CsaV3_6G046020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G046020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 27239796 .. 27240868 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTCAGTCGGAGGTTCAAATGGCATTATTGTTCTCGACTGTTCATATCTTGATTTTTCTTTATGGCATTTCACTGTTCCTATTACGTATCAAACAATTTTGTGGTACTTAGCTACGTCTATTGATCATTCGAGGTAAGAATATCCAATTTTTAGAGGGTTCGGATTGAAATGGTCACAGCTTCACAGGTCGGAGTTTCATGTTCCTTTCTTCAATTTCATAGAAACTTATCCAATTTCGACCATTCTGTTTCATAAAAGCAGCTTCAGATTTCATTACTCCATCTACTAATTCAAGTAGGGCAGTCATAATTTGGTAACATAAAAAGCAACCTTAATTATTGTCAACTACTTTCAATTTTCATAATTGTACATCTCCCTCTTCGCCAAAGACTAGCCATTATACAGATGTTTCTGATGAACTTTTCATTCACCTATCCCTCTTTCTTGCAGTGGTTCATCTATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGGTCGGTGCTTTTTCTTTTTTCTTTTCCTCTTTCCTCTTCTCATATCTTAAATATGTTTTCTTGGATCAGATCTGATTGCAGCAAACTTTGAGAAATCATCAATTTTCTCTGTTTTCCTGTTGCCTGTTTGGGTGTGATTTTGTTGGCATTGTTCTTGCAAACTGTATTTGACCTTTGAACAGTCAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATGTAAGAAGAAGGTATCATTACTTTAGTAATACTTGTAACATCATAGGATACTTCTTCAAGTCCTAAAGTTTGAATATTTCAAATGTGAAAATAGTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGA

mRNA sequence

ATGTATTTCAGTCGGAGTGGTTCATCTATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGA

Coding sequence (CDS)

ATGTATTTCAGTCGGAGTGGTTCATCTATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGA

Protein sequence

MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Homology
[Close]
BLAST of CsaV3_6G046020 vs. NCBI nr
Match: KGN48808.1 (hypothetical protein Csa_6G501970 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH 60
           MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH
Sbjct: 1   MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH 60

Query: 61  IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 118
           IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Sbjct: 61  IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 117

[Close]
BLAST of CsaV3_6G046020 vs. TrEMBL
Match: tr|A0A0A0KGX6|A0A0A0KGX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501970 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH 60
           MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH
Sbjct: 1   MYFSRSGSSMIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWH 60

Query: 61  IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 118
           IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Sbjct: 61  IMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 117

The following BLAST results are available for this feature:
BLAST of CsaV3_6G046020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48808.13.7e-56100.00hypothetical protein Csa_6G501970 [Cucumis sativus][more]
BLAST of CsaV3_6G046020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G046020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G046020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGX6|A0A0A0KGX6_CUCSA2.4e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G046020.1CsaV3_6G046020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G046020CSPI06G30780Wild cucumber (PI 183967)cpicucB363
CsaV3_6G046020CsGy6G030320Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G046020Wax gourdcucwgoB641
CsaV3_6G046020Silver-seed gourdcarcucB0442
CsaV3_6G046020Silver-seed gourdcarcucB0797
CsaV3_6G046020Cucumber (Gy14) v1cgycucB126
CsaV3_6G046020Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G046020Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G046020Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G046020Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G046020Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G046020Cucurbita pepo (Zucchini)cpecucB0580
CsaV3_6G046020Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G046020Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G046020Bottle gourd (USVL1VR-Ls)cuclsiB499
CsaV3_6G046020Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G046020Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G046020Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G046020Watermelon (97103) v1cucwmB526
CsaV3_6G046020Watermelon (97103) v2cucwmbB430