Carg24442 (gene) Silver-seed gourd

Overview
NameCarg24442
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA polymerase sigma factor RpoD like
LocationCucurbita_argyrosperma_scaffold_353 : 101881 .. 103503 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATAAATGACCAACACCAACCGCACCTCCAACCCTCAATTTCTCTCACTTCACTTCACTTACATTCTACTCCCCACTTTATTGCTTTACAATCAAAAAGCATGAATGTGTATAGAGCTCAAATGTCTTCCTGTTACTTCCATCCCAAAGAACTAGTGGTGGGTGTCTGCGCTTTGTGCTTAAACGAGAGGCTGCTTATCTTGGCGTCCAAACGAGGTCCCCATCGCCACCATTCTTCAGCCCCAACCTGCCGGAAAACTCCCATCAACCTCTCTAAGATCTTCGCTTTTACCTCTTTCATCACCCGTTTCGAATTCCGCCGTTGGAAGCCGGAAAACTCGGCCGGTGAAGCCTCCACCAGTCAAGAAGGTACTTCCCTTTTCACCTTTATACACATCTATATATCCTTTCTCCCAGTTCAAATCTCAGAATCATGAAGAAAATTATTATTCCTTAGCATTATCAGCTGTCTGATACAAAAACTGGCAAAAAAAGAAGAAAACTATTATGGGTTTGTCTAAAGAATAAGAGCTATGTTTCCTAGCTTTCCTTTAGGTTCTCTAAAGGCCTTGTACCAACGAAAATACAATACTTACTTATAAACTCAGGATCATTTCATAAATTAGTCAACATGAGATTCATTCTCAACAATCTTTCCTTCGAATAAAGTACACCGTCGAACCTCTCGTGAGGTCTATGGTGCCCTCGAACAAGGACGAGAGTTCAAAATGAGTTAAAGGCTACCAAAAGAAGGAAAGGAAGAAGGGAAGGAAGGGAAATGAGTGGTTTGGCAGAAGGGGGCGGGGTGTCAGAAACACAGAAAGTACAAGAATAAAAATGGAACAGAGTAAGTAACGGTGGAGGAGACTGTTTAGCAACAGTTGGGAAAAGTTCAAGTTTGAATTGTTCCAATCATAACGAAGAATGAAAGTAGACAGCTTCTGTAATCTCAAAGATTAGACAGAAACTAAACATAATTGTGGGGGGTAAACACAGAAGCAAAGTGGGTAAGGGACAAGGAAAACAAAACACAAGTTTACATCTGGACAACACTGAGAAGTATCTTTCAAGTTCTTTGTTTTTTAATTGTATTTTTGTTTTTTAAAATTTTAATGTTTTGATGGGGGCCACTCAAAAAATTATGTAGACTCATTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAACAGAACAAGGTCTCAGAGGTGTTCCTGGAGAAGAACTGTAGCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAGTATGGCAAGACCCGTGCCTCGCTTAGGTGGCGGAAGCGGATCGGTCATCTATTCCAGCTCATCAGAAGGAAAAGGCCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTCAAGACAAGAAAAGGCTGGATAAAAACTCTGACAAGGTCAAGGAATTCTGAATAGGCATAAAGGAAAATCTATCCCTGAATTAGAATTCAAATATGATATGTAAAAAGATTCAAGTCTAATCAATAACGTTTTTTTTATAATTTATTTGCCTATAGTAGTCTTAGTGCTTCAAATTTTGAACAGTACACCGTCATTACTGTTAAGAATCACAAACC

mRNA sequence

ACTATAAATGACCAACACCAACCGCACCTCCAACCCTCAATTTCTCTCACTTCACTTCACTTACATTCTACTCCCCACTTTATTGCTTTACAATCAAAAAGCATGAATGTGTATAGAGCTCAAATGTCTTCCTGTTACTTCCATCCCAAAGAACTAGTGGTGGGTGTCTGCGCTTTGTGCTTAAACGAGAGGCTGCTTATCTTGGCGTCCAAACGAGGTCCCCATCGCCACCATTCTTCAGCCCCAACCTGCCGGAAAACTCCCATCAACCTCTCTAAGATCTTCGCTTTTACCTCTTTCATCACCCGTTTCGAATTCCGCCGTTGGAAGCCGGAAAACTCGGCCGGTGAAGCCTCCACCAGTCAAGAAGACTCATTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAACAGAACAAGGTCTCAGAGGTGTTCCTGGAGAAGAACTGTAGCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAGTATGGCAAGACCCGTGCCTCGCTTAGGTGGCGGAAGCGGATCGGTCATCTATTCCAGCTCATCAGAAGGAAAAGGCCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTCAAGACAAGAAAAGGCTGGATAAAAACTCTGACAAGGTCAAGGAATTCTGAATAGGCATAAAGGAAAATCTATCCCTGAATTAGAATTCAAATATGATATGTAAAAAGATTCAAGTCTAATCAATAACGTTTTTTTTATAATTTATTTGCCTATAGTAGTCTTAGTGCTTCAAATTTTGAACAGTACACCGTCATTACTGTTAAGAATCACAAACC

Coding sequence (CDS)

ACTATAAATGACCAACACCAACCGCACCTCCAACCCTCAATTTCTCTCACTTCACTTCACTTACATTCTACTCCCCACTTTATTGCTTTACAATCAAAAAGCATGAATGTGTATAGAGCTCAAATGTCTTCCTGTTACTTCCATCCCAAAGAACTAGTGGTGGGTGTCTGCGCTTTGTGCTTAAACGAGAGGCTGCTTATCTTGGCGTCCAAACGAGGTCCCCATCGCCACCATTCTTCAGCCCCAACCTGCCGGAAAACTCCCATCAACCTCTCTAAGATCTTCGCTTTTACCTCTTTCATCACCCGTTTCGAATTCCGCCGTTGGAAGCCGGAAAACTCGGCCGGTGAAGCCTCCACCAGTCAAGAAGACTCATTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAACAGAACAAGGTCTCAGAGGTGTTCCTGGAGAAGAACTGTAGCCTGTCATGGAATCACCACTTGACCAAAGACTCCAAGGAGACCAAGACTGTGATAGAGTATGGCAAGACCCGTGCCTCGCTTAGGTGGCGGAAGCGGATCGGTCATCTATTCCAGCTCATCAGAAGGAAAAGGCCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTCAAGACAAGAAAAGGCTGGATAAAAACTCTGACAAGGTCAAGGAATTCTGAATAG

Protein sequence

TINDQHQPHLQPSISLTSLHLHSTPHFIALQSKSMNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKIFAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCSLSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRKGWIKTLTRSRNSE
Homology
[Close]
BLAST of Carg24442 vs. NCBI nr
Match: XP_023546016.1 (uncharacterized protein LOC111805263 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI
Sbjct: 1   MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAFTSFITRFEFRRWKPENSA +ASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS
Sbjct: 61  FAFTSFITRFEFRRWKPENSADKASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSKETKTVIE+GK RASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKETKTVIEHGKPRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GWIKTLTRSRNSE
Sbjct: 181 GWIKTLTRSRNSE 193

[Close]
BLAST of Carg24442 vs. NCBI nr
Match: XP_022922928.1 (uncharacterized protein LOC111430757 [Cucurbita moschata])

HSP 1 Score: 391.3 bits (1004), Expect = 2.2e-105
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHR HSSAPTCRKTPINLSKI
Sbjct: 1   MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRLHSSAPTCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAFTSFITRFEFRRWKPENSA EASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS
Sbjct: 61  FAFTSFITRFEFRRWKPENSADEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSKETKTVIE+GKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKETKTVIEHGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GWIKTLTRSRNSE
Sbjct: 181 GWIKTLTRSRNSE 193

[Close]
BLAST of Carg24442 vs. NCBI nr
Match: XP_022991063.1 (uncharacterized protein LOC111487768 [Cucurbita maxima])

HSP 1 Score: 388.3 bits (996), Expect = 1.8e-104
Identity = 187/193 (96.89%), Postives = 191/193 (98.96%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI
Sbjct: 1   MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAFTSFITRFEFRRWKPENSA EASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS
Sbjct: 61  FAFTSFITRFEFRRWKPENSADEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSK+TKTVIE+GK RASLRWRKRIG+LFQLIRRKRPNKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKQTKTVIEHGKPRASLRWRKRIGNLFQLIRRKRPNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GWI+TLTRSRNSE
Sbjct: 181 GWIRTLTRSRNSE 193

[Close]
BLAST of Carg24442 vs. NCBI nr
Match: XP_022141395.1 (uncharacterized protein LOC111011807 [Momordica charantia])

HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91
Identity = 173/193 (89.64%), Postives = 180/193 (93.26%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYR Q+SSCYFHPKE+VVGVCALCLNERLLILASKRG  RHHSSA TCRKTPINLSKI
Sbjct: 1   MNVYRDQISSCYFHPKEIVVGVCALCLNERLLILASKRG--RHHSSARTCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAF+SFITR EFR  KPENS  EASTS EDSFISINFGKNGVGSWE+NKVSEV LE NCS
Sbjct: 61  FAFSSFITRLEFRHPKPENSDDEASTSHEDSFISINFGKNGVGSWEKNKVSEVSLE-NCS 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSKETKTVIE+GKTRASLRWRKRIGHLFQLIRRKR NKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKETKTVIEHGKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GW++TLTRSRNSE
Sbjct: 181 GWMRTLTRSRNSE 190

[Close]
BLAST of Carg24442 vs. NCBI nr
Match: XP_022938530.1 (uncharacterized protein LOC111444738 [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYR Q+SSCYFHPKE+VVGVCA+CLNERL ILAS+RG  RHHSSA +CRKTPINLSKI
Sbjct: 1   MNVYRDQISSCYFHPKEIVVGVCAVCLNERLHILASRRG--RHHSSARSCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAF+SFI+R EFR WKP NS  E STSQEDSFISINFGKNGVGSWE+NKVSEV LE NCS
Sbjct: 61  FAFSSFISRLEFRHWKPGNSDDEVSTSQEDSFISINFGKNGVGSWEENKVSEVSLE-NCS 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSKETKTVIE+GKTRASLRWRKRIGHLFQLIRRKR NKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKETKTVIEHGKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GWIKTLTRSRN+E
Sbjct: 181 GWIKTLTRSRNTE 190

[Close]
BLAST of Carg24442 vs. TAIR10
Match: AT1G21830.1 (unknown protein)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-32
Identity = 88/206 (42.72%), Postives = 117/206 (56.80%), Query Frame = 0 

Query: 35  MNVYRAQMSS-CYFHPKELVVGVCALCLNERLLILASKRGPHR--HHSSAPTCRKTPINL 94
           M++Y+   S  CYFHPKE  VGVC LCLNERLL+LASK+   R  H SS+P      I+L
Sbjct: 1   MDMYKDDSSPYCYFHPKEEYVGVCPLCLNERLLVLASKQRSSRTKHSSSSPI-----ISL 60

Query: 95  SKIFAFTSFITRFEFRRWKPENSAG-EASTSQEDSFISINFGKNGVGSWEQNKV----SE 154
            KIFA +S ++R + R  K   S+  + STSQEDSFISI F  +G  SWE+  V      
Sbjct: 61  PKIFALSSLLSRLDLRHRKFHPSSDLDVSTSQEDSFISIKFENDGNASWEKKAVVTXXXX 120

Query: 155 VFLEKNCSLSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCH 214
                                  +++E+   ++SLRWRKRIGHLF +I+ K  +  + CH
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXSIVEHNSAKSSLRWRKRIGHLFHVIKLKSGSSTSSCH 180

Query: 215 -----VEGVKTRK-GW-IKTLTRSRN 226
                VEG K RK GW ++TLTR ++
Sbjct: 181 VAPSKVEGTKVRKQGWMVRTLTRKKS 201

[Close]
BLAST of Carg24442 vs. TAIR10
Match: AT1G44608.1 (unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 63/178 (35.39%), Postives = 88/178 (49.44%), Query Frame = 0 

Query: 39  RAQMSSCYFHPKELVVGVCALCLNERLLILAS--KRGPHRHHSSAPTCRKTPINLS---- 98
           ++  SSC  HP +++ GVC LCLNERLL++AS  +  P    SS  T  KT +  S    
Sbjct: 6   KSSTSSCNIHPVDVIEGVCPLCLNERLLVVASLQRLRPPCPPSSYQTIPKTILQNSSRKK 65

Query: 99  --KIFAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLE 158
             ++F+F SF   FE R  K ++    +  S EDSFISINF  N   SWE+ K ++    
Sbjct: 66  PIRLFSFFSF---FELRHHKSDHQ-NTSIISPEDSFISINFEDNRATSWEKGKETQ---- 125

Query: 159 KNCSLSWNH-HLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHV 208
                 + H H  K+     T +        L WRKRI  L  +I  K  ++   CH+
Sbjct: 126 ------YQHVHTKKEFVPQSTPLP-----PLLSWRKRIRRLLHVISFK--SRSRACHL 162

[Close]
BLAST of Carg24442 vs. TrEMBL
Match: tr|A0A1S3CRU8|A0A1S3CRU8_CUCME (uncharacterized protein LOC103504055 OS=Cucumis melo OX=3656 GN=LOC103504055 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.7e-88
Identity = 174/216 (80.56%), Postives = 189/216 (87.50%), Query Frame = 0 

Query: 12  PSISLTSLHLHSTPHFIALQSKSMNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASK 71
           PS SL  L L+ T +++A QS SMNVYR   +SCYFHPKE VVGVCALCLNE+LL+LA +
Sbjct: 10  PSFSL-PLALYFTLNYLAFQS-SMNVYR-DPNSCYFHPKEKVVGVCALCLNEKLLMLAPR 69

Query: 72  RGPHRHHSSAPTCRKTPINLSKIFAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINF 131
           RG + HHSS  TCRKTPINLSKIFAF+SFI+R EFR WKPENS  EASTSQEDSFISINF
Sbjct: 70  RGRY-HHSSPRTCRKTPINLSKIFAFSSFISRLEFRHWKPENSDDEASTSQEDSFISINF 129

Query: 132 GKNGVGSWEQNKVSEVFLEKNCSLSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLF 191
           GKNGVGSWE+NKVSEV LE NC LSWNHHLTKDSKETKTVIE+ KTRASLRWRKRIGHLF
Sbjct: 130 GKNGVGSWEENKVSEVSLE-NCILSWNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLF 189

Query: 192 QLIRRKRPNKGTVCHVEGVKTRKGWIKTLTRSRNSE 228
           QLIRR R NKGTVCHVEGVKTRKGWI+TLTRSRN+E
Sbjct: 190 QLIRRTRSNKGTVCHVEGVKTRKGWIRTLTRSRNTE 220

[Close]
BLAST of Carg24442 vs. TrEMBL
Match: tr|A0A0A0KFU9|A0A0A0KFU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G390120 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.7e-87
Identity = 165/193 (85.49%), Postives = 175/193 (90.67%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 94
           MNVYR   +SCYFHPKE VVGVCALCLNE+LLILAS+RG + HHSS  TCRKTPINLSKI
Sbjct: 1   MNVYR-DPNSCYFHPKEKVVGVCALCLNEKLLILASRRGRY-HHSSPRTCRKTPINLSKI 60

Query: 95  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 154
           FAF+SFI+R EFR WKPENS  EASTSQEDSFISINFGKNGVGSWE+NKVSEV LE NC 
Sbjct: 61  FAFSSFISRLEFRHWKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLE-NCI 120

Query: 155 LSWNHHLTKDSKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCHVEGVKTRK 214
           LSWNHHLTKDSKETKTVIE+ KTRASLRWRKRIGHLFQLIRRKR NKGTVCHVEGVKTRK
Sbjct: 121 LSWNHHLTKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRK 180

Query: 215 GWIKTLTRSRNSE 228
           GWI+ LTRSRN+E
Sbjct: 181 GWIRALTRSRNTE 190

[Close]
BLAST of Carg24442 vs. TrEMBL
Match: tr|A0A2P4HMY7|A0A2P4HMY7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39356 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 123/202 (60.89%), Postives = 149/202 (73.76%), Query Frame = 0 

Query: 36  NVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCR--------KT 95
           N +R + S CYFHP E+ +GVC LCLNERLL+LASK+G   HHSS+ + R        K 
Sbjct: 3   NGHREENSFCYFHPNEVAIGVCPLCLNERLLVLASKQG---HHSSSRSTRRAQSSMYKKP 62

Query: 96  PINLSKIFAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEV 155
           PINL KIFA  SF++R EFR WK +N   +ASTSQEDSFISI F  NGVGSWE+N +S+V
Sbjct: 63  PINLPKIFALGSFLSRLEFRHWKSDNPDHDASTSQEDSFISIKFEHNGVGSWEKNTLSKV 122

Query: 156 FLEKNCSLSWNHHLTKDS-KETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTV-C 215
            LE N +++W+  L+K+S KETKTVIE+GK R SLRWRKRIGHLFQ+IR KR NK  V  
Sbjct: 123 SLE-NYNIAWDQSLSKESNKETKTVIEHGKPRVSLRWRKRIGHLFQVIRWKRSNKANVGS 182

Query: 216 HVEGVKTRKGWIKTLTRSRNSE 228
            VEGVK RKGWI+TLT+ +  E
Sbjct: 183 KVEGVKVRKGWIRTLTKRKTME 200

[Close]
BLAST of Carg24442 vs. TrEMBL
Match: tr|A0A2N9HJG6|A0A2N9HJG6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40010 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 125/206 (60.68%), Postives = 148/206 (71.84%), Query Frame = 0 

Query: 35  MNVYRAQMSSCYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCR--------K 94
           MN YR + S CYFHP ++ +GVC LCLNERLLILAS +G   + SSA + R        K
Sbjct: 1   MNGYREENSFCYFHPNQVAIGVCPLCLNERLLILASNQG---YLSSARSSRRAQSSMYKK 60

Query: 95  TPINLSKIFAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNK-VS 154
            PI L KIFA  SF++R EFR WK +    +ASTSQEDSFISI F  NGVGSWE+N  +S
Sbjct: 61  PPITLPKIFALGSFLSRLEFRHWKSDKHDHDASTSQEDSFISIRFEPNGVGSWEKNNTLS 120

Query: 155 EVFLEKNCSLSWNHHLTKD---SKETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKG 214
           +V LE NC+L+WN  ++KD    +ETKTVIE+GK R SLRWRKRIGHLFQLIR KR NKG
Sbjct: 121 KVSLE-NCNLTWNQRMSKDKECKQETKTVIEHGKPRVSLRWRKRIGHLFQLIRWKRSNKG 180

Query: 215 TVCH-VEGVKTRKGWIKTLTRSRNSE 228
            V + VEGVK RKGWIKTLT+ +  E
Sbjct: 181 NVGNKVEGVKVRKGWIKTLTKRKTVE 202

[Close]
BLAST of Carg24442 vs. TrEMBL
Match: tr|A0A2P6PX94|A0A2P6PX94_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295711 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.7e-55
Identity = 121/199 (60.80%), Postives = 146/199 (73.37%), Query Frame = 0 

Query: 36  NVYRAQMSS-CYFHPKELVVGVCALCLNERLLILASKRGPHRHHSSAPTCRKTPINLSKI 95
           N YR   +S CYFHPKE+VVGVCALCL ERLL+LA+++G   HH S  +    PI L KI
Sbjct: 5   NGYREPDNSFCYFHPKEVVVGVCALCLTERLLVLAARKG---HHRSTQSFSHRPITLPKI 64

Query: 96  FAFTSFITRFEFRRWKPENSAGEASTSQEDSFISINFGKNGVGSWEQNKVSEVFLEKNCS 155
           FAF+SF+ R      KP+    EASTSQEDSFISI F +NGV SWE+NKVS+V L+ +C+
Sbjct: 65  FAFSSFLNR------KPDYLDQEASTSQEDSFISIKFEENGVASWEKNKVSKVSLD-HCN 124

Query: 156 LSWNHHLTKDS---KETKTVIEYGKTRASLRWRKRIGHLFQLIRRKRPNKGTVCH----V 215
           + WNH+ +KDS   KETK+VIE+GK    LRWRKRIGHLFQL R KR NKG+VCH    V
Sbjct: 125 MPWNHNFSKDSKDAKETKSVIEHGKAHTPLRWRKRIGHLFQLNRWKRSNKGSVCHVSNKV 184

Query: 216 EGVKTRKGWIKTLTRSRNS 227
           EGVK RKGWI++LT+ R S
Sbjct: 185 EGVKVRKGWIRSLTKRRGS 193

The following BLAST results are available for this feature:
BLAST of Carg24442 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023546016.11.7e-10597.93uncharacterized protein LOC111805263 [Cucurbita pepo subsp. pepo][more]
XP_022922928.12.2e-10598.45uncharacterized protein LOC111430757 [Cucurbita moschata][more]
XP_022991063.11.8e-10496.89uncharacterized protein LOC111487768 [Cucurbita maxima][more]
XP_022141395.12.3e-9189.64uncharacterized protein LOC111011807 [Momordica charantia][more]
XP_022938530.12.0e-9087.56uncharacterized protein LOC111444738 [Cucurbita moschata][more]
BLAST of Carg24442 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21830.13.9e-3242.72unknown protein[more]
AT1G44608.13.3e-1535.39unknown protein[more]
BLAST of Carg24442 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg24442 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CRU8|A0A1S3CRU8_CUCME2.7e-8880.56uncharacterized protein LOC103504055 OS=Cucumis melo OX=3656 GN=LOC103504055 PE=... [more]
tr|A0A0A0KFU9|A0A0A0KFU9_CUCSA6.7e-8785.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G390120 PE=4 SV=1[more]
tr|A0A2P4HMY7|A0A2P4HMY7_QUESU5.5e-5760.89Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39356 PE=4 SV=1[more]
tr|A0A2N9HJG6|A0A2N9HJG6_FAGSY1.4e-5560.68Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40010 PE=4 SV=1[more]
tr|A0A2P6PX94|A0A2P6PX94_ROSCH6.7e-5560.80Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295711 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008004UPF0503
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24442-RACarg24442-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008004Uncharacterised protein family UPF0503PFAMPF05340DUF740coord: 40..96
e-value: 8.8E-6
score: 24.7
NoneNo IPR availablePANTHERPTHR35995FAMILY NOT NAMEDcoord: 40..226

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24442Cla013943Watermelon (97103) v1carwmB0445
Carg24442Csa6G390120Cucumber (Chinese Long) v2carcuB0478
Carg24442MELO3C010605Melon (DHL92) v3.5.1carmeB0451
Carg24442ClCG08G005630Watermelon (Charleston Gray)carwcgB0438
Carg24442CSPI06G20440Wild cucumber (PI 183967)carcpiB0483
Carg24442CmaCh04G023590Cucurbita maxima (Rimu)carcmaB0621
Carg24442CmaCh15G006810Cucurbita maxima (Rimu)carcmaB0620
Carg24442CmoCh04G024690Cucurbita moschata (Rifu)carcmoB0604
Carg24442CmoCh15G006940Cucurbita moschata (Rifu)carcmoB0603
Carg24442Lsi08G004310Bottle gourd (USVL1VR-Ls)carlsiB407
Carg24442Cp4.1LG13g04800Cucurbita pepo (Zucchini)carcpeB0626
Carg24442Cp4.1LG01g20350Cucurbita pepo (Zucchini)carcpeB0627
Carg24442MELO3C010605.2Melon (DHL92) v3.6.1carmedB0454
Carg24442CsaV3_6G034510Cucumber (Chinese Long) v3carcucB0480
Carg24442Cla97C08G148410Watermelon (97103) v2carwmbB0469
Carg24442Bhi04G001523Wax gourdcarwgoB0538
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24442Carg01528Silver-seed gourdcarcarB451
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24442Cucurbita maxima (Rimu)carcmaB0619
Carg24442Cucurbita moschata (Rifu)carcmoB0602
Carg24442Cucurbita pepo (Zucchini)carcpeB0628
Carg24442Wild cucumber (PI 183967)carcpiB0482
Carg24442Cucumber (Chinese Long) v2carcuB0477
Carg24442Cucumber (Chinese Long) v3carcucB0479
Carg24442Bottle gourd (USVL1VR-Ls)carlsiB406
Carg24442Melon (DHL92) v3.5.1carmeB0452
Carg24442Melon (DHL92) v3.6.1carmedB0455
Carg24442Watermelon (Charleston Gray)carwcgB0437
Carg24442Watermelon (97103) v1carwmB0446
Carg24442Watermelon (97103) v2carwmbB0468
Carg24442Wax gourdcarwgoB0540
Carg24442Cucumber (Gy14) v2carcgybB0455
Carg24442Cucumber (Gy14) v2carcgybB0456