CsaV3_6G034510 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G034510
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA polymerase sigma factor RpoD like
Location	chr6 : 19361398 .. 19363556 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAGAGAAAAGGCAGAAACAAAGAAGTTTGGAGTGGAAGAAAAATGTAATCCTTTCTATTGACATGAAAGTAGAGGAGTTGAAGTTAAATGTTCGCAACATGGCCTATCTAAAAGAAATCAACCTTTGTGGGCCAAAATGTCTTTTTTTTCTCTCTTTTTTTCTTTTCCAATCTTTATCAAGCCCTTGGTGGGGTTGGGTCAAAATTTACTAGCCAAGGGGCCAACTCCAAGACCTACTTTGCTACAAATCTTTCTTTTACTATACTATAAATGACCAACACCAAACGCACTTCAACCCTTCATTTTCTCTCCCCTTACCCTTATATTTTACTCTCAACTATCTTGCCTTCCAATCAAGCATGAATGTGTACAGAGATCCAAACTCCTGTTACTTCCATCCCAAAGAAAAAGTGGTGGGCGTCTGTGCTTTGTGCTTAAACGAGAAGCTTCTTATTTTGGCGTCCAGACGAGGCCGCTACCACCACTCTTCACCCCGAACCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGTTCTTTCATCAGTCGTCTCGAATTCCGGCATTGGAAGCCGGAAAACTCCGACGATGAAGCCTCCACCAGTCAAGAAGGTACTTCCTATTCAGCTTCAATATGCATTACAATCCTTTTTCAGCTGTCATATATAAATAAGTAGCATGAAGAAAACTACATTTTTTTCCCTAGTTTCAAATCTCATAATCATGAAGAAAATCAGTGTTCATAGGCATTTTCAGCTGTGTGATATAAAAAACTGCCCAAAAAGAAGAAATTATTAATGGGTTTGTGAGTGAGTGTGTGTGTATCTGTTTCTCTATCCATGACTATGGAATAGGAGCTATTCAGAGGAGGAGAGTTCAATTGGAAATGAGTGAAATGCAACCAAAAGACGAGAGAAGAAAAGGCGGTGGAATGGTAAATGAGTGGTTTGGCAGAAGGGGGCAGTGTCAGAAATACAGAAAGTACAAGAATAAAAAAGAAACAGAGTAAGTAAACGGTGGAGGAGACTGTTTAAGAACAGTTGGTAAAAGTTCAAGTTTGAATTGTTCGAAATTATTACAGAGAATCAGAGTAGACAGGTTCTGTAATCACAAAGATTAGGCAGAAACTAGACAGAATTTTGGGATAAAAACTCTGAAACAAAGTAGTGGGGAAGGGGCAAGGAAAAGAAAACAGAAGTTCACATCTGGACAACACTGACGAATATCTTTCATTTTTCTTTTCTCTCTTTCTTTTACTATTAGTTAATTGCATATTTATTTGAGAGATCAGTCTTTGGATTTAATTTTTTTTTTCTAATGGGGCCCACTAAAAAAATGATGTAGATTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAAGAGAACAAGGTCTCAGAGGTTTCCCTGGAAAATTGCATCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCGCTCAGGTGGCGGAAGCGGATTGGACACCTCTTCCAGCTCATCAGAAGGAAAAGGTCAAACAAAGGAACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAGCTCTGACAAGGTCAAGAAACACTGAATAGACAAAAGAGAGAATATCTATGCGTGGACTGGAAATTCAAATGTGGTTTGTGTAAAGATTTGAGTCAAATCAACTACTCATATATATATATATATATATATATTTTTTCTCATTTGAGCTCTTGCAGGTTAAACAATTTATGAGTGTAAATGAACTATAATGTGCTTGAAATATATATCTCTTCTTTTTTTCTCTTATGTAGAATACTCCAGTATCGAACACTGCAATTAAATTGAACAATTGAAGAAGAAATTTTCCCATTCGTGTGCACATAGTGGGAAACAATGGAGCAAGAGGGGCCCCGTAGCTACACTCCTCTAATTTGGCCTATAGTTGTCTTAGTGCTTCAAAATCTGAACCATAAAACAGTCGTTACATGCATATATAAATCTTTCAAACCATGATAATTGTATTAAAAAAAATTATATCTTTGGAATTATATGTACAACTAATCGAATGACTTGTTTATTGTATTGAATATGAATTAGGAGAG

mRNA sequence

ATGAATGTGTACAGAGATCCAAACTCCTGTTACTTCCATCCCAAAGAAAAAGTGGTGGGCGTCTGTGCTTTGTGCTTAAACGAGAAGCTTCTTATTTTGGCGTCCAGACGAGGCCGCTACCACCACTCTTCACCCCGAACCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGTTCTTTCATCAGTCGTCTCGAATTCCGGCATTGGAAGCCGGAAAACTCCGACGATGAAGCCTCCACCAGTCAAGAAGATTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAAGAGAACAAGGTCTCAGAGGTTTCCCTGGAAAATTGCATCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCGCTCAGGTGGCGGAAGCGGATTGGACACCTCTTCCAGCTCATCAGAAGGAAAAGGTCAAACAAAGGAACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAGCTCTGACAAGGTCAAGAAACACTGAATAG

Coding sequence (CDS)

ATGAATGTGTACAGAGATCCAAACTCCTGTTACTTCCATCCCAAAGAAAAAGTGGTGGGCGTCTGTGCTTTGTGCTTAAACGAGAAGCTTCTTATTTTGGCGTCCAGACGAGGCCGCTACCACCACTCTTCACCCCGAACCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGTTCTTTCATCAGTCGTCTCGAATTCCGGCATTGGAAGCCGGAAAACTCCGACGATGAAGCCTCCACCAGTCAAGAAGATTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAAGAGAACAAGGTCTCAGAGGTTTCCCTGGAAAATTGCATCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCGCTCAGGTGGCGGAAGCGGATTGGACACCTCTTCCAGCTCATCAGAAGGAAAAGGTCAAACAAAGGAACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAGCTCTGACAAGGTCAAGAAACACTGAATAG

Protein sequence

MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFAFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSWNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWIRALTRSRNTE

Homology

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BLAST of CsaV3_6G034510 vs. NCBI nr
Match: XP_004150445.1 (PREDICTED: uncharacterized protein LOC101207127 [Cucumis sativus] >KGN47729.1 hypothetical protein Csa_6G390120 [Cucumis sativus])

HSP 1 Score: 396.0 bits (1016), Expect = 7.4e-107
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60
           MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA
Sbjct: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60

Query: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120
           FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW
Sbjct: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120

Query: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180
           NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI
Sbjct: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180

Query: 181 RALTRSRNTE 191
           RALTRSRNTE
Sbjct: 181 RALTRSRNTE 190

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BLAST of CsaV3_6G034510 vs. NCBI nr
Match: XP_008466708.1 (PREDICTED: uncharacterized protein LOC103504055 [Cucumis melo])

HSP 1 Score: 389.0 bits (998), Expect = 9.0e-105
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60
           MNVYRDPNSCYFHPKEKVVGVCALCLNEKLL+LA RRGRYHHSSPRTCRKTPINLSKIFA
Sbjct: 31  MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLMLAPRRGRYHHSSPRTCRKTPINLSKIFA 90

Query: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120
           FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW
Sbjct: 91  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 150

Query: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180
           NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRR RSNKGTVCHVEGVKTRKGWI
Sbjct: 151 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRTRSNKGTVCHVEGVKTRKGWI 210

Query: 181 RALTRSRNTE 191
           R LTRSRNTE
Sbjct: 211 RTLTRSRNTE 220

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BLAST of CsaV3_6G034510 vs. NCBI nr
Match: XP_022938530.1 (uncharacterized protein LOC111444738 [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 1.1e-94
Identity = 175/191 (91.62%), Postives = 180/191 (94.24%), Query Frame = 0


Query: 1   MNVYRDP-NSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIF 60
           MNVYRD  +SCYFHPKE VVGVCA+CLNE+L ILASRRGR HHSS R+CRKTPINLSKIF
Sbjct: 1   MNVYRDQISSCYFHPKEIVVGVCAVCLNERLHILASRRGR-HHSSARSCRKTPINLSKIF 60

Query: 61  AFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILS 120
           AFSSFISRLEFRHWKP NSDDE STSQEDSFISINFGKNGVGSWEENKVSEVSLENC LS
Sbjct: 61  AFSSFISRLEFRHWKPGNSDDEVSTSQEDSFISINFGKNGVGSWEENKVSEVSLENCSLS 120

Query: 121 WNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180
           WNHHLTKDSKETKTVIEH KTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW
Sbjct: 121 WNHHLTKDSKETKTVIEHGKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180

Query: 181 IRALTRSRNTE 191
           I+ LTRSRNTE
Sbjct: 181 IKTLTRSRNTE 190

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BLAST of CsaV3_6G034510 vs. NCBI nr
Match: XP_022141395.1 (uncharacterized protein LOC111011807 [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 1.2e-93
Identity = 174/191 (91.10%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MNVYRDP-NSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIF 60
           MNVYRD  +SCYFHPKE VVGVCALCLNE+LLILAS+RGR HHSS RTCRKTPINLSKIF
Sbjct: 1   MNVYRDQISSCYFHPKEIVVGVCALCLNERLLILASKRGR-HHSSARTCRKTPINLSKIF 60

Query: 61  AFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILS 120
           AFSSFI+RLEFRH KPENSDDEASTS EDSFISINFGKNGVGSWE+NKVSEVSLENC LS
Sbjct: 61  AFSSFITRLEFRHPKPENSDDEASTSHEDSFISINFGKNGVGSWEKNKVSEVSLENCSLS 120

Query: 121 WNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180
           WNHHLTKDSKETKTVIEH KTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW
Sbjct: 121 WNHHLTKDSKETKTVIEHGKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180

Query: 181 IRALTRSRNTE 191
           +R LTRSRN+E
Sbjct: 181 MRTLTRSRNSE 190

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BLAST of CsaV3_6G034510 vs. NCBI nr
Match: XP_022993742.1 (uncharacterized protein LOC111489653 isoform X2 [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 2.7e-93
Identity = 172/191 (90.05%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MNVYRDP-NSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIF 60
           MNVYRD  +SCYFHPKE VVG+CALCLNE+L ILASRRGR H SS R+CRKTPINLSKIF
Sbjct: 1   MNVYRDQISSCYFHPKEIVVGICALCLNERLHILASRRGR-HQSSARSCRKTPINLSKIF 60

Query: 61  AFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILS 120
           A+SSFISRLEFRHWKP NSDDE STSQEDSFISINFGKNGVGSWEENKVSEVSLENC LS
Sbjct: 61  AYSSFISRLEFRHWKPGNSDDEVSTSQEDSFISINFGKNGVGSWEENKVSEVSLENCSLS 120

Query: 121 WNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180
           WNHHLTKDSKETKTVIEH KTRASL+WRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW
Sbjct: 121 WNHHLTKDSKETKTVIEHGKTRASLKWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGW 180

Query: 181 IRALTRSRNTE 191
           I+ LTRSRNTE
Sbjct: 181 IKTLTRSRNTE 190

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BLAST of CsaV3_6G034510 vs. TAIR10
Match: AT1G21830.1 (unknown protein)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-36
Identity = 93/205 (45.37%), Postives = 120/205 (58.54%), Query Frame = 0


Query: 1   MNVYRDPNS--CYFHPKEKVVGVCALCLNEKLLILAS--RRGRYHHSSPRTCRKTPINLS 60
           M++Y+D +S  CYFHPKE+ VGVC LCLNE+LL+LAS  R  R  HSS        I+L 
Sbjct: 1   MDMYKDDSSPYCYFHPKEEYVGVCPLCLNERLLVLASKQRSSRTKHSSSSPI----ISLP 60

Query: 61  KIFAFSSFISRLEFRHWK-PENSDDEASTSQEDSFISINFGKNGVGSWEENKV-----SE 120
           KIFA SS +SRL+ RH K   +SD + STSQEDSFISI F  +G  SWE+  V       
Sbjct: 61  KIFALSSLLSRLDLRHRKFHPSSDLDVSTSQEDSFISIKFENDGNASWEKKAVVTXXXXX 120

Query: 121 VSLENCILSWNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCH- 180
                                 +++EH+  ++SLRWRKRIGHLF +I+ K  +  + CH 
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXSIVEHNSAKSSLRWRKRIGHLFHVIKLKSGSSTSSCHV 180

Query: 181 ----VEGVKTRK-GW-IRALTRSRN 189
               VEG K RK GW +R LTR ++
Sbjct: 181 APSKVEGTKVRKQGWMVRTLTRKKS 201

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BLAST of CsaV3_6G034510 vs. TAIR10
Match: AT1G44608.1 (unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 61/169 (36.09%), Postives = 84/169 (49.70%), Query Frame = 0


Query: 8   NSCYFHPKEKVVGVCALCLNEKLLILAS---RRGRYHHSSPRTCRKTPINLS---KIFAF 67
           +SC  HP + + GVC LCLNE+LL++AS    R     SS +T  KT +  S   K    
Sbjct: 10  SSCNIHPVDVIEGVCPLCLNERLLVVASLQRLRPPCPPSSYQTIPKTILQNSSRKKPIRL 69

Query: 68  SSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSWN 127
            SF S  E RH K ++  + +  S EDSFISINF  N   SWE+ K ++         + 
Sbjct: 70  FSFFSFFELRHHKSDH-QNTSIISPEDSFISINFEDNRATSWEKGKETQ---------YQ 129

Query: 128 HHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHV 171
           H  TK     + V + +     L WRKRI  L  +I  K  ++   CH+
Sbjct: 130 HVHTK----KEFVPQSTPLPPLLSWRKRIRRLLHVISFK--SRSRACHL 162

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BLAST of CsaV3_6G034510 vs. TrEMBL
Match: tr|A0A0A0KFU9|A0A0A0KFU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G390120 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 4.9e-107
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60
           MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA
Sbjct: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60

Query: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120
           FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW
Sbjct: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120

Query: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180
           NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI
Sbjct: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180

Query: 181 RALTRSRNTE 191
           RALTRSRNTE
Sbjct: 181 RALTRSRNTE 190

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BLAST of CsaV3_6G034510 vs. TrEMBL
Match: tr|A0A1S3CRU8|A0A1S3CRU8_CUCME (uncharacterized protein LOC103504055 OS=Cucumis melo OX=3656 GN=LOC103504055 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 6.0e-105
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIFA 60
           MNVYRDPNSCYFHPKEKVVGVCALCLNEKLL+LA RRGRYHHSSPRTCRKTPINLSKIFA
Sbjct: 31  MNVYRDPNSCYFHPKEKVVGVCALCLNEKLLMLAPRRGRYHHSSPRTCRKTPINLSKIFA 90

Query: 61  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 120
           FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW
Sbjct: 91  FSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILSW 150

Query: 121 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWI 180
           NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRR RSNKGTVCHVEGVKTRKGWI
Sbjct: 151 NHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRTRSNKGTVCHVEGVKTRKGWI 210

Query: 181 RALTRSRNTE 191
           R LTRSRNTE
Sbjct: 211 RTLTRSRNTE 220

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BLAST of CsaV3_6G034510 vs. TrEMBL
Match: tr|A0A2P4HMY7|A0A2P4HMY7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39356 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.2e-62
Identity = 129/200 (64.50%), Postives = 151/200 (75.50%), Query Frame = 0


Query: 2   NVYRDPNS-CYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCR--------KTP 61
           N +R+ NS CYFHP E  +GVC LCLNE+LL+LAS++G  HHSS R+ R        K P
Sbjct: 3   NGHREENSFCYFHPNEVAIGVCPLCLNERLLVLASKQG--HHSSSRSTRRAQSSMYKKPP 62

Query: 62  INLSKIFAFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVS 121
           INL KIFA  SF+SRLEFRHWK +N D +ASTSQEDSFISI F  NGVGSWE+N +S+VS
Sbjct: 63  INLPKIFALGSFLSRLEFRHWKSDNPDHDASTSQEDSFISIKFEHNGVGSWEKNTLSKVS 122

Query: 122 LENCILSWNHHLTKDS-KETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTV-CHV 181
           LEN  ++W+  L+K+S KETKTVIEH K R SLRWRKRIGHLFQ+IR KRSNK  V   V
Sbjct: 123 LENYNIAWDQSLSKESNKETKTVIEHGKPRVSLRWRKRIGHLFQVIRWKRSNKANVGSKV 182

Query: 182 EGVKTRKGWIRALTRSRNTE 191
           EGVK RKGWIR LT+ +  E
Sbjct: 183 EGVKVRKGWIRTLTKRKTME 200

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BLAST of CsaV3_6G034510 vs. TrEMBL
Match: tr|A0A2N9HJG6|A0A2N9HJG6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40010 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.9e-60
Identity = 129/204 (63.24%), Postives = 150/204 (73.53%), Query Frame = 0


Query: 1   MNVYRDPNS-CYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCR--------KT 60
           MN YR+ NS CYFHP +  +GVC LCLNE+LLILAS +G  + SS R+ R        K 
Sbjct: 1   MNGYREENSFCYFHPNQVAIGVCPLCLNERLLILASNQG--YLSSARSSRRAQSSMYKKP 60

Query: 61  PINLSKIFAFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENK-VSE 120
           PI L KIFA  SF+SRLEFRHWK +  D +ASTSQEDSFISI F  NGVGSWE+N  +S+
Sbjct: 61  PITLPKIFALGSFLSRLEFRHWKSDKHDHDASTSQEDSFISIRFEPNGVGSWEKNNTLSK 120

Query: 121 VSLENCILSWNHHLTKD---SKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTV 180
           VSLENC L+WN  ++KD    +ETKTVIEH K R SLRWRKRIGHLFQLIR KRSNKG V
Sbjct: 121 VSLENCNLTWNQRMSKDKECKQETKTVIEHGKPRVSLRWRKRIGHLFQLIRWKRSNKGNV 180

Query: 181 CH-VEGVKTRKGWIRALTRSRNTE 191
            + VEGVK RKGWI+ LT+ +  E
Sbjct: 181 GNKVEGVKVRKGWIKTLTKRKTVE 202

[Close]

BLAST of CsaV3_6G034510 vs. TrEMBL
Match: tr|A0A2P6PX94|A0A2P6PX94_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295711 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.9e-60
Identity = 125/197 (63.45%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 2   NVYRDPNS--CYFHPKEKVVGVCALCLNEKLLILASRRGRYHHSSPRTCRKTPINLSKIF 61
           N YR+P++  CYFHPKE VVGVCALCL E+LL+LA+R+G  HH S ++    PI L KIF
Sbjct: 5   NGYREPDNSFCYFHPKEVVVGVCALCLTERLLVLAARKG--HHRSTQSFSHRPITLPKIF 64

Query: 62  AFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCILS 121
           AFSSF++R      KP+  D EASTSQEDSFISI F +NGV SWE+NKVS+VSL++C + 
Sbjct: 65  AFSSFLNR------KPDYLDQEASTSQEDSFISIKFEENGVASWEKNKVSKVSLDHCNMP 124

Query: 122 WNHHLTKDS---KETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCH----VEG 181
           WNH+ +KDS   KETK+VIEH K    LRWRKRIGHLFQL R KRSNKG+VCH    VEG
Sbjct: 125 WNHNFSKDSKDAKETKSVIEHGKAHTPLRWRKRIGHLFQLNRWKRSNKGSVCHVSNKVEG 184

Query: 182 VKTRKGWIRALTRSRNT 190
           VK RKGWIR+LT+ R +
Sbjct: 185 VKVRKGWIRSLTKRRGS 193

The following BLAST results are available for this feature:

BLAST of CsaV3_6G034510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150445.1	7.4e-107	100.00	PREDICTED: uncharacterized protein LOC101207127 [Cucumis sativus] >KGN47729.1 hy...	[more]
XP_008466708.1	9.0e-105	97.89	PREDICTED: uncharacterized protein LOC103504055 [Cucumis melo]	[more]
XP_022938530.1	1.1e-94	91.62	uncharacterized protein LOC111444738 [Cucurbita moschata]	[more]
XP_022141395.1	1.2e-93	91.10	uncharacterized protein LOC111011807 [Momordica charantia]	[more]
XP_022993742.1	2.7e-93	90.05	uncharacterized protein LOC111489653 isoform X2 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G034510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21830.1	3.7e-36	45.37	unknown protein	[more]
AT1G44608.1	1.4e-14	36.09	unknown protein	[more]

BLAST of CsaV3_6G034510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G034510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFU9\|A0A0A0KFU9_CUCSA	4.9e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G390120 PE=4 SV=1	[more]
tr\|A0A1S3CRU8\|A0A1S3CRU8_CUCME	6.0e-105	97.89	uncharacterized protein LOC103504055 OS=Cucumis melo OX=3656 GN=LOC103504055 PE=...	[more]
tr\|A0A2P4HMY7\|A0A2P4HMY7_QUESU	8.2e-62	64.50	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39356 PE=4 SV=1	[more]
tr\|A0A2N9HJG6\|A0A2N9HJG6_FAGSY	5.9e-60	63.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40010 PE=4 SV=1	[more]
tr\|A0A2P6PX94\|A0A2P6PX94_ROSCH	5.9e-60	63.45	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295711 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008004	UPF0503

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G034510.1	CsaV3_6G034510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Uncharacterised protein family UPF0503	PFAM	PF05340	DUF740	coord: 5..60 e-value: 1.6E-5 score: 23.9
None	No IPR available	PANTHER	PTHR35995	FAMILY NOT NAMED	coord: 6..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G034510	CSPI06G20440	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G034510	Cucsa.172900	Cucumber (Gy14) v1	cgycucB276
CsaV3_6G034510	CmaCh15G006810	Cucurbita maxima (Rimu)	cmacucB0364
CsaV3_6G034510	CmaCh04G023590	Cucurbita maxima (Rimu)	cmacucB0908
CsaV3_6G034510	CmoCh04G024690	Cucurbita moschata (Rifu)	cmocucB0900
CsaV3_6G034510	CmoCh15G006940	Cucurbita moschata (Rifu)	cmocucB0360
CsaV3_6G034510	Cp4.1LG13g04800	Cucurbita pepo (Zucchini)	cpecucB0239
CsaV3_6G034510	Cp4.1LG01g20350	Cucurbita pepo (Zucchini)	cpecucB0570
CsaV3_6G034510	Carg24442	Silver-seed gourd	carcucB0480
CsaV3_6G034510	Carg01528	Silver-seed gourd	carcucB0875
CsaV3_6G034510	Cla013943	Watermelon (97103) v1	cucwmB493
CsaV3_6G034510	MELO3C010605	Melon (DHL92) v3.5.1	cucmeB477
CsaV3_6G034510	ClCG08G005630	Watermelon (Charleston Gray)	cucwcgB526
CsaV3_6G034510	Lsi08G004310	Bottle gourd (USVL1VR-Ls)	cuclsiB511
CsaV3_6G034510	MELO3C010605.2	Melon (DHL92) v3.6.1	cucmedB467
CsaV3_6G034510	Cla97C08G148410	Watermelon (97103) v2	cucwmbB516
CsaV3_6G034510	Bhi04G001523	Wax gourd	cucwgoB591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G034510	Cucumber (Gy14) v2	cgybcucB298