Carg18854 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18854
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Collagen alpha-1(III) chain like
Location	Cucurbita_argyrosperma_scaffold_162 : 126248 .. 126908 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCAAATCCCCTGTATTTCCCTTCCCTGAACCTCAACACTACAGCGACTATGGCTTCGATCCTCAACTCGACTATTTTCAGGTTCTTTTTTTTCTTCATTTAAAAAGGATTATTAATTTTTCTATTTATTCATTCAAATGGGGTTTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTATATATTTAGGTTTTGGAAGAAGCAAGGAAACACAGACGCGAGGGTTCGAGATCCATTGACTCCATTCATTTCAAGCTCCAAAAGCCTATTTCCAAAGACGATTCTATCAAAACCAAGAAGAAAAAACGGTGGTGGAAAAACGCTCTTCTCTTCTTCAAATGGAAATGGGTTCAACACCAAAACGACGCTGTTTTCACCCACCACCACGACGTTCACCAAGCCAGAGCACGAGCTTTCCGCGCCTCCATCTCCGGTCCGGTTTACGTAACTGAAAGCCGTAGCGCTTCCAACACGCCGTTACGTTCCACCACCCGACCGACATCCGGTCCACTCGCTGGAACGCTAACGCCGACGAGAAAATCCGACATCCAAATTCCGTATCTCAGCCTCCGAGAACTGAACATGGAGCAACAACAATACAGAAATTCCACGTCAGCAGCCATGCCCATTTACTTAGTCACTTGA

mRNA sequence

ATGTCCTCCAAATCCCCTGTATTTCCCTTCCCTGAACCTCAACACTACAGCGACTATGGCTTCGATCCTCAACTCGACTATTTTCAGGTTTTGGAAGAAGCAAGGAAACACAGACGCGAGGGTTCGAGATCCATTGACTCCATTCATTTCAAGCTCCAAAAGCCTATTTCCAAAGACGATTCTATCAAAACCAAGAAGAAAAAACGGTGGTGGAAAAACGCTCTTCTCTTCTTCAAATGGAAATGGGTTCAACACCAAAACGACGCTGTTTTCACCCACCACCACGACGTTCACCAAGCCAGAGCACGAGCTTTCCGCGCCTCCATCTCCGGTCCGGTTTACGTAACTGAAAGCCGTAGCGCTTCCAACACGCCGTTACGTTCCACCACCCGACCGACATCCGGTCCACTCGCTGGAACGCTAACGCCGACGAGAAAATCCGACATCCAAATTCCGTATCTCAGCCTCCGAGAACTGAACATGGAGCAACAACAATACAGAAATTCCACGTCAGCAGCCATGCCCATTTACTTAGTCACTTGA

Coding sequence (CDS)

ATGTCCTCCAAATCCCCTGTATTTCCCTTCCCTGAACCTCAACACTACAGCGACTATGGCTTCGATCCTCAACTCGACTATTTTCAGGTTTTGGAAGAAGCAAGGAAACACAGACGCGAGGGTTCGAGATCCATTGACTCCATTCATTTCAAGCTCCAAAAGCCTATTTCCAAAGACGATTCTATCAAAACCAAGAAGAAAAAACGGTGGTGGAAAAACGCTCTTCTCTTCTTCAAATGGAAATGGGTTCAACACCAAAACGACGCTGTTTTCACCCACCACCACGACGTTCACCAAGCCAGAGCACGAGCTTTCCGCGCCTCCATCTCCGGTCCGGTTTACGTAACTGAAAGCCGTAGCGCTTCCAACACGCCGTTACGTTCCACCACCCGACCGACATCCGGTCCACTCGCTGGAACGCTAACGCCGACGAGAAAATCCGACATCCAAATTCCGTATCTCAGCCTCCGAGAACTGAACATGGAGCAACAACAATACAGAAATTCCACGTCAGCAGCCATGCCCATTTACTTAGTCACTTGA

Protein sequence

MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDDSIKTKKKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT

Homology

[Close]

BLAST of Carg18854 vs. NCBI nr
Match: XP_022930362.1 (uncharacterized protein LOC111436831 [Cucurbita moschata] >XP_023514750.1 uncharacterized protein LOC111778967 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.8 bits (917), Expect = 2.1e-95
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           MSSKSPVFPFPEPQH+SDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD
Sbjct: 1   MSSKSPVFPFPEPQHFSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60

Query: 61  SIKTKKKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS 120
           SIKTKKKKRWWKNALLFFKWKWV HQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS
Sbjct: 61  SIKTKKKKRWWKNALLFFKWKWVHHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS 120

Query: 121 ASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT 180
            SNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT
Sbjct: 121 GSNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT 180

[Close]

BLAST of Carg18854 vs. NCBI nr
Match: XP_023000154.1 (uncharacterized protein LOC111494438 [Cucurbita maxima])

HSP 1 Score: 355.5 bits (911), Expect = 1.0e-94
Identity = 174/180 (96.67%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           MSSKSPVFPFPEPQH+SDYGFDPQ+DYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD
Sbjct: 1   MSSKSPVFPFPEPQHFSDYGFDPQIDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60

Query: 61  SIKTKKKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS 120
           SIKTKKKKRWWKNALLFFKWKW+ HQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS
Sbjct: 61  SIKTKKKKRWWKNALLFFKWKWIHHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRS 120

Query: 121 ASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT 180
            SNTPLRSTTRPTSGPLAGTLTPTRK+DIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT
Sbjct: 121 GSNTPLRSTTRPTSGPLAGTLTPTRKTDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT 180

[Close]

BLAST of Carg18854 vs. NCBI nr
Match: XP_004150497.1 (PREDICTED: uncharacterized protein LOC101220317 [Cucumis sativus] >KGN47425.1 hypothetical protein Csa_6G319710 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 149/186 (80.11%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MSSKSPVFPFP-EPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60
           MS+KSPVFPFP EPQH+SDYGFDPQ+DYFQVLEEARKHRRE SRSIDS+HFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60

Query: 61  DS--IKTKKKKRWWKNALLFFKWKW--VQHQNDAV-FTHHHDVHQARARAFRASISGPVY 120
           DS  I         KNA LFFKWKW  + HQNDA  F H  DVHQARARAFRASISGPVY
Sbjct: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120

Query: 121 VTESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAM 180
           VTESRS S+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA M
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

[Close]

BLAST of Carg18854 vs. NCBI nr
Match: XP_008458411.1 (PREDICTED: uncharacterized protein LOC103497835 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 148/185 (80.00%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   MSSKSPVFPFP-EPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60
           MS+KSPVFPFP EPQH+SDYGFDPQ+DYFQVLEEARKHRRE SRSIDSIHFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSIHFKLQKPISKD 60

Query: 61  DS--IKTKKKKRWWKNALLFFKWKW--VQHQNDAVFTHHHDVHQARARAFRASISGPVYV 120
           DS  I           ALLFFKWKW  + HQNDA    H DVHQARARAFRASISGPVYV
Sbjct: 61  DSKNIXXXXXXXXXXXALLFFKWKWIHIHHQNDAANFLHDDVHQARARAFRASISGPVYV 120

Query: 121 TESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMP 180
           TESRS S+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA MP
Sbjct: 121 TESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPMP 180

[Close]

BLAST of Carg18854 vs. NCBI nr
Match: XP_021898350.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110815030 [Carica papaya])

HSP 1 Score: 270.8 bits (691), Expect = 3.4e-69
Identity = 139/184 (75.54%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           MS+KSP+FP P+PQH+SDYGFDPQ+DYFQVLEEAR+H+R+ SRS DS+HFKLQKPISKDD
Sbjct: 1   MSNKSPIFPMPDPQHFSDYGFDPQIDYFQVLEEARRHKRDVSRSTDSLHFKLQKPISKDD 60

Query: 61  SIKTK--KKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVTES 120
           S K    KKKRWW+NALLFFKWKWV HQ D      HDVHQARARAFRASISGPVY+TES
Sbjct: 61  SRKPNKIKKKRWWRNALLFFKWKWVNHQLDG--NLDHDVHQARARAFRASISGPVYITES 120

Query: 121 RSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQ--QYRNSTSAAMPI 180
           RS S+TP R+T+RP+SGPLAGTLTPTRK D++IPYLSLRELN+EQQ    R STS ++PI
Sbjct: 121 RSGSSTPYRTTSRPSSGPLAGTLTPTRKGDVEIPYLSLRELNLEQQXXXXRISTS-SLPI 180

[Close]

BLAST of Carg18854 vs. TAIR10
Match: AT3G06840.1 (unknown protein)

HSP 1 Score: 171.8 bits (434), Expect = 3.9e-43
Identity = 106/191 (55.50%), Postives = 129/191 (67.54%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRS--IDSIHFKLQKPISK 60
           MS+ SP+F     QH+SDYGFDPQL YFQV+EEARKH+RE S     + + FK+QKPISK
Sbjct: 1   MSNISPIFSISNSQHFSDYGFDPQLHYFQVMEEARKHKRETSSKSYTNGLQFKIQKPISK 60

Query: 61  DDSIKT------KKKKRWWKNALLFFKW-KWVQHQNDAVFTHHHDVHQARARAFRASISG 120
           D+  ++      KKK+ WWK AL FFKW KW    +         V   R+     S+SG
Sbjct: 61  DNPTRSTMHNDKKKKRCWWKKALPFFKWRKW--PISTVGVNEDRRVRNFRSVTGSMSMSG 120

Query: 121 PVYVTESR-SASNTPLRSTT-RPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNS 180
           P+Y TES  S SNTP R+TT +P+SGP+AGTLTP RK D+ IPYLSLRELNMEQ Q R S
Sbjct: 121 PIYATESLISGSNTPYRTTTSKPSSGPIAGTLTPARKGDVAIPYLSLRELNMEQPQ-RIS 180

[Close]

BLAST of Carg18854 vs. TAIR10
Match: AT5G49170.1 (unknown protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-39
Identity = 111/205 (54.15%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 1   MSSK--SPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISK 60
           MS+K  SP+FP  + QH+SDYGFDPQ+ YFQVLEEA+KH+   S SID+  FKLQKPISK
Sbjct: 1   MSNKSISPIFPMLQSQHFSDYGFDPQIHYFQVLEEAKKHK---SSSIDTFQFKLQKPISK 60

Query: 61  DDSIKT------KKKKRW-W-KNALLFFKW-KWV-----------QHQNDAVFTHHHDVH 120
           DD I+T      K KKRW W KNAL FFKW KW            ++  D  F    DVH
Sbjct: 61  DDLIRTTLHNKNKNKKRWLWCKNALFFFKWRKWPISSAVVGRCSGENDGDNEFDDRSDVH 120

Query: 121 QARARAFRA-SISGPVYVTESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLR 180
            ARAR FRA SISGPVYVTES S S+TP R  T  ++                + YLSLR
Sbjct: 121 FARARNFRAGSISGPVYVTESWSGSSTPYRPMTTTSA----------------VQYLSLR 180

[Close]

BLAST of Carg18854 vs. TrEMBL
Match: tr|A0A0A0KCH6|A0A0A0KCH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319710 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.7e-72
Identity = 149/186 (80.11%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MSSKSPVFPFP-EPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60
           MS+KSPVFPFP EPQH+SDYGFDPQ+DYFQVLEEARKHRRE SRSIDS+HFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSLHFKLQKPISKD 60

Query: 61  DS--IKTKKKKRWWKNALLFFKWKW--VQHQNDAV-FTHHHDVHQARARAFRASISGPVY 120
           DS  I         KNA LFFKWKW  + HQNDA  F H  DVHQARARAFRASISGPVY
Sbjct: 61  DSKNITKXXXXXXXKNAFLFFKWKWIHIHHQNDAANFLHDDDVHQARARAFRASISGPVY 120

Query: 121 VTESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAM 180
           VTESRS S+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA M
Sbjct: 121 VTESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPM 180

[Close]

BLAST of Carg18854 vs. TrEMBL
Match: tr|A0A1S3C7T3|A0A1S3C7T3_CUCME (uncharacterized protein LOC103497835 OS=Cucumis melo OX=3656 GN=LOC103497835 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.4e-71
Identity = 148/185 (80.00%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   MSSKSPVFPFP-EPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKD 60
           MS+KSPVFPFP EPQH+SDYGFDPQ+DYFQVLEEARKHRRE SRSIDSIHFKLQKPISKD
Sbjct: 1   MSTKSPVFPFPEEPQHFSDYGFDPQIDYFQVLEEARKHRRESSRSIDSIHFKLQKPISKD 60

Query: 61  DS--IKTKKKKRWWKNALLFFKWKW--VQHQNDAVFTHHHDVHQARARAFRASISGPVYV 120
           DS  I           ALLFFKWKW  + HQNDA    H DVHQARARAFRASISGPVYV
Sbjct: 61  DSKNIXXXXXXXXXXXALLFFKWKWIHIHHQNDAANFLHDDVHQARARAFRASISGPVYV 120

Query: 121 TESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMP 180
           TESRS S+TP RSTTRP+SGPLAGTLTPTRK D++IPYLSLRELNMEQQQYR S+SA MP
Sbjct: 121 TESRSGSSTPCRSTTRPSSGPLAGTLTPTRKGDVEIPYLSLRELNMEQQQYRISSSAPMP 180

[Close]

BLAST of Carg18854 vs. TrEMBL
Match: tr|A0A067K6E3|A0A067K6E3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18910 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 5.5e-68
Identity = 130/183 (71.04%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           M++KSP+FP PEPQH+SDYGFDPQ+DYFQ LEEARKH++E +RSIDS+HFKL KPISKD+
Sbjct: 1   MANKSPIFPMPEPQHFSDYGFDPQIDYFQFLEEARKHKKETARSIDSLHFKLSKPISKDE 60

Query: 61  SIKTK---KKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVTE 120
           + +     KKKRWW+ A LFFKWKW+ H ND     + DVH+ARARAFRASISGPVY+TE
Sbjct: 61  TNRKNHKTKKKRWWRKAFLFFKWKWI-HSNDHDDLANEDVHKARARAFRASISGPVYITE 120

Query: 121 SRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPIY 180
           SRS SNTP R+T+RP+SGPLAGTLTPTRK D+ IPYLSLRELNMEQQ+ +  +++AMPIY
Sbjct: 121 SRSGSNTPYRTTSRPSSGPLAGTLTPTRKGDLDIPYLSLRELNMEQQEQQRMSTSAMPIY 180

[Close]

BLAST of Carg18854 vs. TrEMBL
Match: tr|B9RT86|B9RT86_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0682010 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 8.8e-66
Identity = 131/186 (70.43%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           M++KSP+FP PEPQH+SDYGFDPQ+DYFQ LEEARKH+RE +RSIDS+HFKLQKPISKD+
Sbjct: 1   MANKSPIFPMPEPQHFSDYGFDPQIDYFQFLEEARKHKRETARSIDSLHFKLQKPISKDE 60

Query: 61  SIKTK----KKKRWWKNALLFFKWKWVQHQNDAVFTHHHDVHQARARAFRASISGPVYVT 120
               K    KKKRWWK A LF KWKWVQ Q D       DVH+ARARAFRASISGPVY+T
Sbjct: 61  YSNKKPHKNKKKRWWKKAFLFLKWKWVQTQQDDF--ADEDVHKARARAFRASISGPVYIT 120

Query: 121 ESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNME--QQQYRNSTSAAM 180
           ESRS S+TP R+T+RP+SGPLAGTLTP RK D++IPYLSLRELN+E  QQQ++  ++++M
Sbjct: 121 ESRSGSSTPYRTTSRPSSGPLAGTLTPARKGDLEIPYLSLRELNVEQQQQQHQRMSTSSM 180

[Close]

BLAST of Carg18854 vs. TrEMBL
Match: tr|A0A2P5ES39|A0A2P5ES39_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_159560 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.8e-64
Identity = 134/184 (72.83%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 1   MSSKSPVFPFPEPQHYSDYGFDPQLDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDD 60
           MS+KSP+FP   PQH+SDYGFDPQ+DYFQVLEEARKH+RE  RSIDSIHFKLQKPISKDD
Sbjct: 1   MSNKSPIFPM--PQHFSDYGFDPQIDYFQVLEEARKHKRETIRSIDSIHFKLQKPISKDD 60

Query: 61  SIKTK--KKKRWWKNALLFFKWKWVQHQNDAVFTHH--HDVHQARARAFRASISGPVYVT 120
             KT+  KKKRWW++AL FFKWKW    +     HH   DVHQARARAFRASISGPVYVT
Sbjct: 61  IKKTQKGKKKRWWRSALFFFKWKWAYTPHGHSTAHHGFEDVHQARARAFRASISGPVYVT 120

Query: 121 ESRSASNTPLRSTTRPTSGPLAGTLTPTRKSDIQIPYLSLRELNMEQQQYRNSTSAAMPI 180
           ESRS S TP R+T+RPTSGPLAGTLTP  K ++ IPYLSLR LNMEQQQ    +++AMPI
Sbjct: 121 ESRSGSTTPYRTTSRPTSGPLAGTLTPPNKDELDIPYLSLRHLNMEQQQ--KVSTSAMPI 180

The following BLAST results are available for this feature:

BLAST of Carg18854 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930362.1	2.1e-95	98.33	uncharacterized protein LOC111436831 [Cucurbita moschata] >XP_023514750.1 unchar...	[more]
XP_023000154.1	1.0e-94	96.67	uncharacterized protein LOC111494438 [Cucurbita maxima]	[more]
XP_004150497.1	5.6e-72	80.11	PREDICTED: uncharacterized protein LOC101220317 [Cucumis sativus] >KGN47425.1 hy...	[more]
XP_008458411.1	3.6e-71	80.00	PREDICTED: uncharacterized protein LOC103497835 [Cucumis melo]	[more]
XP_021898350.1	3.4e-69	75.54	LOW QUALITY PROTEIN: uncharacterized protein LOC110815030 [Carica papaya]	[more]

BLAST of Carg18854 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06840.1	3.9e-43	55.50	unknown protein	[more]
AT5G49170.1	1.5e-39	54.15	unknown protein	[more]

BLAST of Carg18854 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18854 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCH6\|A0A0A0KCH6_CUCSA	3.7e-72	80.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319710 PE=4 SV=1	[more]
tr\|A0A1S3C7T3\|A0A1S3C7T3_CUCME	2.4e-71	80.00	uncharacterized protein LOC103497835 OS=Cucumis melo OX=3656 GN=LOC103497835 PE=...	[more]
tr\|A0A067K6E3\|A0A067K6E3_JATCU	5.5e-68	71.04	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18910 PE=4 SV=1	[more]
tr\|B9RT86\|B9RT86_RICCO	8.8e-66	70.43	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0682010 PE=4 SV=1	[more]
tr\|A0A2P5ES39\|A0A2P5ES39_9ROSA	2.8e-64	72.83	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_159560 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18854-RA	Carg18854-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..142
None	No IPR available	PANTHER	PTHR35488	FAMILY NOT NAMED	coord: 1..180
None	No IPR available	PANTHER	PTHR35488:SF2	SUBFAMILY NOT NAMED	coord: 1..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18854	Cla009290	Watermelon (97103) v1	carwmB0701
Carg18854	Csa6G319710	Cucumber (Chinese Long) v2	carcuB0724
Carg18854	MELO3C021313	Melon (DHL92) v3.5.1	carmeB0700
Carg18854	ClCG06G004980	Watermelon (Charleston Gray)	carwcgB0681
Carg18854	CSPI06G17500	Wild cucumber (PI 183967)	carcpiB0739
Carg18854	Cucsa.069200	Cucumber (Gy14) v1	carcgyB0785
Carg18854	CmaCh08G012380	Cucurbita maxima (Rimu)	carcmaB0988
Carg18854	CmoCh08G012120	Cucurbita moschata (Rifu)	carcmoB0960
Carg18854	Lsi09G014480	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18854	Cp4.1LG17g00570	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18854	CsGy6G016930	Cucumber (Gy14) v2	carcgybB0701
Carg18854	MELO3C021313.2	Melon (DHL92) v3.6.1	carmedB0713
Carg18854	CsaV3_6G023860	Cucumber (Chinese Long) v3	carcucB0742
Carg18854	Cla97C06G114470	Watermelon (97103) v2	carwmbB0735
Carg18854	Bhi12G001807	Wax gourd	carwgoB0827

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18854	Wax gourd	carwgoB0828
Carg18854	Silver-seed gourd	carcarB085
Carg18854	Silver-seed gourd	carcarB316
Carg18854	Cucumber (Gy14) v2	carcgybB0700
Carg18854	Cucumber (Gy14) v1	carcgyB0788
Carg18854	Cucurbita maxima (Rimu)	carcmaB0984
Carg18854	Cucurbita maxima (Rimu)	carcmaB0985
Carg18854	Cucurbita moschata (Rifu)	carcmoB0957
Carg18854	Cucurbita moschata (Rifu)	carcmoB0958
Carg18854	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18854	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18854	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18854	Wild cucumber (PI 183967)	carcpiB0738
Carg18854	Cucumber (Chinese Long) v2	carcuB0723
Carg18854	Cucumber (Chinese Long) v3	carcucB0741
Carg18854	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18854	Melon (DHL92) v3.5.1	carmeB0701
Carg18854	Melon (DHL92) v3.6.1	carmedB0714
Carg18854	Watermelon (Charleston Gray)	carwcgB0680
Carg18854	Watermelon (97103) v1	carwmB0700
Carg18854	Watermelon (97103) v2	carwmbB0734