CsaV3_6G049780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G049780
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 29038364 .. 29038522 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

mRNA sequence

ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

Coding sequence (CDS)

ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

Protein sequence

MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT
Homology
[Close]
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KGN49191.1 (hypothetical protein Csa_6G516990 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 9.4e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 52

[Close]
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: XP_022977341.1 (uncharacterized protein LOC111477692 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
           M  SR+  I+ A YSPR+S RP PKRGQVKLGIMVGLAH+VASIFSPTTR
Sbjct: 56  MGGSRSDDISGATYSPRSSGRPIPKRGQVKLGIMVGLAHSVASIFSPTTR 105

[Close]
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KJB53424.1 (hypothetical protein B456_009G172100 [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRR 52
          MA +R   I    YSPR + RP P+RGQVK+ I++G+AH+ ASIFS ++RR
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KCW74651.1 (hypothetical protein EUGRSUZ_E03373 [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          MA SR+  ++    S R S+RP PKRGQVK+GI+VGLAH+VASIFS + R
Sbjct: 17 MAISRSGEMSGGGVSGRISSRPIPKRGQVKVGIVVGLAHSVASIFSQSLR 66

[Close]
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KCW74649.1 (hypothetical protein EUGRSUZ_E03371, partial [Eucalyptus grandis])

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          MA SR+  +   + S R S+RP PKRGQVK+GI+VGLAH+VASIFS + R
Sbjct: 41 MAISRSGEMRGGSVSGRISSRPIPKRGQVKVGIVVGLAHSVASIFSLSLR 90

[Close]
BLAST of CsaV3_6G049780 vs. TrEMBL
Match: tr|A0A0A0KN78|A0A0A0KN78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 52

[Close]
BLAST of CsaV3_6G049780 vs. TrEMBL
Match: tr|A0A0D2T9Z2|A0A0D2T9Z2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G172100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRR 52
          MA +R   I    YSPR + RP P+RGQVK+ I++G+AH+ ASIFS ++RR
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]
BLAST of CsaV3_6G049780 vs. TrEMBL
Match: tr|A0A059C8Y5|A0A059C8Y5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03373 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          MA SR+  ++    S R S+RP PKRGQVK+GI+VGLAH+VASIFS + R
Sbjct: 17 MAISRSGEMSGGGVSGRISSRPIPKRGQVKVGIVVGLAHSVASIFSQSLR 66

[Close]
BLAST of CsaV3_6G049780 vs. TrEMBL
Match: tr|F6GYY0|F6GYY0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0301g00060 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MA  R   I    +S R S RP PKRGQVK+GI+VGLAH+VASIFS   RR+
Sbjct: 1  MAGGRRAMINGGNFSQRFSGRPIPKRGQVKVGIVVGLAHSVASIFSLGGRRS 52

[Close]
BLAST of CsaV3_6G049780 vs. TrEMBL
Match: tr|A0A059C8T5|A0A059C8T5_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03371 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          MA SR+  +   + S R S+RP PKRGQVK+GI+VGLAH+VASIFS + R
Sbjct: 41 MAISRSGEMRGGSVSGRISSRPIPKRGQVKVGIVVGLAHSVASIFSLSLR 90

The following BLAST results are available for this feature:
BLAST of CsaV3_6G049780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49191.19.4e-20100.00hypothetical protein Csa_6G516990 [Cucumis sativus][more]
XP_022977341.11.2e-1176.00uncharacterized protein LOC111477692 [Cucurbita maxima][more]
KJB53424.12.0e-0652.94hypothetical protein B456_009G172100 [Gossypium raimondii][more]
KCW74651.13.5e-0660.00hypothetical protein EUGRSUZ_E03373 [Eucalyptus grandis][more]
KCW74649.17.8e-0660.00hypothetical protein EUGRSUZ_E03371, partial [Eucalyptus grandis][more]
BLAST of CsaV3_6G049780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G049780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G049780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KN78|A0A0A0KN78_CUCSA6.2e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1[more]
tr|A0A0D2T9Z2|A0A0D2T9Z2_GOSRA1.4e-0652.94Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G172100 PE=4 ... [more]
tr|A0A059C8Y5|A0A059C8Y5_EUCGR2.3e-0660.00Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03373 PE=4 SV... [more]
tr|F6GYY0|F6GYY0_VITVI3.0e-0659.62Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0301g00060 PE=4 SV=... [more]
tr|A0A059C8T5|A0A059C8T5_EUCGR5.1e-0660.00Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G049780.1CsaV3_6G049780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615FAMILY NOT NAMEDcoord: 1..52

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G049780CSPI06G34270Wild cucumber (PI 183967)cpicucB363
CsaV3_6G049780Cucsa.045910Cucumber (Gy14) v1cgycucB028
CsaV3_6G049780CmaCh03G004810Cucurbita maxima (Rimu)cmacucB0808
CsaV3_6G049780Cp4.1LG19g07510Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G049780Cla001352Watermelon (97103) v1cucwmB526
CsaV3_6G049780MELO3C007318Melon (DHL92) v3.5.1cucmeB520
CsaV3_6G049780MELO3C007318.2Melon (DHL92) v3.6.1cucmedB508
CsaV3_6G049780Bhi03G000366Wax gourdcucwgoB648
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0162
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0265
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0506
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0629
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0759
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G049780Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0147
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0254
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0494
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0614
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0746
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0792
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G049780Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0054
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0097
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0650
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0855
CsaV3_6G049780Cucurbita pepo (Zucchini)cpecucB0927
CsaV3_6G049780Wild cucumber (PI 183967)cpicucB051
CsaV3_6G049780Wild cucumber (PI 183967)cpicucB409
CsaV3_6G049780Bottle gourd (USVL1VR-Ls)cuclsiB453
CsaV3_6G049780Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G049780Bottle gourd (USVL1VR-Ls)cuclsiB465
CsaV3_6G049780Melon (DHL92) v3.5.1cucmeB464
CsaV3_6G049780Melon (DHL92) v3.5.1cucmeB473
CsaV3_6G049780Melon (DHL92) v3.6.1cucmedB455
CsaV3_6G049780Melon (DHL92) v3.6.1cucmedB463
CsaV3_6G049780Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G049780Watermelon (Charleston Gray)cucwcgB476
CsaV3_6G049780Watermelon (Charleston Gray)cucwcgB480
CsaV3_6G049780Watermelon (97103) v1cucwmB503
CsaV3_6G049780Watermelon (97103) v1cucwmB544
CsaV3_6G049780Watermelon (97103) v2cucwmbB430
CsaV3_6G049780Watermelon (97103) v2cucwmbB467
CsaV3_6G049780Wax gourdcucwgoB656
CsaV3_6G049780Cucumber (Chinese Long) v3cuccucB044
CsaV3_6G049780Cucumber (Chinese Long) v3cuccucB213
CsaV3_6G049780Silver-seed gourdcarcucB0030
CsaV3_6G049780Silver-seed gourdcarcucB0174
CsaV3_6G049780Silver-seed gourdcarcucB0674
CsaV3_6G049780Silver-seed gourdcarcucB0914
CsaV3_6G049780Silver-seed gourdcarcucB0972
CsaV3_6G049780Silver-seed gourdcarcucB0973
CsaV3_6G049780Silver-seed gourdcarcucB0992
CsaV3_6G049780Cucumber (Gy14) v2cgybcucB045
CsaV3_6G049780Cucumber (Gy14) v2cgybcucB298
CsaV3_6G049780Cucumber (Gy14) v1cgycucB176
CsaV3_6G049780Cucumber (Gy14) v1cgycucB225