CsaV3_6G023860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G023860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCollagen alpha-1(III) chain like
Locationchr6 : 15838439 .. 15840207 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTTATTGTAAGTCAAGTTAACTCACTCTTAGAAATATGGTGGAAGGGGAATGGGTGTGTAGAACATTAAATGATAGACAAATTTATGCATAGAAGATGTTGGTAACAAGTACTAAAAAATTTATGTTTGAATTTCTTTAACCTACAAGAAGAACAAAATCATATTTTAAATTTTTATATCCCCTCATCATCCTCTTATAAAAAAGAAAGAAAGAAAGAAATAATAGAACTATAAAGCAAACCACCATCTCTCACCTCTCTCCATCTAACTTCTACCTTTTCAAATTCCCTCTTGAAAAAGAAAAAAAAATACCTTCCTCTGATTTGATCTCTTCACCTTCCTAACCCCCATGTCCACCAAATCCCCTGTTTTCCCCTTCCCTGAAGAACCTCAACATTTCAGCGACTATGGCTTCGACCCTCAAATCGACTATTTCCAGGTTCCCTTTCTTCCCCCTTTTTTTTTCAAAAAAAAAAAAAAAAGAGAGACTAATATCATTCTTCATTAATTCATTTGTAATCATTTTTTTTGTCCTTTTTAAATTTAGGTTCTGGAAGAAGCAAGAAAACACAGACGAGAATCATCAAGATCCATAGACTCCCTTCATTTCAAGCTCCAAAAACCCATTTCCAAAGACGATTCAAAGAACATCACAAAGAAGAAGAAAAAGCGTTGGTGGAAAAACGCTTTCCTCTTCTTCAAATGGAAATGGATCCACATCCACCACCAAAACGACGCCGCTAATTTTCTTCACGACGACGACGTTCATCAAGCCAGAGCCCGTGCTTTCCGTGCTTCCATTTCCGGTCCGGTTTATGTAACGGAAAGTCGTAGCGGTTCCTCTACTCCTTGCCGCTCCACCACTCGACCCTCCTCCGGTCCACTCGCCGGAACTCTAACGCCCACTAGAAAAGGAGACGTTGAAATCCCTTATCTTAGCCTCCGAGAACTCAACATGGAGCAACAACAATATAGAATTTCCTCCTCCGCTCCCATGCCTATTTACTTAGTCACTTAAAATTAATTAACTAAAACAAAAACTTCATCAACAACAGCAGCAGCAGCAACAACAAATGCTTTCGTTTTCTTCTTTTTCTTCTCTCTGGTGGGTGTTAAATGGGTTGTCGATTGGGTGGGTTTCCCGGCGGGGCCTGCGACGGGAAGTTGTTTTTCTTTTCTTAATTTTATAAATTGGGTGCAAAAAGGTGTGTTGATCCATCGGGAAAAGGATGGGATCTTTTCTTTTGATCCGCCTTTATTGATTTACGCGTTCAACAGGTTTATCGTCTTTTCATCTGACCTTTTCTTTTCTATTTATTATTATTATTAATTATTATTATATTATGTTTAATGATGTTTTTAATTTCTCCAGATTATTAGGAGTTTAGCTTTAAAAAGGTTTGTAATCTTCCATCCTATTATTAACCCCATAATCATCATATTAGATTTCTTTTCTTTCTCCTATTACTAGGTTCTCTTAAATGTGTTTATTTCCATCTTTAACTTACCACATACTCTCTAAAATAGGGGTTTAAAATACCAAACTAATATTTGATTCTG

mRNA sequence

ATGTCCACCAAATCCCCTGTTTTCCCCTTCCCTGAAGAACCTCAACATTTCAGCGACTATGGCTTCGACCCTCAAATCGACTATTTCCAGGTTCTGGAAGAAGCAAGAAAACACAGACGAGAATCATCAAGATCCATAGACTCCCTTCATTTCAAGCTCCAAAAACCCATTTCCAAAGACGATTCAAAGAACATCACAAAGAAGAAGAAAAAGCGTTGGTGGAAAAACGCTTTCCTCTTCTTCAAATGGAAATGGATCCACATCCACCACCAAAACGACGCCGCTAATTTTCTTCACGACGACGACGTTCATCAAGCCAGAGCCCGTGCTTTCCGTGCTTCCATTTCCGGTCCGGTTTATGTAACGGAAAGTCGTAGCGGTTCCTCTACTCCTTGCCGCTCCACCACTCGACCCTCCTCCGGTCCACTCGCCGGAACTCTAACGCCCACTAGAAAAGGAGACGTTGAAATCCCTTATCTTAGCCTCCGAGAACTCAACATGGAGCAACAACAATATAGAATTTCCTCCTCCGCTCCCATGCCTATTTACTTAGTCACTTAA

Coding sequence (CDS)

ATGTCCACCAAATCCCCTGTTTTCCCCTTCCCTGAAGAACCTCAACATTTCAGCGACTATGGCTTCGACCCTCAAATCGACTATTTCCAGGTTCTGGAAGAAGCAAGAAAACACAGACGAGAATCATCAAGATCCATAGACTCCCTTCATTTCAAGCTCCAAAAACCCATTTCCAAAGACGATTCAAAGAACATCACAAAGAAGAAGAAAAAGCGTTGGTGGAAAAACGCTTTCCTCTTCTTCAAATGGAAATGGATCCACATCCACCACCAAAACGACGCCGCTAATTTTCTTCACGACGACGACGTTCATCAAGCCAGAGCCCGTGCTTTCCGTGCTTCCATTTCCGGTCCGGTTTATGTAACGGAAAGTCGTAGCGGTTCCTCTACTCCTTGCCGCTCCACCACTCGACCCTCCTCCGGTCCACTCGCCGGAACTCTAACGCCCACTAGAAAAGGAGACGTTGAAATCCCTTATCTTAGCCTCCGAGAACTCAACATGGAGCAACAACAATATAGAATTTCCTCCTCCGCTCCCATGCCTATTTACTTAGTCACTTAA

Protein sequence

MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKDDSKNITKKKKKRWWKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVYVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPMPIYLVT
Homology
[Close]
BLAST of CsaV3_6G023860 vs. NCBI nr
Match: XP_004150497.1 (PREDICTED: uncharacterized protein LOC101220317 [Cucumis sativus] >KGN47425.1 hypothetical protein Csa_6G319710 [Cucumis sativus])

HSP 1 Score: 359.8 bits (922), Expect = 5.7e-96
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY
Sbjct: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 186

[Close]
BLAST of CsaV3_6G023860 vs. NCBI nr
Match: XP_008458411.1 (PREDICTED: uncharacterized protein LOC103497835 [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 4.7e-90
Identity = 179/186 (96.24%), Postives = 180/186 (96.77%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDS+HFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSIHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DSKNI  XXXXXXX  A LFFKWKWIHIHHQNDAANFLH DDVHQARARAFRASISGPVY
Sbjct: 61  DSKNIXXXXXXXXXXXALLFFKWKWIHIHHQNDAANFLH-DDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 185

[Close]
BLAST of CsaV3_6G023860 vs. NCBI nr
Match: XP_023000154.1 (uncharacterized protein LOC111494438 [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 154/186 (82.80%), Postives = 161/186 (86.56%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MS+KSPVFPFP EPQHFSDYGFDPQIDYFQVLEEARKHRRE SRSIDS+HFKLQKPISKD
Sbjct: 1   MSSKSPVFPFP-EPQHFSDYGFDPQIDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DS  I         KNA LFFKWKW  IHHQNDA  F H  DVHQARARAFRASISGPVY
Sbjct: 61  DS--IKTKKKKRWWKNALLFFKWKW--IHHQNDAV-FTHHHDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGS+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA M
Sbjct: 121 VTESRSGSNTPLRSTTRPTSGPLAGTLTPTRKTDIQIPYLSLRELNMEQQQYRNSTSAAM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 180

[Close]
BLAST of CsaV3_6G023860 vs. NCBI nr
Match: XP_022930362.1 (uncharacterized protein LOC111436831 [Cucurbita moschata] >XP_023514750.1 uncharacterized protein LOC111778967 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 5.6e-75
Identity = 152/186 (81.72%), Postives = 161/186 (86.56%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MS+KSPVFPFP EPQHFSDYGFDPQ+DYFQVLEEARKHRRE SRSIDS+HFKLQKPISKD
Sbjct: 1   MSSKSPVFPFP-EPQHFSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DS  I         KNA LFFKWKW  +HHQNDA  F H  DVHQARARAFRASISGPVY
Sbjct: 61  DS--IKTKKKKRWWKNALLFFKWKW--VHHQNDAV-FTHHHDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGS+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA M
Sbjct: 121 VTESRSGSNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 180

[Close]
BLAST of CsaV3_6G023860 vs. NCBI nr
Match: XP_012083977.1 (uncharacterized protein LOC105643461 [Jatropha curcas] >KDP27830.1 hypothetical protein JCGZ_18910 [Jatropha curcas])

HSP 1 Score: 260.8 bits (665), Expect = 3.6e-66
Identity = 133/187 (71.12%), Postives = 157/187 (83.96%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           M+ KSP+FP P EPQHFSDYGFDPQIDYFQ LEEARKH++E++RSIDSLHFKL KPISKD
Sbjct: 1   MANKSPIFPMP-EPQHFSDYGFDPQIDYFQFLEEARKHKKETARSIDSLHFKLSKPISKD 60

Query: 61  D-SKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPV 120
           + ++   K       + AFLFFKWKWIH +  +D AN    +DVH+ARARAFRASISGPV
Sbjct: 61  ETNRKNHKTKKKRWWRKAFLFFKWKWIHSNDHDDLAN----EDVHKARARAFRASISGPV 120

Query: 121 YVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAP 180
           Y+TESRSGS+TP R+T+RPSSGPLAGTLTPTRKGD++IPYLSLRELNMEQQ+ +  S++ 
Sbjct: 121 YITESRSGSNTPYRTTSRPSSGPLAGTLTPTRKGDLDIPYLSLRELNMEQQEQQRMSTSA 180

Query: 181 MPIYLVT 187
           MPIYLVT
Sbjct: 181 MPIYLVT 182

[Close]
BLAST of CsaV3_6G023860 vs. TAIR10
Match: AT3G06840.1 (unknown protein)

HSP 1 Score: 164.5 bits (415), Expect = 6.4e-41
Identity = 108/195 (55.38%), Postives = 124/195 (63.59%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRS--IDSLHFKLQKPIS 60
           MS  SP+F      QHFSDYGFDPQ+ YFQV+EEARKH+RE+S     + L FK+QKPIS
Sbjct: 1   MSNISPIFSI-SNSQHFSDYGFDPQLHYFQVMEEARKHKRETSSKSYTNGLQFKIQKPIS 60

Query: 61  KDDSKNIT----KXXXXXXXKNAFLFFKW-KWIHIHHQNDAANFLHDDDVHQARARAFRA 120
           KD+    T    K       K A  FFKW KW              D  V   R+     
Sbjct: 61  KDNPTRSTMHNDKKKKRCWWKKALPFFKWRKW-----PISTVGVNEDRRVRNFRSVTGSM 120

Query: 121 SISGPVYVTESR-SGSSTPCRSTT-RPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQ 180
           S+SGP+Y TES  SGS+TP R+TT +PSSGP+AGTLTP RKGDV IPYLSLRELNMEQ Q
Sbjct: 121 SMSGPIYATESLISGSNTPYRTTTSKPSSGPIAGTLTPARKGDVAIPYLSLRELNMEQPQ 180

Query: 181 YRISSSAPMPIYLVT 187
            RIS S+  PIYLVT
Sbjct: 181 -RISISS-SPIYLVT 187

[Close]
BLAST of CsaV3_6G023860 vs. TAIR10
Match: AT5G49170.1 (unknown protein)

HSP 1 Score: 150.6 bits (379), Expect = 9.6e-37
Identity = 112/207 (54.11%), Postives = 125/207 (60.39%), Query Frame = 0 

Query: 1   MSTK--SPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPIS 60
           MS K  SP+FP  +  QHFSDYGFDPQI YFQVLEEA+KH+   S SID+  FKLQKPIS
Sbjct: 1   MSNKSISPIFPMLQS-QHFSDYGFDPQIHYFQVLEEAKKHK---SSSIDTFQFKLQKPIS 60

Query: 61  KDD-------SKNITKXXXXXXXKNAFLFFKW-KWI-------HIHHQNDAANFLHD-DD 120
           KDD       +KN  K       KNA  FFKW KW            +ND  N   D  D
Sbjct: 61  KDDLIRTTLHNKNKNK-KRWLWCKNALFFFKWRKWPISSAVVGRCSGENDGDNEFDDRSD 120

Query: 121 VHQARARAFRA-SISGPVYVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLS 180
           VH ARAR FRA SISGPVYVTES SGSSTP R  T  S+                + YLS
Sbjct: 121 VHFARARNFRAGSISGPVYVTESWSGSSTPYRPMTTTSA----------------VQYLS 180

Query: 181 LRELNMEQQQYRISSSAPM--PIYLVT 187
           LRELNME+QQ RI++S+ M  PIYLVT
Sbjct: 181 LRELNMERQQ-RITTSSSMSGPIYLVT 185

[Close]
BLAST of CsaV3_6G023860 vs. TrEMBL
Match: tr|A0A0A0KCH6|A0A0A0KCH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319710 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.8e-96
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY
Sbjct: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 186

[Close]
BLAST of CsaV3_6G023860 vs. TrEMBL
Match: tr|A0A1S3C7T3|A0A1S3C7T3_CUCME (uncharacterized protein LOC103497835 OS=Cucumis melo OX=3656 GN=LOC103497835 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.1e-90
Identity = 179/186 (96.24%), Postives = 180/186 (96.77%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDS+HFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSIHFKLQKPISKD 60

Query: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120
           DSKNI  XXXXXXX  A LFFKWKWIHIHHQNDAANFLH DDVHQARARAFRASISGPVY
Sbjct: 61  DSKNIXXXXXXXXXXXALLFFKWKWIHIHHQNDAANFLH-DDVHQARARAFRASISGPVY 120

Query: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180
           VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

Query: 181 PIYLVT 187
           PIYLVT
Sbjct: 181 PIYLVT 185

[Close]
BLAST of CsaV3_6G023860 vs. TrEMBL
Match: tr|A0A067K6E3|A0A067K6E3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18910 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.4e-66
Identity = 133/187 (71.12%), Postives = 157/187 (83.96%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60
           M+ KSP+FP P EPQHFSDYGFDPQIDYFQ LEEARKH++E++RSIDSLHFKL KPISKD
Sbjct: 1   MANKSPIFPMP-EPQHFSDYGFDPQIDYFQFLEEARKHKKETARSIDSLHFKLSKPISKD 60

Query: 61  D-SKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPV 120
           + ++   K       + AFLFFKWKWIH +  +D AN    +DVH+ARARAFRASISGPV
Sbjct: 61  ETNRKNHKTKKKRWWRKAFLFFKWKWIHSNDHDDLAN----EDVHKARARAFRASISGPV 120

Query: 121 YVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAP 180
           Y+TESRSGS+TP R+T+RPSSGPLAGTLTPTRKGD++IPYLSLRELNMEQQ+ +  S++ 
Sbjct: 121 YITESRSGSNTPYRTTSRPSSGPLAGTLTPTRKGDLDIPYLSLRELNMEQQEQQRMSTSA 180

Query: 181 MPIYLVT 187
           MPIYLVT
Sbjct: 181 MPIYLVT 182

[Close]
BLAST of CsaV3_6G023860 vs. TrEMBL
Match: tr|V4U0I4|V4U0I4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006010mg PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.9e-64
Identity = 142/187 (75.94%), Postives = 159/187 (85.03%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRE-SSRSIDSLHFKLQKPISK 60
           MS KSP+FP P EPQHFSDYGFDPQI+Y+QVLEEARKH++E SSRSID LHFKLQKPISK
Sbjct: 1   MSNKSPIFPMP-EPQHFSDYGFDPQINYYQVLEEARKHKKEASSRSIDLLHFKLQKPISK 60

Query: 61  DDSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPV 120
           +       XXXXXXXKNA LFFKW+WIH  HQ+D      D DVH ARARAFRASISGPV
Sbjct: 61  EXXXXXXXXXXXXXXKNALLFFKWRWIHNTHQHDLD---LDHDVHHARARAFRASISGPV 120

Query: 121 YVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAP 180
           Y+TESRSGSSTP R+T+RPSSGPLAGTLTP  KGDV++PYLSLRELNMEQQQ R+S+S+ 
Sbjct: 121 YITESRSGSSTPYRTTSRPSSGPLAGTLTPVAKGDVQVPYLSLRELNMEQQQQRMSTSS- 180

Query: 181 MPIYLVT 187
           +PIYLVT
Sbjct: 181 LPIYLVT 182

[Close]
BLAST of CsaV3_6G023860 vs. TrEMBL
Match: tr|A0A2H5N6K0|A0A2H5N6K0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_018900 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.9e-64
Identity = 142/187 (75.94%), Postives = 159/187 (85.03%), Query Frame = 0 

Query: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRE-SSRSIDSLHFKLQKPISK 60
           MS KSP+FP P EPQHFSDYGFDPQI+Y+QVLEEARKH++E SSRSID LHFKLQKPISK
Sbjct: 1   MSNKSPIFPMP-EPQHFSDYGFDPQINYYQVLEEARKHKKEASSRSIDLLHFKLQKPISK 60

Query: 61  DDSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPV 120
           +       XXXXXXXKNA LFFKW+WIH  HQ+D      D DVH ARARAFRASISGPV
Sbjct: 61  EXXXXXXXXXXXXXXKNALLFFKWRWIHNTHQHDLD---LDHDVHHARARAFRASISGPV 120

Query: 121 YVTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAP 180
           Y+TESRSGSSTP R+T+RPSSGPLAGTLTP  KGDV++PYLSLRELNMEQQQ R+S+S+ 
Sbjct: 121 YITESRSGSSTPYRTTSRPSSGPLAGTLTPVAKGDVQVPYLSLRELNMEQQQQRMSTSS- 180

Query: 181 MPIYLVT 187
           +PIYLVT
Sbjct: 181 LPIYLVT 182

The following BLAST results are available for this feature:
BLAST of CsaV3_6G023860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150497.15.7e-96100.00PREDICTED: uncharacterized protein LOC101220317 [Cucumis sativus] >KGN47425.1 hy... [more]
XP_008458411.14.7e-9096.24PREDICTED: uncharacterized protein LOC103497835 [Cucumis melo][more]
XP_023000154.14.3e-7582.80uncharacterized protein LOC111494438 [Cucurbita maxima][more]
XP_022930362.15.6e-7581.72uncharacterized protein LOC111436831 [Cucurbita moschata] >XP_023514750.1 unchar... [more]
XP_012083977.13.6e-6671.12uncharacterized protein LOC105643461 [Jatropha curcas] >KDP27830.1 hypothetical ... [more]
BLAST of CsaV3_6G023860 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06840.16.4e-4155.38unknown protein[more]
AT5G49170.19.6e-3754.11unknown protein[more]
BLAST of CsaV3_6G023860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G023860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCH6|A0A0A0KCH6_CUCSA3.8e-96100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319710 PE=4 SV=1[more]
tr|A0A1S3C7T3|A0A1S3C7T3_CUCME3.1e-9096.24uncharacterized protein LOC103497835 OS=Cucumis melo OX=3656 GN=LOC103497835 PE=... [more]
tr|A0A067K6E3|A0A067K6E3_JATCU2.4e-6671.12Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18910 PE=4 SV=1[more]
tr|V4U0I4|V4U0I4_9ROSI2.9e-6475.94Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006010mg PE=4 ... [more]
tr|A0A2H5N6K0|A0A2H5N6K0_CITUN2.9e-6475.94Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_018900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G023860.1CsaV3_6G023860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..150
NoneNo IPR availablePANTHERPTHR35488:SF2SUBFAMILY NOT NAMEDcoord: 1..186
NoneNo IPR availablePANTHERPTHR35488FAMILY NOT NAMEDcoord: 1..186

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G023860CSPI06G17500Wild cucumber (PI 183967)cpicucB365
CsaV3_6G023860Cucsa.069200Cucumber (Gy14) v1cgycucB067
CsaV3_6G023860CmaCh08G012380Cucurbita maxima (Rimu)cmacucB1074
CsaV3_6G023860CmoCh08G012120Cucurbita moschata (Rifu)cmocucB1056
CsaV3_6G023860Cp4.1LG17g00570Cucurbita pepo (Zucchini)cpecucB0404
CsaV3_6G023860CsGy6G016930Cucumber (Gy14) v2cgybcucB298
CsaV3_6G023860Carg18854Silver-seed gourdcarcucB0742
CsaV3_6G023860Cla009290Watermelon (97103) v1cucwmB563
CsaV3_6G023860MELO3C021313Melon (DHL92) v3.5.1cucmeB447
CsaV3_6G023860ClCG06G004980Watermelon (Charleston Gray)cucwcgB498
CsaV3_6G023860Lsi09G014480Bottle gourd (USVL1VR-Ls)cuclsiB425
CsaV3_6G023860MELO3C021313.2Melon (DHL92) v3.6.1cucmedB439
CsaV3_6G023860Cla97C06G114470Watermelon (97103) v2cucwmbB488
CsaV3_6G023860Bhi12G001807Wax gourdcucwgoB553
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G023860Watermelon (97103) v2cucwmbB483
CsaV3_6G023860Wax gourdcucwgoB576
CsaV3_6G023860Cucumber (Chinese Long) v3cuccucB148
CsaV3_6G023860Cucumber (Chinese Long) v3cuccucB184
CsaV3_6G023860Silver-seed gourdcarcucB0086
CsaV3_6G023860Silver-seed gourdcarcucB0310
CsaV3_6G023860Cucumber (Gy14) v2cgybcucB149
CsaV3_6G023860Cucumber (Gy14) v2cgybcucB301
CsaV3_6G023860Cucumber (Gy14) v1cgycucB396
CsaV3_6G023860Cucurbita maxima (Rimu)cmacucB0311
CsaV3_6G023860Cucurbita maxima (Rimu)cmacucB0450
CsaV3_6G023860Cucurbita maxima (Rimu)cmacucB1001
CsaV3_6G023860Cucurbita moschata (Rifu)cmocucB0304
CsaV3_6G023860Cucurbita moschata (Rifu)cmocucB0443
CsaV3_6G023860Cucurbita pepo (Zucchini)cpecucB0175
CsaV3_6G023860Cucurbita pepo (Zucchini)cpecucB0780
CsaV3_6G023860Wild cucumber (PI 183967)cpicucB185
CsaV3_6G023860Bottle gourd (USVL1VR-Ls)cuclsiB492
CsaV3_6G023860Melon (DHL92) v3.5.1cucmeB509
CsaV3_6G023860Melon (DHL92) v3.6.1cucmedB497
CsaV3_6G023860Watermelon (Charleston Gray)cucwcgB494
CsaV3_6G023860Watermelon (97103) v1cucwmB522