CsGy6G030320 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G030320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 28544269 .. 28546291 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTGCAATTACCCAGTTAGCACACCATGGAATGCTGTTTGTTCCCATCGGCTACACTTTTGGTGCTGGTATGTTTACGATAGACACAATACGAGGGGGGTCTCCTTATGGTGCAGGAGCTTTTGCTGGTGATGGCTCGAGACAGCCAAGTGAAACAGAGTTGGCGCTTGCAGAGCATCAGGGCAAATACATGGCTGCTACAGTCAAAAAACTTTTTCCGGCTTGATGAAATGTCTTGTTTCTGTTTTTTTTTCCTTTAAAAAAAAATGAATTCATTCAAATTGCTGCGTCCCTCATCTATGATTGTTTCTTCCTTGTCCTGTCTCCATTCAAAGTACAGTTGTCTTGTGTTTGTTTGGTCATTCTTTTTTACGTTACGTGATTGTGCAAAATATACAATGCCCTGTGTGGGATTGTTTTTCTGTCGTCTCTCTGTACATGGTTTATGATTCATGGTTATGGTGTTTGTCAAATAATGTTGTGAAATGTGGAAATTTTTCTTACTAAACCTTCTTCTTTTGCTGGGAATGTATTTCAGTCGGAGGTTCAAATGGCATTATTGTTCTCGACTGTTCATATCTTGATTTTTCTTTATGGCATTTCACTGTTCCTATTACGTATCAAACAATTTTGTGGTACTTAGCTACGTCTATTGATCATTCGAGGTAAGAATATCCAATTTTTAGAGGGTTCGGATTGAAATGGTCACAGCTTCACAGGTCGGAGTTTCATGTTCCTTTCTTCAATTTCATAGAAACTTATCCAATTTCGACCATTCTGTTTCATAAAAGCAGCTTCAGATTTCATTACTCCATCTACTAATTCAAGTAGGGCAGTCATAATTTGGTAACATAAAAAGCAACCTTAATTATTGTCAACTACTTTCAATTTTCATAATTGTACATCTCCCTCTTCGCCAAAGACTAGCCATTATACAGATGTTTCTGATGAACTTTTCATTCACCTATCCCTCTTTCTTGCAGTGGTTCATCTATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGGTCGGTGCTTTTTCTTTTTTCTTTTCCTCTTTCCTCTTCTCATATCTTAAATATGTTTTCTTGGATCAGATCTGATTGCAGCAAACTTTGAGAAATCATCAATTTTCTCTGTTTTCCTGTTGCCTGTTTGGGTGTGATTTTGTTGGCATTGTTCTTGCAAACTGTATTTGACCTTTGAACAGTCAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATGTAAGAAGAAGGTATCATTACTTTAGTAATACTTGTAACATCATAGGATACTTCTTCAAGTCCTAAAGTTTGAATATTTCAAATGTGAAAATAGTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGATTCATGAATCCGAGGTTGGCGCTTAGGAGGAAGATAACCACCACAGCCCGTGTTGGATGAGGTATTGAAAGCTGGAAGCTCATGGTTTGACTACTAGCCAAAAGGTAGATGTTGGTGAGATGGGATGTCGTTCATCGATCGACTCGAGATGGATTATTTTCTGATGTTGCCCGACTACATAGAGGGTTTTTGCACGTCGCTGGATCATAAGTAATAGAGTCATGTTTCATCATGTTGATGATATGATTGTAGTTCCTATTTTCTTCAAGTTATAGATTTTTGTTTAGAGTGATTTAATTTTTTTGTTTGGTTGAACAAGCTTGTTAAGACGATCACTTGATTGATTGCATCTATTTGGCTTAATCCAAGGTGATTAGTTTTGTGAAACATGTTACTAGAAATCAATGCTGAACAATTAAA

mRNA sequence

ATGGACTGCAATTACCCAGTTAGCACACCATGGAATGCTGTTTGTTCCCATCGGCTACACTTTTGGTGCTGGTATGTTTACGATAGACACAATACGAGGGGGGTCTCCTTATGGTGCAGGAGCTTTTGCTGGTGATGGCTCGAGACAGCCAAGTGAAACAGAGTTGGCGCTTGCAGAGCATCAGGGCAAATACATGGCTGCTACAGTCAAAAAACTTTTTCCGGCTTGATGAAATGTCTTGTTTCTGTTTTTTTTTCCTTTAAAAAAAAATGAATTCATTCAAATTGCTGCGTCCCTCATCTATGATTGTTTCTTCCTTGTCCTGTCTCCATTCAAAGTACAGTTGTCTTGTGTTTGTTTGGTCATTCTTTTTTACGTTACGTGATTGTGCAAAATATACAATGCCCTGTGTGGGATTGTTTTTCTGTCGTCTCTCTGTACATGGTTTATGATTCATGGTTATGGTGTTTGTCAAATAATGTTGTGAAATGTGGAAATTTTTCTTACTAAACCTTCTTCTTTTGCTGGGAATGTATTTCAGTCGGAGGTTCAAATGGCATTATTGTTCTCGACTGTTCATATCTTGATTTTTCTTTATGGCATTTCACTGTTCCTATTACGTATCAAACAATTTTGTGGTACTTAGCTACGTCTATTGATCATTCGAGGTAAGAATATCCAATTTTTAGAGGGTTCGGATTGAAATGGTCACAGCTTCACAGGTCGGAGTTTCATGTTCCTTTCTTCAATTTCATAGAAACTTATCCAATTTCGACCATTCTGTTTCATAAAAGCAGCTTCAGATTTCATTACTCCATCTACTAATTCAAGTAGGGCAGTCATAATTTGGTAACATAAAAAGCAACCTTAATTATTGTCAACTACTTTCAATTTTCATAATTGTACATCTCCCTCTTCGCCAAAGACTAGCCATTATACAGATGTTTCTGATGAACTTTTCATTCACCTATCCCTCTTTCTTGCAGTGGTTCATCTATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGATTCATGAATCCGAGGTTGGCGCTTAGGAGGAAGATAACCACCACAGCCCGTGTTGGATGAGGTATTGAAAGCTGGAAGCTCATGGTTTGACTACTAGCCAAAAGGTAGATGTTGGTGAGATGGGATGTCGTTCATCGATCGACTCGAGATGGATTATTTTCTGATGTTGCCCGACTACATAGAGGGTTTTTGCACGTCGCTGGATCATAAGTAATAGAGTCATGTTTCATCATGTTGATGATATGATTGTAGTTCCTATTTTCTTCAAGTTATAGATTTTTGTTTAGAGTGATTTAATTTTTTTGTTTGGTTGAACAAGCTTGTTAAGACGATCACTTGATTGATTGCATCTATTTGGCTTAATCCAAGGTGATTAGTTTTGTGAAACATGTTACTAGAAATCAATGCTGAACAATTAAA

Coding sequence (CDS)

ATGATCCAAACATCAACTGTAGCAGCTTCAACATCCTCTAATTTTCCATCTGTCCCACATTTGAGTGAATCTGATGAAACCGTGTTATACAATTATACTGCAAATTATTGTTACGTGAATGGACTCCAACGATCTCGGAGATGCAGCTGGCACATTATGACCATGACATCAACAACCAGGCTGAGCACGACTAGGACATCCAAAAATAGCAAGAGGAACAGGGCTAGTAATATTGATGCTGCTCTAAACCGTATTGTCAATGCCATGGAAAAGATGCCAAAAGGCAAAAACAGTGTTTGGCTACTGAATAGCTATAGTAAAAACTGA

Protein sequence

MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTRLSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Homology
[Close]
BLAST of CsGy6G030320 vs. NCBI nr
Match: KGN48808.1 (hypothetical protein Csa_6G501970 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 3.3e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR 60
           MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR
Sbjct: 10  MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR 69

Query: 61  LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 109
           LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Sbjct: 70  LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 117

[Close]
BLAST of CsGy6G030320 vs. TrEMBL
Match: tr|A0A0A0KGX6|A0A0A0KGX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501970 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR 60
           MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR
Sbjct: 10  MIQTSTVAASTSSNFPSVPHLSESDETVLYNYTANYCYVNGLQRSRRCSWHIMTMTSTTR 69

Query: 61  LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 109
           LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN
Sbjct: 70  LSTTRTSKNSKRNRASNIDAALNRIVNAMEKMPKGKNSVWLLNSYSKN 117

The following BLAST results are available for this feature:
BLAST of CsGy6G030320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48808.13.3e-51100.00hypothetical protein Csa_6G501970 [Cucumis sativus][more]
BLAST of CsGy6G030320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G030320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G030320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGX6|A0A0A0KGX6_CUCSA2.2e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G030320.1CsGy6G030320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G030320Csa6G501970Cucumber (Chinese Long) v2cgybcuB281
CsGy6G030320CSPI06G30780Wild cucumber (PI 183967)cgybcpiB287
CsGy6G030320CsaV3_6G046020Cucumber (Chinese Long) v3cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G030320Wax gourdcgybwgoB592
CsGy6G030320Cucumber (Gy14) v2cgybcgybB060
CsGy6G030320Cucurbita maxima (Rimu)cgybcmaB831
CsGy6G030320Cucurbita maxima (Rimu)cgybcmaB861
CsGy6G030320Cucurbita moschata (Rifu)cgybcmoB703
CsGy6G030320Cucurbita moschata (Rifu)cgybcmoB811
CsGy6G030320Cucurbita moschata (Rifu)cgybcmoB843
CsGy6G030320Cucurbita pepo (Zucchini)cgybcpeB710
CsGy6G030320Cucurbita pepo (Zucchini)cgybcpeB807
CsGy6G030320Cucurbita pepo (Zucchini)cgybcpeB810
CsGy6G030320Cucurbita pepo (Zucchini)cgybcpeB881
CsGy6G030320Cucumber (Chinese Long) v2cgybcuB247
CsGy6G030320Bottle gourd (USVL1VR-Ls)cgyblsiB398
CsGy6G030320Bottle gourd (USVL1VR-Ls)cgyblsiB435
CsGy6G030320Bottle gourd (USVL1VR-Ls)cgyblsiB450
CsGy6G030320Melon (DHL92) v3.5.1cgybmeB420
CsGy6G030320Melon (DHL92) v3.5.1cgybmeB444
CsGy6G030320Melon (DHL92) v3.6.1cgybmedB417
CsGy6G030320Melon (DHL92) v3.6.1cgybmedB440
CsGy6G030320Watermelon (Charleston Gray)cgybwcgB399
CsGy6G030320Watermelon (Charleston Gray)cgybwcgB471
CsGy6G030320Watermelon (97103) v1cgybwmB445
CsGy6G030320Watermelon (97103) v1cgybwmB468
CsGy6G030320Wild cucumber (PI 183967)cgybcpiB254
CsGy6G030320Silver-seed gourdcarcgybB0114
CsGy6G030320Silver-seed gourdcarcgybB0418
CsGy6G030320Silver-seed gourdcarcgybB0753
CsGy6G030320Silver-seed gourdcarcgybB0969
CsGy6G030320Cucumber (Chinese Long) v3cgybcucB258
CsGy6G030320Watermelon (97103) v2cgybwmbB394
CsGy6G030320Watermelon (97103) v2cgybwmbB479