Carg19391 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19391
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nuclear polyadenylated RNA-binding protein 3-like
Location	Cucurbita_argyrosperma_scaffold_096 : 340444 .. 341037 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCATGTCTGGAGCTTCGTCATCATCTTCTTCTTCTTCCTCATCGTCTGTGGAATTCCATTTTTACGATGATTTCGAGTATGAATTTGTTGAAGATGTTGAACGCCTTTCGAACTGGGAGTTCCTCAATGCTTCTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAAAAGAGGGTAAAAACTGCTGCGTCGTTGCTCGAATTCCTGAAGATCTCCGAGAAATGATTTCTCCTGTTGTTGTGGTGCCGATTTCTCTTGCGGCGGAGGATCGGATCTTTGATCCTTTGGAAGATGTTTATTTCCTTCAGAATCACGCGGAGGACGGTTTTGCGTACGGTTACAACGATGCGGAGGAGAATGAAACTGACAAAGACGACGACGACGATGATGATGAAGATGAGTTAGATTTGGACGATGAACTCGTTCCGTGGTCTGTCAGTGACAAACTCGGACGGCAGCGGATGAGGAAATTGGGGAAAAGAGGATTTACGAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGCGTCCGCGGCAAGCACGGACTCGGCTTGAAGCATAGTTATTAG

mRNA sequence

ATGGAGGCCATGTCTGGAGCTTCGTCATCATCTTCTTCTTCTTCCTCATCGTCTGTGGAATTCCATTTTTACGATGATTTCGAGTATGAATTTGTTGAAGATGTTGAACGCCTTTCGAACTGGGAGTTCCTCAATGCTTCTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAAAAGAGGGTAAAAACTGCTGCGTCGTTGCTCGAATTCCTGAAGATCTCCGAGAAATGATTTCTCCTGTTGTTGTGGTGCCGATTTCTCTTGCGGCGGAGGATCGGATCTTTGATCCTTTGGAAGATGTTTATTTCCTTCAGAATCACGCGGAGGACGGTTTTGCGTACGGTTACAACGATGCGGAGGAGAATGAAACTGACAAAGACGACGACGACGATGATGATGAAGATGAGTTAGATTTGGACGATGAACTCGTTCCGTGGTCTGTCAGTGACAAACTCGGACGGCAGCGGATGAGGAAATTGGGGAAAAGAGGATTTACGAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGCGTCCGCGGCAAGCACGGACTCGGCTTGAAGCATAGTTATTAG

Coding sequence (CDS)

ATGGAGGCCATGTCTGGAGCTTCGTCATCATCTTCTTCTTCTTCCTCATCGTCTGTGGAATTCCATTTTTACGATGATTTCGAGTATGAATTTGTTGAAGATGTTGAACGCCTTTCGAACTGGGAGTTCCTCAATGCTTCTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAAAAGAGGGTAAAAACTGCTGCGTCGTTGCTCGAATTCCTGAAGATCTCCGAGAAATGATTTCTCCTGTTGTTGTGGTGCCGATTTCTCTTGCGGCGGAGGATCGGATCTTTGATCCTTTGGAAGATGTTTATTTCCTTCAGAATCACGCGGAGGACGGTTTTGCGTACGGTTACAACGATGCGGAGGAGAATGAAACTGACAAAGACGACGACGACGATGATGATGAAGATGAGTTAGATTTGGACGATGAACTCGTTCCGTGGTCTGTCAGTGACAAACTCGGACGGCAGCGGATGAGGAAATTGGGGAAAAGAGGATTTACGAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGCGTCCGCGGCAAGCACGGACTCGGCTTGAAGCATAGTTATTAG

Protein sequence

MEAMSGASSSSSSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVVPISLAAEDRIFDPLEDVYFLQNHAEDGFAYGYNDAEENETDKDDDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

Homology

[Close]

BLAST of Carg19391 vs. NCBI nr
Match: XP_022969470.1 (uncharacterized protein LOC111468462 [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 5.2e-71
Identity = 170/173 (98.27%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDL EMISPVVVV
Sbjct: 25  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLLEMISPVVVV 84

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFA-XXXXXXXXXXXXXXXXXXXXXXXXXXXDEL 145
           PISL AEDRIFDPLEDVYFLQNHAEDGFA XXXXXXXXXXXXXXXXXXXXXXXXXXXDEL
Sbjct: 85  PISL-AEDRIFDPLEDVYFLQNHAEDGFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXDEL 144

Query: 146 VPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           VPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 145 VPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 196

[Close]

BLAST of Carg19391 vs. NCBI nr
Match: XP_023553634.1 (histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.9 bits (707), Expect = 5.2e-71
Identity = 170/176 (96.59%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLRE+ISPVVVV
Sbjct: 22  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREIISPVVVV 81

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFA----XXXXXXXXXXXXXXXXXXXXXXXXXXX 145
           PISL AEDRIFDPLEDVYFLQNHAEDGFA    XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 82  PISL-AEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 141

Query: 146 DELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           DELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 142 DELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 196

[Close]

BLAST of Carg19391 vs. NCBI nr
Match: XP_011658549.1 (PREDICTED: uncharacterized protein LOC101212092 [Cucumis sativus] >KGN43162.1 hypothetical protein Csa_7G004150 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 3.6e-56
Identity = 135/172 (78.49%), Postives = 143/172 (83.14%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DLREMISPV+ V
Sbjct: 22  DFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLAV 81

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXDELV 145
           PISL  EDRI   LED YFL N AEDGFA           XXXXXXXXXXXXXXXXDELV
Sbjct: 82  PISL-VEDRIDCSLEDAYFLHNQAEDGFA-----YGYNDAXXXXXXXXXXXXXXXXDELV 141

Query: 146 PWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           PWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 142 PWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 187

[Close]

BLAST of Carg19391 vs. NCBI nr
Match: XP_008448068.1 (PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 131/172 (76.16%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G+N  V   + +DLREMISPV+ V
Sbjct: 28  DFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGENYSVDDNVSQDLREMISPVLAV 87

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXDELV 145
           PISL  EDRI   LED  FL N AEDGFA            XXXXXXXXXXXXXXX ELV
Sbjct: 88  PISL-VEDRIDGSLEDACFLHNQAEDGFA----YGYDDAEEXXXXXXXXXXXXXXXXELV 147

Query: 146 PWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           PWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 148 PWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 194

[Close]

BLAST of Carg19391 vs. NCBI nr
Match: XP_022135642.1 (uncharacterized protein LOC111007551 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 109/169 (64.50%), Postives = 119/169 (70.41%), Query Frame = 0


Query: 30  EFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVVPISL 89
           EFV++VERLSNWEFL+ASDA  EMDG+ G+ EG +  V  R+P DLRE +SPV  VPISL
Sbjct: 27  EFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISL 86

Query: 90  AAEDRIFDPLEDVYFLQNHAEDGFA-XXXXXXXXXXXXXXXXXXXXXXXXXXXDELVPWS 149
            AEDRI D +  VY LQ+  EDGFA                            DELVPWS
Sbjct: 87  -AEDRIDDRV-GVYLLQD-LEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWS 146

Query: 150 VSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           VS KLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 147 VSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 189

[Close]

BLAST of Carg19391 vs. TAIR10
Match: AT4G34630.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 160 KLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLK 195
           KLGKR   ++Y SK SPFL  KPG VRGKHGLG+K
Sbjct: 164 KLGKRAIAKVYASKISPFL--KPGIVRGKHGLGMK 196

[Close]

BLAST of Carg19391 vs. TAIR10
Match: AT5G48420.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.0e-04
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 156 QRMRKLGKRGFTRMYNSKRSPFLFT--KPGCVRGKHGLGLK 195
           QR+RK GKR F +    K+  + ++  KPGCV GKHGL +K
Sbjct: 99  QRIRKTGKRTFWKNVTLKKKKYSYSQLKPGCVHGKHGLDIK 139

[Close]

BLAST of Carg19391 vs. TrEMBL
Match: tr|A0A0A0K4F3|A0A0A0K4F3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.4e-56
Identity = 135/172 (78.49%), Postives = 143/172 (83.14%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DLREMISPV+ V
Sbjct: 22  DFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGGNCSVDDNVSQDLREMISPVLAV 81

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXDELV 145
           PISL  EDRI   LED YFL N AEDGFA           XXXXXXXXXXXXXXXXDELV
Sbjct: 82  PISL-VEDRIDCSLEDAYFLHNQAEDGFA-----YGYNDAXXXXXXXXXXXXXXXXDELV 141

Query: 146 PWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           PWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 142 PWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 187

[Close]

BLAST of Carg19391 vs. TrEMBL
Match: tr|A0A1S3BJG2|A0A1S3BJG2_CUCME (uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 131/172 (76.16%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIPEDLREMISPVVVV 85
           DFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G+N  V   + +DLREMISPV+ V
Sbjct: 28  DFEYEFVEDIERLSNWELLDAFDADSEMGGNGGEEQGENYSVDDNVSQDLREMISPVLAV 87

Query: 86  PISLAAEDRIFDPLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXDELV 145
           PISL  EDRI   LED  FL N AEDGFA            XXXXXXXXXXXXXXX ELV
Sbjct: 88  PISL-VEDRIDGSLEDACFLHNQAEDGFA----YGYDDAEEXXXXXXXXXXXXXXXXELV 147

Query: 146 PWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           PWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Sbjct: 148 PWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 194

[Close]

BLAST of Carg19391 vs. TrEMBL
Match: tr|A0A2I4E7D2|A0A2I4E7D2_9ROSI (uncharacterized protein LOC108986937 OS=Juglans regia OX=51240 GN=LOC108986937 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 78/188 (41.49%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 26  DFEYEFVEDVERLSNWEFLNASDADSEMDGNGGE-KEGKNCCVVARIPEDLREMISPVVV 85
           D ++  VE+ + LS+WEF+NASDADSE    G E  E K  C+   I     ++ +P+ +
Sbjct: 21  DLDFVQVEE-QGLSHWEFVNASDADSERGEQGDEIDEDKEDCIGNGIGSLDSDISTPICL 80

Query: 86  VPISLAAEDRIFDPLEDVYFLQNHAED------------GFA---XXXXXXXXXXXXXXX 145
               +  E+R      DV     H  D            GFA                  
Sbjct: 81  KNSQM--ENR------DVDHQNPHHHDVDAGVKYEAGYCGFARGYEDGGRGEEQFDNEGD 140

Query: 146 XXXXXXXXXXXXDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKH 198
                       DELVPW+VSDK GRQRMRKLGKR F +M+NSKRSP+LF +PGCVRGKH
Sbjct: 141 EDDDANDGYDLNDELVPWNVSDKFGRQRMRKLGKRAFPKMHNSKRSPYLFVRPGCVRGKH 199

[Close]

BLAST of Carg19391 vs. TrEMBL
Match: tr|A0A2I4G8W6|A0A2I4G8W6_9ROSI (nuclear polyadenylated RNA-binding protein 3-like OS=Juglans regia OX=51240 GN=LOC109005739 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.3e-19
Identity = 96/181 (53.04%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 28  EYEFVEDV-------ERLSNWEFLNASDADSEMD-GNGGEKEGKNCCVVARIPEDLREMI 87
           EY  +ED+       + LS+WEF+NASDA+SE +         K   +V  I     E+ 
Sbjct: 16  EYLLMEDLGFIQVEEQGLSHWEFVNASDAESEREXXXXXXXXXKENHIVDGIDSLGSEIS 75

Query: 88  SPVV--VVPISLAAEDRIFD-PLEDVYFLQNHAEDGFAXXXXXXXXXXXXXXXXXXXXXX 147
           +P+   V  I    +D   D   +  Y+      DG  XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 76  TPICLRVEQIETHVDDVDVDRKCDGGYYSFGRGYDGXXXXXXXXXXXXXXXXXXXXXXXX 135

Query: 148 XXXXXDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHS 198
           XXXXX  LVPW+VS+K+GRQRMRKLGKR F +MY+SKRSP+LF +PGCVRGK+GLGLKH+
Sbjct: 136 XXXXXXXLVPWNVSNKIGRQRMRKLGKREFPKMYSSKRSPYLFVRPGCVRGKYGLGLKHN 195

[Close]

BLAST of Carg19391 vs. TrEMBL
Match: tr|A0A1S2YNM0|A0A1S2YNM0_CICAR (nuclear polyadenylated RNA-binding protein 3-like OS=Cicer arietinum OX=3827 GN=LOC101491164 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 142 DELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY 198
           DELVPW + +KLGRQRMRKLGKR FT+M NSKRSP+LF +PGCVRGKHGLGLKHS+
Sbjct: 114 DELVPWDIGNKLGRQRMRKLGKREFTKMNNSKRSPYLFVRPGCVRGKHGLGLKHSF 169

The following BLAST results are available for this feature:

BLAST of Carg19391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969470.1	5.2e-71	98.27	uncharacterized protein LOC111468462 [Cucurbita maxima]	[more]
XP_023553634.1	5.2e-71	96.59	histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]	[more]
XP_011658549.1	3.6e-56	78.49	PREDICTED: uncharacterized protein LOC101212092 [Cucumis sativus] >KGN43162.1 hy...	[more]
XP_008448068.1	1.3e-53	76.16	PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]	[more]
XP_022135642.1	1.6e-43	64.50	uncharacterized protein LOC111007551 [Momordica charantia]	[more]

BLAST of Carg19391 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34630.1	4.1e-06	68.57	unknown protein	[more]
AT5G48420.1	3.0e-04	48.78	unknown protein	[more]

BLAST of Carg19391 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19391 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4F3\|A0A0A0K4F3_CUCSA	2.4e-56	78.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004150 PE=4 SV=1	[more]
tr\|A0A1S3BJG2\|A0A1S3BJG2_CUCME	8.5e-54	76.16	uncharacterized protein LOC103490356 OS=Cucumis melo OX=3656 GN=LOC103490356 PE=...	[more]
tr\|A0A2I4E7D2\|A0A2I4E7D2_9ROSI	2.9e-22	41.49	uncharacterized protein LOC108986937 OS=Juglans regia OX=51240 GN=LOC108986937 P...	[more]
tr\|A0A2I4G8W6\|A0A2I4G8W6_9ROSI	2.3e-19	53.04	nuclear polyadenylated RNA-binding protein 3-like OS=Juglans regia OX=51240 GN=L...	[more]
tr\|A0A1S2YNM0\|A0A1S2YNM0_CICAR	4.0e-19	80.36	nuclear polyadenylated RNA-binding protein 3-like OS=Cicer arietinum OX=3827 GN=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19391-RA	Carg19391-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19391	Cla015897	Watermelon (97103) v1	carwmB0305
Carg19391	Csa7G004150	Cucumber (Chinese Long) v2	carcuB0342
Carg19391	MELO3C013435	Melon (DHL92) v3.5.1	carmeB0321
Carg19391	ClCG02G004690	Watermelon (Charleston Gray)	carwcgB0308
Carg19391	Cucsa.377830	Cucumber (Gy14) v1	carcgyB0372
Carg19391	CmaCh19G006850	Cucurbita maxima (Rimu)	carcmaB0440
Carg19391	CmaCh11G010860	Cucurbita maxima (Rimu)	carcmaB0438
Carg19391	CmoCh19G006970	Cucurbita moschata (Rifu)	carcmoB0433
Carg19391	Cp4.1LG15g05580	Cucurbita pepo (Zucchini)	carcpeB0436
Carg19391	Cp4.1LG04g01110	Cucurbita pepo (Zucchini)	carcpeB0438
Carg19391	CsGy7G000230	Cucumber (Gy14) v2	carcgybB0326
Carg19391	MELO3C013435.2	Melon (DHL92) v3.6.1	carmedB0330
Carg19391	CsaV3_7G000220	Cucumber (Chinese Long) v3	carcucB0347
Carg19391	Cla97C02G031660	Watermelon (97103) v2	carwmbB0324
Carg19391	Bhi05G001546	Wax gourd	carwgoB0399

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19391	Carg24672	Silver-seed gourd	carcarB212

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19391	Cucumber (Gy14) v2	carcgybB0325
Carg19391	Cucumber (Gy14) v1	carcgyB0368
Carg19391	Cucurbita maxima (Rimu)	carcmaB0441
Carg19391	Cucurbita maxima (Rimu)	carcmaB0442
Carg19391	Cucurbita maxima (Rimu)	carcmaB0443
Carg19391	Cucurbita moschata (Rifu)	carcmoB0431
Carg19391	Cucurbita moschata (Rifu)	carcmoB0434
Carg19391	Cucurbita moschata (Rifu)	carcmoB0436
Carg19391	Cucurbita pepo (Zucchini)	carcpeB0437
Carg19391	Cucurbita pepo (Zucchini)	carcpeB0440
Carg19391	Wild cucumber (PI 183967)	carcpiB0347
Carg19391	Wild cucumber (PI 183967)	carcpiB0348
Carg19391	Cucumber (Chinese Long) v2	carcuB0341
Carg19391	Cucumber (Chinese Long) v3	carcucB0346
Carg19391	Bottle gourd (USVL1VR-Ls)	carlsiB288
Carg19391	Bottle gourd (USVL1VR-Ls)	carlsiB290
Carg19391	Melon (DHL92) v3.5.1	carmeB0320
Carg19391	Melon (DHL92) v3.6.1	carmedB0329
Carg19391	Watermelon (Charleston Gray)	carwcgB0307
Carg19391	Watermelon (97103) v1	carwmB0307
Carg19391	Watermelon (97103) v2	carwmbB0323
Carg19391	Wax gourd	carwgoB0398
Carg19391	Wax gourd	carwgoB0401