGAAATTCAATTTTGCTATGTTTTTGTAAATGTTTTGGTTTATCTTTCAATATACTTTTAATTTGTTTTTAATAAGTTAGTT

mRNA sequence

ATGTCATTGCAATTCTTGTGGAAAAAGGAAAAGAGAAGAACAACTGGAAAACCAAAACAACAACCTACAATTTCTCCTCTCGAATCAATTTCACCAATCGGACCCATCATGGAGGCCATTTCTGGATCATCATCCTCTTCTTCTTCTTCTATGGAATTCGTTTTCTATGATGACTTCGAATATGAATTCGTTGAAGACATCGAACGTCTTTCCAACTGGGAGTTGCTCGATGCTTTTGATGCGGATTCGGAAATGGGCGGAAATGGAGGCGAAGAACAAGGGGGAAATTGCAGCGTTGACGATAATGTTTCACAAGATCTTCGAGAGATGATTTCTCCCGTTCTCGCTGTGCCGATTTCGCTTGTGGAGGATCGAATCGACTGTTCTTTGGAAGATGCTTATTTCCTTCACAATCAAGCGGAAGACGGTTTTGCGTATGGTTATAACGATGCGGAGGAGGAAGATGAAGTGGATGATGATGAGGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTTAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACCAAGCCAGGATGTGTCCGCGGTAAACATGGACTCGGTTTGAAACACAGTTATTAG

Coding sequence (CDS)

ATGTCATTGCAATTCTTGTGGAAAAAGGAAAAGAGAAGAACAACTGGAAAACCAAAACAACAACCTACAATTTCTCCTCTCGAATCAATTTCACCAATCGGACCCATCATGGAGGCCATTTCTGGATCATCATCCTCTTCTTCTTCTTCTATGGAATTCGTTTTCTATGATGACTTCGAATATGAATTCGTTGAAGACATCGAACGTCTTTCCAACTGGGAGTTGCTCGATGCTTTTGATGCGGATTCGGAAATGGGCGGAAATGGAGGCGAAGAACAAGGGGGAAATTGCAGCGTTGACGATAATGTTTCACAAGATCTTCGAGAGATGATTTCTCCCGTTCTCGCTGTGCCGATTTCGCTTGTGGAGGATCGAATCGACTGTTCTTTGGAAGATGCTTATTTCCTTCACAATCAAGCGGAAGACGGTTTTGCGTATGGTTATAACGATGCGGAGGAGGAAGATGAAGTGGATGATGATGAGGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTTAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACCAAGCCAGGATGTGTCCGCGGTAAACATGGACTCGGTTTGAAACACAGTTATTAG

Protein sequence

MSLQFLWKKEKRRTTGKPKQQPTISPLESISPIGPIMEAISGSSSSSSSSMEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAEEEDEVDDDEDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

Homology

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BLAST of CsaV3_7G000220 vs. NCBI nr
Match: XP_011658549.1 (PREDICTED: uncharacterized protein LOC101212092 [Cucumis sativus] >KGN43162.1 hypothetical protein Csa_7G004150 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 5.7e-82
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 54  VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP 113
           VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP
Sbjct: 18  VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP 77

Query: 114 VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW 173
           VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW
Sbjct: 78  VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW 137

Query: 174 SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 138 SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 187

[Close]

BLAST of CsaV3_7G000220 vs. NCBI nr
Match: XP_008448068.1 (PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 161/169 (95.27%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 56  YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVL 115
           YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQG N SVDDNVSQDLREMISPVL
Sbjct: 26  YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGENYSVDDNVSQDLREMISPVL 85

Query: 116 AVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDA-XXXXXXXXXXXXXXXXDELVPWS 175
           AVPISLVEDRID SLEDA FLHNQAEDGFAYGY+DA  XXXXXXXXXXXXXXX ELVPWS
Sbjct: 86  AVPISLVEDRIDGSLEDACFLHNQAEDGFAYGYDDAEEXXXXXXXXXXXXXXXXELVPWS 145

Query: 176 VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 146 VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 194

[Close]

BLAST of CsaV3_7G000220 vs. NCBI nr
Match: XP_023553634.1 (histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 2.6e-58
Identity = 137/178 (76.97%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 55  FYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPV 114
           FYDDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DLRE+ISPV
Sbjct: 19  FYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREIISPV 78

Query: 115 LAVPISLVEDRIDCSLEDAYFLHNQAEDGFA---------YGYNDAXXXXXXXXXXXXXX 174
           + VPISL EDRI   LED YFL N AEDGFA               XXXXXXXXXXXXXX
Sbjct: 79  VVVPISLAEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138

Query: 175 XXDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           XXDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 139 XXDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 196

[Close]

BLAST of CsaV3_7G000220 vs. NCBI nr
Match: XP_022969470.1 (uncharacterized protein LOC111468462 [Cucurbita maxima])

HSP 1 Score: 233.4 bits (594), Expect = 7.4e-58
Identity = 136/173 (78.61%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 57  DDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLA 116
           DDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DL EMISPV+ 
Sbjct: 24  DDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLLEMISPVVV 83

Query: 117 VPISLVEDRIDCSLEDAYFLHNQAEDGFAY------GYNDAXXXXXXXXXXXXXXXXDEL 176
           VPISL EDRI   LED YFL N AEDGFAY           XXXXXXXXXXXXXXXXDEL
Sbjct: 84  VPISLAEDRIFDPLEDVYFLQNHAEDGFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXDEL 143

Query: 177 VPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           VPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 144 VPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 196

[Close]

BLAST of CsaV3_7G000220 vs. NCBI nr
Match: XP_022135642.1 (uncharacterized protein LOC111007551 [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 3.2e-45
Identity = 103/168 (61.31%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 62  EFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLAVPISL 121
           EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL
Sbjct: 27  EFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISL 86

Query: 122 VEDRIDCSLEDAYFLHNQAEDGFAYGYN------DAXXXXXXXXXXXXXXXXDELVPWSV 181
            EDRID  +    +L    EDGFAYGY+      +                 DELVPWSV
Sbjct: 87  AEDRIDDRV--GVYLLQDLEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSV 146

Query: 182 SDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           S KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 147 SGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 189

[Close]

BLAST of CsaV3_7G000220 vs. TAIR10
Match: AT4G34630.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 186 KLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK 221
           KLGKR   K+Y SK SPFL  KPG VRGKHGLG+K
Sbjct: 164 KLGKRAIAKVYASKISPFL--KPGIVRGKHGLGMK 196

[Close]

BLAST of CsaV3_7G000220 vs. TAIR10
Match: AT5G48420.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 182 QRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK 221
           QR+RK GKR F K    K+  + ++  KPGCV GKHGL +K
Sbjct: 99  QRIRKTGKRTFWKNVTLKKKKYSYSQLKPGCVHGKHGLDIK 139

[Close]

BLAST of CsaV3_7G000220 vs. TrEMBL
Match: tr|A0A0A0K4F3|A0A0A0K4F3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.7e-82
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 54  VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP 113
           VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP
Sbjct: 18  VFYDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISP 77

Query: 114 VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW 173
           VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW
Sbjct: 78  VLAVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPW 137

Query: 174 SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 138 SVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 187

[Close]

BLAST of CsaV3_7G000220 vs. TrEMBL
Match: tr|A0A1S3BJG2|A0A1S3BJG2_CUCME (uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 161/169 (95.27%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 56  YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVL 115
           YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQG N SVDDNVSQDLREMISPVL
Sbjct: 26  YDDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGENYSVDDNVSQDLREMISPVL 85

Query: 116 AVPISLVEDRIDCSLEDAYFLHNQAEDGFAYGYNDA-XXXXXXXXXXXXXXXXDELVPWS 175
           AVPISLVEDRID SLEDA FLHNQAEDGFAYGY+DA  XXXXXXXXXXXXXXX ELVPWS
Sbjct: 86  AVPISLVEDRIDGSLEDACFLHNQAEDGFAYGYDDAEEXXXXXXXXXXXXXXXXELVPWS 145

Query: 176 VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 146 VSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 194

[Close]

BLAST of CsaV3_7G000220 vs. TrEMBL
Match: tr|A0A2I4E7D2|A0A2I4E7D2_9ROSI (uncharacterized protein LOC108986937 OS=Juglans regia OX=51240 GN=LOC108986937 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24
Identity = 79/181 (43.65%), Postives = 98/181 (54.14%), Query Frame = 0


Query: 57  DDFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLA 116
           +D ++  VE+ + LS+WE ++A DADSE G  G E          N    L   IS  + 
Sbjct: 20  EDLDFVQVEE-QGLSHWEFVNASDADSERGEQGDEIDEDKEDCIGNGIGSLDSDISTPIC 79

Query: 117 VPISLVEDR-IDCSLE-----DAYFLHNQAEDGFAYGYNDA--------XXXXXXXXXXX 176
           +  S +E+R +D         DA   +     GFA GY D                    
Sbjct: 80  LKNSQMENRDVDHQNPHHHDVDAGVKYEAGYCGFARGYEDGGRGEEQFDNEGDEDDDAND 139

Query: 177 XXXXXDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHS 224
                DELVPW+VSDK GRQRMRKLGKR F KM+NSKRSP+LF +PGCVRGKHGLGLKHS
Sbjct: 140 GYDLNDELVPWNVSDKFGRQRMRKLGKRAFPKMHNSKRSPYLFVRPGCVRGKHGLGLKHS 199

[Close]

BLAST of CsaV3_7G000220 vs. TrEMBL
Match: tr|A0A1S2YNM0|A0A1S2YNM0_CICAR (nuclear polyadenylated RNA-binding protein 3-like OS=Cicer arietinum OX=3827 GN=LOC101491164 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 81/159 (50.94%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 68  ERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLAVPISLVEDRI- 127
           + L  WEL+D  DA+ E+     E+Q  +   D  +S+D           PI  +  R+ 
Sbjct: 28  DSLLQWELVDVVDAEEEL-----EQQSIDDDGDSFLSRD-----------PIEGIRHRVL 87

Query: 128 --DCSLEDAYFLHNQAEDGFAYGYNDAXXXXXXXXXXXXXXXXDELVPWSVSDKLGRQRM 187
             D  +ED +                 XXXXXXXXXXXXXXXXDELVPW + +KLGRQRM
Sbjct: 88  HLDAHVED-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELVPWDIGNKLGRQRM 147

Query: 188 RKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 224
           RKLGKR FTKM NSKRSP+LF +PGCVRGKHGLGLKHS+
Sbjct: 148 RKLGKREFTKMNNSKRSPYLFVRPGCVRGKHGLGLKHSF 169

[Close]

BLAST of CsaV3_7G000220 vs. TrEMBL
Match: tr|A0A2P5E5F8|A0A2P5E5F8_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_003410 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 168 DELVPWSVSDKL-GRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHS 223
           DELVPWSVSDK  GRQRMRKLGKRGFTKM+NSKRSP+LF +PG VRGKHGLGLKHS
Sbjct: 131 DELVPWSVSDKFGGRQRMRKLGKRGFTKMFNSKRSPYLFVRPGVVRGKHGLGLKHS 186

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658549.1	5.7e-82	100.00	PREDICTED: uncharacterized protein LOC101212092 [Cucumis sativus] >KGN43162.1 hy...	[more]
XP_008448068.1	1.7e-73	95.27	PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]	[more]
XP_023553634.1	2.6e-58	76.97	histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969470.1	7.4e-58	78.61	uncharacterized protein LOC111468462 [Cucurbita maxima]	[more]
XP_022135642.1	3.2e-45	61.31	uncharacterized protein LOC111007551 [Momordica charantia]	[more]

BLAST of CsaV3_7G000220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34630.1	1.6e-06	71.43	unknown protein	[more]
AT5G48420.1	1.2e-04	51.22	unknown protein	[more]

BLAST of CsaV3_7G000220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G000220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4F3\|A0A0A0K4F3_CUCSA	3.7e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1	[more]
tr\|A0A1S3BJG2\|A0A1S3BJG2_CUCME	1.1e-73	95.27	uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=...	[more]
tr\|A0A2I4E7D2\|A0A2I4E7D2_9ROSI	1.6e-24	43.65	uncharacterized protein LOC108986937 OS=Juglans regia OX=51240 GN=LOC108986937 P...	[more]
tr\|A0A1S2YNM0\|A0A1S2YNM0_CICAR	1.2e-19	50.94	nuclear polyadenylated RNA-binding protein 3-like OS=Cicer arietinum OX=3827 GN=...	[more]
tr\|A0A2P5E5F8\|A0A2P5E5F8_PARAD	2.6e-19	87.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_003410 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000220.1	CsaV3_7G000220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G000220	Cucsa.377830	Cucumber (Gy14) v1	cgycucB572
CsaV3_7G000220	CmaCh11G010860	Cucurbita maxima (Rimu)	cmacucB0177
CsaV3_7G000220	CmaCh19G006850	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G000220	CmoCh19G006970	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G000220	Cp4.1LG04g01110	Cucurbita pepo (Zucchini)	cpecucB0869
CsaV3_7G000220	Cp4.1LG15g05580	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G000220	CsGy7G000230	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G000220	Carg24672	Silver-seed gourd	carcucB0201
CsaV3_7G000220	Carg19391	Silver-seed gourd	carcucB0347
CsaV3_7G000220	Cla015897	Watermelon (97103) v1	cucwmB634
CsaV3_7G000220	MELO3C013435	Melon (DHL92) v3.5.1	cucmeB549
CsaV3_7G000220	ClCG02G004690	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G000220	MELO3C013435.2	Melon (DHL92) v3.6.1	cucmedB537
CsaV3_7G000220	Cla97C02G031660	Watermelon (97103) v2	cucwmbB549
CsaV3_7G000220	Bhi05G001546	Wax gourd	cucwgoB691

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G000220	Cucumber (Chinese Long) v3	cuccucB098
CsaV3_7G000220	Cucumber (Chinese Long) v3	cuccucB101
CsaV3_7G000220	Silver-seed gourd	carcucB1026
CsaV3_7G000220	Cucumber (Gy14) v2	cgybcucB093
CsaV3_7G000220	Cucumber (Gy14) v2	cgybcucB095
CsaV3_7G000220	Cucumber (Gy14) v1	cgycucB141
CsaV3_7G000220	Cucumber (Gy14) v1	cgycucB257
CsaV3_7G000220	Cucurbita maxima (Rimu)	cmacucB0231
CsaV3_7G000220	Cucurbita maxima (Rimu)	cmacucB0689
CsaV3_7G000220	Cucurbita maxima (Rimu)	cmacucB0769
CsaV3_7G000220	Cucurbita maxima (Rimu)	cmacucB0958
CsaV3_7G000220	Cucurbita moschata (Rifu)	cmocucB0161
CsaV3_7G000220	Cucurbita moschata (Rifu)	cmocucB0219
CsaV3_7G000220	Cucurbita moschata (Rifu)	cmocucB0674
CsaV3_7G000220	Cucurbita moschata (Rifu)	cmocucB0757
CsaV3_7G000220	Cucurbita moschata (Rifu)	cmocucB0948
CsaV3_7G000220	Cucurbita pepo (Zucchini)	cpecucB0139
CsaV3_7G000220	Cucurbita pepo (Zucchini)	cpecucB0371
CsaV3_7G000220	Cucurbita pepo (Zucchini)	cpecucB0947
CsaV3_7G000220	Cucurbita pepo (Zucchini)	cpecucB1042
CsaV3_7G000220	Wild cucumber (PI 183967)	cpicucB118
CsaV3_7G000220	Wild cucumber (PI 183967)	cpicucB119
CsaV3_7G000220	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G000220	Bottle gourd (USVL1VR-Ls)	cuclsiB524
CsaV3_7G000220	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G000220	Bottle gourd (USVL1VR-Ls)	cuclsiB570
CsaV3_7G000220	Melon (DHL92) v3.5.1	cucmeB530
CsaV3_7G000220	Melon (DHL92) v3.5.1	cucmeB568
CsaV3_7G000220	Melon (DHL92) v3.6.1	cucmedB518
CsaV3_7G000220	Melon (DHL92) v3.6.1	cucmedB554
CsaV3_7G000220	Watermelon (Charleston Gray)	cucwcgB558
CsaV3_7G000220	Watermelon (Charleston Gray)	cucwcgB599
CsaV3_7G000220	Watermelon (97103) v1	cucwmB604
CsaV3_7G000220	Watermelon (97103) v1	cucwmB640
CsaV3_7G000220	Watermelon (97103) v2	cucwmbB539
CsaV3_7G000220	Watermelon (97103) v2	cucwmbB578
CsaV3_7G000220	Wax gourd	cucwgoB692
CsaV3_7G000220	Wax gourd	cucwgoB701
CsaV3_7G000220	Wax gourd	cucwgoB706