CsaV3_6G045160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G045160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 26735893 .. 26737862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCGGTCAAATCCCTATAAATATGGAGTATCTCAAACAATTCTAACAACCTATATCAAAATCTAATATAGATAAACCCACCACCCCAAATCTTCTAATTTTGGATTTTGAATAAAGCAAAAAATATATCAAACCTAACTTTAGTTAGTTCTTCATTATCCCCAATTATTATTAACACTAAAATAAAACAAAACTATAAAATATGAATTTCTAAAAAAGGAGAAATCAATTGGAGCTTTCTTTCGGCTCTTCTTCGAATCAATTTCTCCATGCCAAACCCCAATTGCACAAAGTATCATTCTCAATCGATTTAATTAGTTGAATTTGCTATACACATGCAGACCTAACTCTATTTGTTTATACTGACAAATCGATCCTTGATGTGGTTTAAAGAAAATACCCTAATTATTCTTCTATTGAAGACTATCTTGCTCTCTTCTATTGTAAGTTTTTAATTTCAACTTATAGAATAAAATTATGAAGAAGGAATCGACAGAAAAGGTATCTCATAAATCACTTCTCTTTACAACCACACTGAACAAAAACACTAAGATTTCAAACATATAAAAAGAAAAGAAAAAGCTCTTATTCATCACTAATCCGATCTACAAAGAATTCAAATATAATTAACAGAAGAACAATGAATACTAAAAAAGTAACCAAAAACTATCCAAATTACAAACCACAACTCACTAAAATAATAATAATAACAATGAAATTATGTGAATGGCAGTAGTGTGGAAAAGAGATTTAAAGAAGAATAAAAAAGCAAAAGAATTCCATCAGCCATCACTCCAATTCACCTTCAAATTTAGATCTCTAAATTGACCCAACGCATCAACGTCTACGATAAAATCACTCCAAACAGAGTACCAGCCAAAGCGATCCCCAACGTCGCTGCTCCGCCGATGTGCGACCCCGCTCCAGCTGGGTTATCGGCCGCCGGGCCTTGGGGTGCTGGTGAAGGCACCTCCATTCCAGTGGGTGAAGGAGGAGAAGCAATGGGTGGAAGGACAGGACCACCGGAAGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGCAATAGGCGCTGGAGCGGGTGACGCAGCATCCGGAGCGGGTGAGGGCGATACCGGAGTCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTTGGAGATGGAGGTAAAACAACCGGAGAAGGCGCCGGTGTGGCTGATGGAGGAGTTAGAGGCTGTGGAGAACCCGGTGCCGGAGCCGGCGCCTGCGCCATACATAACCTCGTTAACAAAGCAAAAATCAGAACGAATCGAACCCCGGAGAATCCCATCGTCTTTATCGGGAAGAAAGAGGGAAAGGATTTGTTTTCCGCAAAACAGAGTATCTCAAAGAAGGTAGTGAAAGTGGAAGAGGCAAACGAGGGCGTTTAAGAAAGCAACAATTCGGTCACAGAATTCACTTTGCTTGTTTCGCTTTGTATCTCAGTAGCGGGTGGTAAGTCTATGTATATATAGCCTTAGCATCATCTCAAAAAAACCTTCATACAAGAATCACATACATGTGGACCGAGTAAGCAAGCTACTTAGATTCGAACACGTGTACGCGTTAGGCTGATCATATCGCAGTTTTGCATTTGAGAATCATGAGCCGTTGGATGACCCACGCGTCGGTTAGAGGAATGTCGGTGGGGACATACTTTTCTGTTTCCTTCCATATGCTACCCCTACACCTCCTTGCCAGAGGTGTTGCAATTTTCTGAAAAACGTTGGTCCAGGGTGTCAAATATGAATACACGTGGCCAAATTCCCTTTCGAGAAGACTCCCCTAAATTTCAATCCCATGCATTTATTTCCGTTGATTTTATATTTTTGTAGCCGTTGAGTTGTGTCAAGGGAGAGAAATATGGGAGTTTGGTAACCGCCACAAAAGGAAAAAAAGGGAGAATATCATTTTCAATTTGACCT

mRNA sequence

ATGTGCGACCCCGCTCCAGCTGGGTTATCGGCCGCCGGGCCTTGGGGTGCTGGTGAAGGCACCTCCATTCCAGTGGGTGAAGGAGGAGAAGCAATGGGTGGAAGGACAGGACCACCGGAAGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGCAATAGGCGCTGGAGCGGGTGACGCAGCATCCGGAGCGGGTGAGGGCGATACCGGAGTCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTTGGAGATGGAGGTAAAACAACCGGAGAAGGCGCCGGTGTGGCTGATGGAGGAGTTAGAGGCTGTGGAGAACCCGGTGCCGGAGCCGGCGCCTGCGCCATACATAACCTCGTTAACAAAGCAAAAATCAGAACGAATCGAACCCCGGAGAATCCCATCGTCTTTATCGGGAAGAAAGAGGGAAAGGATTTGTTTTCCGCAAAACAGAGTATCTCAAAGAAGGTAGTGAAAGTGGAAGAGGCAAACGAGGGCGTTTAA

Coding sequence (CDS)

ATGTGCGACCCCGCTCCAGCTGGGTTATCGGCCGCCGGGCCTTGGGGTGCTGGTGAAGGCACCTCCATTCCAGTGGGTGAAGGAGGAGAAGCAATGGGTGGAAGGACAGGACCACCGGAAGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGTAGAGATTGGAGTTGGAGTAGGAGCAATAGGCGCTGGAGCGGGTGACGCAGCATCCGGAGCGGGTGAGGGCGATACCGGAGTCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTTGGAGATGGAGGTAAAACAACCGGAGAAGGCGCCGGTGTGGCTGATGGAGGAGTTAGAGGCTGTGGAGAACCCGGTGCCGGAGCCGGCGCCTGCGCCATACATAACCTCGTTAACAAAGCAAAAATCAGAACGAATCGAACCCCGGAGAATCCCATCGTCTTTATCGGGAAGAAAGAGGGAAAGGATTTGTTTTCCGCAAAACAGAGTATCTCAAAGAAGGTAGTGAAAGTGGAAGAGGCAAACGAGGGCGTTTAA

Protein sequence

MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGPPEGVGVEIGVGVGVEIGVGVGAIGAGAGDAASGAGEGDTGVGEGDGALFGVGVGDGGKTTGEGAGVADGGVRGCGEPGAGAGACAIHNLVNKAKIRTNRTPENPIVFIGKKEGKDLFSAKQSISKKVVKVEEANEGV
Homology
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BLAST of CsaV3_6G045160 vs. NCBI nr
Match: XP_011658485.1 (PREDICTED: jacalin-related lectin 34-like [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 1.7e-33
Identity = 164/175 (93.71%), Postives = 164/175 (93.71%), Query Frame = 0 

Query: 1   MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGPPXXXXXXXXXXXXXXXXXXXXX 60
           MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGPP           XXXXXXXXXX
Sbjct: 1   MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGPP--------EGVXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 ACAIHNLVNKAKIRTNRTPENPIVFIGKKEGKDLFSAKQSISKKVVKVEEANEGV 176
           ACAIHNLVNKAKIRTNRTPENPIVFIGKKEGKDLFSAKQSISKKVVKVEEANEGV
Sbjct: 121 ACAIHNLVNKAKIRTNRTPENPIVFIGKKEGKDLFSAKQSISKKVVKVEEANEGV 167

The following BLAST results are available for this feature:
BLAST of CsaV3_6G045160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658485.11.7e-3393.71PREDICTED: jacalin-related lectin 34-like [Cucumis sativus][more]
BLAST of CsaV3_6G045160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G045160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G045160 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G045160.1CsaV3_6G045160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G045160Cucsa.104120Cucumber (Gy14) v1cgycucB126
CsaV3_6G045160CmaCh03G008280Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G045160CmoCh03G008720Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G045160Carg00719Silver-seed gourdcarcucB0442
CsaV3_6G045160Cla014120Watermelon (97103) v1cucwmB526
CsaV3_6G045160ClCG01G018510Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G045160Lsi01G007980Bottle gourd (USVL1VR-Ls)cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G045160Cucumber (Chinese Long) v3cuccucB089
CsaV3_6G045160Cucumber (Chinese Long) v3cuccucB091
CsaV3_6G045160Cucumber (Chinese Long) v3cuccucB149
CsaV3_6G045160Silver-seed gourdcarcucB0069
CsaV3_6G045160Silver-seed gourdcarcucB0670
CsaV3_6G045160Silver-seed gourdcarcucB0797
CsaV3_6G045160Cucumber (Gy14) v2cgybcucB088
CsaV3_6G045160Cucumber (Gy14) v2cgybcucB151
CsaV3_6G045160Cucumber (Gy14) v2cgybcucB298
CsaV3_6G045160Cucumber (Gy14) v1cgycucB256
CsaV3_6G045160Cucumber (Gy14) v1cgycucB490
CsaV3_6G045160Cucurbita maxima (Rimu)cmacucB0222
CsaV3_6G045160Cucurbita maxima (Rimu)cmacucB0229
CsaV3_6G045160Cucurbita maxima (Rimu)cmacucB0955
CsaV3_6G045160Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G045160Cucurbita moschata (Rifu)cmocucB0029
CsaV3_6G045160Cucurbita moschata (Rifu)cmocucB0209
CsaV3_6G045160Cucurbita moschata (Rifu)cmocucB0942
CsaV3_6G045160Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB0137
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB0985
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB1032
CsaV3_6G045160Cucurbita pepo (Zucchini)cpecucB1039
CsaV3_6G045160Wild cucumber (PI 183967)cpicucB112
CsaV3_6G045160Wild cucumber (PI 183967)cpicucB187
CsaV3_6G045160Wild cucumber (PI 183967)cpicucB363
CsaV3_6G045160Bottle gourd (USVL1VR-Ls)cuclsiB485
CsaV3_6G045160Bottle gourd (USVL1VR-Ls)cuclsiB514
CsaV3_6G045160Melon (DHL92) v3.5.1cucmeB482
CsaV3_6G045160Melon (DHL92) v3.5.1cucmeB494
CsaV3_6G045160Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G045160Melon (DHL92) v3.6.1cucmedB471
CsaV3_6G045160Melon (DHL92) v3.6.1cucmedB482
CsaV3_6G045160Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G045160Watermelon (Charleston Gray)cucwcgB453
CsaV3_6G045160Watermelon (Charleston Gray)cucwcgB531
CsaV3_6G045160Watermelon (97103) v1cucwmB498
CsaV3_6G045160Watermelon (97103) v1cucwmB560
CsaV3_6G045160Watermelon (97103) v2cucwmbB430
CsaV3_6G045160Watermelon (97103) v2cucwmbB442
CsaV3_6G045160Watermelon (97103) v2cucwmbB521
CsaV3_6G045160Wax gourdcucwgoB612
CsaV3_6G045160Wax gourdcucwgoB641
CsaV3_6G045160Wax gourdcucwgoB667